Name: Altericroceibacterium xinjiangense S3-63
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 133643

Type strain:

Species: Altericroceibacterium xinjiangense

Strain Designation: S3-63

Culture col. no.: CCTCC AB 207166, CIP 110125

Strain history: CIP <- 2010, CCTCC <- Q. Xue <- K. Zhang, China: strain S3-63

NCBI tax ID(s): 762261 (species)

SI-ID 379026

CIP 110125

Special Collections

Section

When using BacDive for research please cite our paper

Altericroceibacterium xinjiangense S3-63 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from Environment, Soil, sand sample.

Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Sphingomonadales*
	Family	*Erythrobacteraceae*
	Genus	*Altericroceibacterium*
	Species	**Altericroceibacterium xinjiangense**
	Full Scientific Name (LPSN)	Altericroceibacterium xinjiangense (Xue et al. 2012) Xu et al. 2020

Synonym

Altererythrobacter xinjiangensis

Information on morphological and physiological properties Morphology

[Ref.: #29902]	Gram stain	negative
[Ref.: #123981]	Gram stain	negative
[Ref.: #125439]	Gram stain	negative Confidence in %99.3
[Ref.: #125438]	Gram stain	negative Confidence in %94.833

[Ref.: #29902]	Cell length	1.3-1.6 µm

[Ref.: #29902]	Cell width	1.1-1.2 µm

[Ref.: #29902]	Cell shape	rod-shaped
[Ref.: #123981]	Cell shape	oval-shaped

[Ref.: #29902]	Motility	no
[Ref.: #123981]	Motility	no

[Ref.: #29902]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #42197]

Culture medium

Marine agar (MA)

[Ref.: #42197]

Culture medium growth

[Ref.: #42197]

Culture medium composition

expand / minimize

[Ref.: #123981]

Culture medium

CIP Medium 13

[Ref.: #123981]

Culture medium growth

[Ref.: #123981]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #29902]	growth	20-37 °C
[Ref.: #29902]	optimum	30 °C
[Ref.: #42197]	growth	30 °C

	pH	Kind of pH		pH
[Ref.: #29902]			optimum	8
[Ref.: #29902]			growth	07-09

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29902]	Oxygen tolerance	aerobe
[Ref.: #125439]	Oxygen tolerance	obligate aerobe Confidence in %98.3

[Ref.: #125439]

Ability of spore formation

no Confidence in %97

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29902]		NaCl		growth	0-3	%
[Ref.: #29902]		NaCl		optimum	1	%

[Ref.: #29902]

Observation

aggregates in clumps

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29902]	acetate ChEBI	+	carbon source
[Ref.: #29902]	asparagine ChEBI	+	carbon source
[Ref.: #29902]	dextrin ChEBI	+	carbon source
[Ref.: #29902]	fructose ChEBI	+	carbon source
[Ref.: #29902]	glycogen ChEBI	+	carbon source
[Ref.: #29902]	methyl pyruvate ChEBI	+	carbon source
[Ref.: #123981]	nitrate ChEBI	+	reduction
[Ref.: #123981]	nitrite ChEBI	+	reduction
[Ref.: #29902]	ornithine ChEBI	+	carbon source
[Ref.: #29902]	raffinose ChEBI	+	carbon source
[Ref.: #29902]	tween 40 ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #123981]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #29902]	acid phosphatase	+	3.1.3.2
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #29902]	alkaline phosphatase	+	3.1.3.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	+	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #29902]	catalase	+	1.11.1.6
[Ref.: #123981]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #123981]	oxidase	-
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #123981]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #123981]	12380	-	+	+	+	-	+	+	-	-	+	+	+	-	+	-	+	+	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #123981]	Sample type/isolated from	Environment, Soil, sand sample
[Ref.: #123981]	Geographic location (country and/or sea, region)	Xinjiang
[Ref.: #123981]	Country	China
[Ref.: #123981]	Country ISO 3 Code	CHN
[Ref.: #123981]	Continent	Asia
[Ref.: #123981]	Isolation date	2007
* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #123981]

Biosafety level

Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #29902]	Altererythrobacter xinjiangensis strain S3-63 16S ribosomal RNA gene, partial sequence	HM028673	1444	GenBank ENA	762261 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Altericroceibacterium xinjiangense CCTCC AB 207166	GCA_003958635	contig	GenBank ENA	762261 tax ID	*
[Ref.: #66792]	Altererythrobacter xinjiangensis strain CCTCC AB 207166	762261.3	wgs	PATRIC	762261 tax ID	*
[Ref.: #66792]	Altererythrobacter xinjiangensis CCTCC AB 207166	2894831738	draft	JGI IMG/M	762261 tax ID	*

[Ref.: #29902]

GC-content

64.6 mol%

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Altererythrobacter xinjiangensis strain CCTCC AB 207166 PATRIC: 762261.3
[Ref.: #125438]	gram-positive	gram-positiveⓘ	no	94.833	yes
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	92.232	yes
[Ref.: #125438]	aerobic	aerobicⓘ	yes	79.869	no
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	89.204	no
[Ref.: #125438]	thermophile	thermophilicⓘ	no	95.941	yes
[Ref.: #125438]	motile2+	flagellatedⓘ	no	57.49	no

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Altericroceibacterium xinjiangense CCTCC AB 207166 NCBI: GCA_003958635
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	no	97
[Ref.: #125439]	BacteriaNet	motilityⓘ	no	54.4
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	negative	99.3
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	obligate aerobe	98.3

Availability in culture collections External links

[Ref.: #29902]

Culture collection no.

CCTCC AB 207166, CIP 110125

[Ref.: #91540]

SI-ID 379026

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29902

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26274 (see below)

#42197 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68382

Automatically annotated from API zym .

#91540

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID379026.1 )

#123981 Collection of Institut Pasteur ; Curators of the CIP; CIP 110125

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

#26274

IJSEM 28 2012 ( DOI 10.1099/ijs.0.025437-0 , PubMed 21317278 )

* These data were automatically processed and therefore are not curated

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Altererythrobacter xinjiangensis strain CCTCC AB 207166

Altericroceibacterium xinjiangense CCTCC AB 207166

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