Altericroceibacterium xinjiangense (CCTCC AB 207166, CIP 110125, S3-63)

Name: Altericroceibacterium xinjiangense (CCTCC AB 207166, CIP 110125, S3-63)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 133643

Type strain

Strain Designation S3-63

Culture col. no. CCTCC AB 207166 CIP 110125 S3-63

NCBI tax ID(s) 762261

Special Collections CIP Literature strains

Links

Altericroceibacterium xinjiangense S3-63 is an aerobe, Gram-negative, rod-shaped prokaryote that was isolated from Environment, Soil, sand sample.

Gram-negative rod-shaped aerobe genome sequence 16S sequence

Name and taxonomic classification

SI-ID 379026

CIP 110125

@ref 20215

Last LPSN update 2025-12-16 10:01:50

Domain Pseudomonadati

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Sphingomonadales

Family Erythrobacteraceae

Genus Altericroceibacterium

Species Altericroceibacterium xinjiangense

Full scientific name Altericroceibacterium xinjiangense (Xue et al. 2012) Xu et al. 2020

Synonyms (1)

Altererythrobacter xinjiangensis

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape
29902	negative	1.3-1.6 µm	1.1-1.2 µm	rod-shaped
125439	negative
125438	negative
123981	negative			oval-shaped

Pigmentation

29902

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Growth	Composition
42197	Marine agar (MA)		Distilled water make up to (1000.000 ml);Marine agar (55.100 g)
123981	CIP Medium 13

Culture temp

@ref	Growth	Type	Temperature (°C)
29902	positive	growth	20-37
29902	positive	optimum	30
42197	positive	growth	30

Culture pH

@ref	Ability	Type	PH
29902	positive	optimum	8
29902	positive	growth	07-09

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
29902	aerobe
125439	obligate aerobe

Spore formation

@ref	Spore formation	Confidence
125439		97

Halophily

@ref	Salt	Growth	Tested relation	Concentration
29902	NaCl	positive	growth	0-3 %
29902	NaCl	positive	optimum	1 %

Observation

29902

Observationaggregates in clumps

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
29902	30089 ChEBI	acetate	+	carbon source
29902	22653 ChEBI	asparagine	+	carbon source
29902	23652 ChEBI	dextrin	+	carbon source
29902	28757 ChEBI	fructose	+	carbon source
29902	28087 ChEBI	glycogen	+	carbon source
29902	51850 ChEBI	methyl pyruvate	+	carbon source
123981	17632 ChEBI	nitrate	+	reduction
123981	16301 ChEBI	nitrite	+	reduction
29902	18257 ChEBI	ornithine	+	carbon source
29902	16634 ChEBI	raffinose	+	carbon source
29902	53423 ChEBI	tween 40	+	carbon source

Metabolite production

@ref	Chebi-ID	Metabolite	Production
123981	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
29902	acid phosphatase	+	3.1.3.2
68382	acid phosphatase	+	3.1.3.2	from API zym
29902	alkaline phosphatase	+	3.1.3.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	+	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	+	3.2.1.23	from API zym
68382	beta-glucosidase	+	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
29902	catalase	+	1.11.1.6
123981	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
123981	oxidase	-
68382	trypsin	-	3.4.21.4	from API zym
123981	urease	-	3.5.1.5
68382	valine arylamidase	+		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
123981	-	+	+	+	-	+	+	-	-	+	+	+	-	+	-	+	+	-	-	-

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Isolation date
123981	Environment, Soil, sand sample	Xinjiang	China	CHN	Asia	2007

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
123981	1	Risk group (French classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM395863v1 assembly for Altericroceibacterium xinjiangense CCTCC AB 207166	contig	GCA_003958635	762261.3	2894831738	762261	61.41

Genome browser: GCA_003958635

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
29902	Altererythrobacter xinjiangensis strain S3-63 16S ribosomal RNA gene, partial sequence	HM028673	1444		762261

GC content

29902

GC-content (mol%)64.6

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Altericroceibacterium xinjiangense CCTCC AB 207166
NCBI: GCA_003958635

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	97.00	no
125439	motility	BacteriaNetⓘ	no	54.40	no
125439	gram_stain	BacteriaNetⓘ	negative	99.30	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.30	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Altererythrobacter xinjiangensis strain CCTCC AB 207166
PATRIC: 762261.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	94.83	yes
125438	anaerobic	anaerobicⓘ	no	92.23	yes
125438	aerobic	aerobicⓘ	yes	79.87	no
125438	spore-forming	spore-formingⓘ	no	89.20	no
125438	thermophilic	thermophileⓘ	no	95.94	yes
125438	flagellated	motile2+ⓘ	no	57.49	no

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#29902	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26274 (see below)
#42197	; Curators of the CIP;
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68382	Automatically annotated from API zym .
#123981	Collection of Institut Pasteur ; Curators of the CIP; CIP 110125
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Altericroceibacterium xinjiangense (CCTCC AB 207166, CIP 110125, S3-63)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Metabolite production

Enzymes

API zym

Isolation, sampling and environmental information

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_003958635

16S sequences

GC content

Genome-based predictions

Predictions

Literature

References

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