Name: Flavobacterium yonginense KCTC 22796
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 133631

Type strain:

Species: Flavobacterium yonginense

Culture col. no.: KCTC 22796, CECT 7594, HMD 1001

Strain history: <- KS Joh, Hankuk Univ. of Foreign Studies, Korea

NCBI tax ID(s): 649100 (species)

SI-ID 379626

CECT 7594, KCTC 22796

Special Collections

Section

Flavobacterium yonginense KCTC 22796 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from freshwater .

Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Flavobacterium*
	Species	**Flavobacterium yonginense**
	Full Scientific Name (LPSN)	Flavobacterium yonginense Joung et al. 2012

Information on morphological and physiological properties Morphology

[Ref.: #29856]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative

[Ref.: #29856]	Cell length	1.5-2.0 µm

[Ref.: #29856]	Cell width	0.5-0.6 µm

[Ref.: #29856]	Cell shape	rod-shaped

[Ref.: #29856]	Motility	no

[Ref.: #29856]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #29856]	growth	15-30 °C
[Ref.: #29856]	optimum	20 °C
[Ref.: #67771]	growth	30 °C

	pH	Kind of pH		pH
[Ref.: #29856]			growth	7

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29856]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29856]		NaCl		growth	0-0.5	%
[Ref.: #29856]		NaCl		optimum	0.50	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29856]	asparagine ChEBI	+	carbon source
[Ref.: #29856]	aspartate ChEBI	+	carbon source
[Ref.: #29856]	cellobiose ChEBI	+	carbon source
[Ref.: #29856]	dextrin ChEBI	+	carbon source
[Ref.: #29856]	esculin ChEBI	+	hydrolysis
[Ref.: #29856]	galactose ChEBI	+	carbon source
[Ref.: #29856]	glucose ChEBI	+	carbon source
[Ref.: #29856]	glutamate ChEBI	+	carbon source
[Ref.: #29856]	glycogen ChEBI	+	carbon source
[Ref.: #29856]	lactate ChEBI	+	carbon source
[Ref.: #29856]	lactose ChEBI	+	carbon source
[Ref.: #29856]	maltose ChEBI	+	carbon source
[Ref.: #29856]	mannose ChEBI	+	carbon source
[Ref.: #29856]	ornithine ChEBI	+	carbon source
[Ref.: #29856]	proline ChEBI	+	carbon source
[Ref.: #29856]	raffinose ChEBI	+	carbon source
[Ref.: #29856]	succinate ChEBI	+	carbon source
[Ref.: #29856]	sucrose ChEBI	+	carbon source
[Ref.: #29856]	trehalose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #29856]	acid phosphatase	+	3.1.3.2
[Ref.: #29856]	alkaline phosphatase	+	3.1.3.1
[Ref.: #29856]	catalase	+	1.11.1.6
[Ref.: #29856]	cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #29856]	Sample type/isolated from	freshwater (river, lake, pond)

[Ref.: #67771]	Sample type/isolated from	From freshwater, mesotrophic artificial lake
[Ref.: #67771]	Geographic location (country and/or sea, region)	Yongin
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Freshwater
#Environmental	#Aquatic	#Lake (large)
#Environmental	#Aquatic	#Pond (small)
#Environmental	#Aquatic	#River (Creek)

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #29856]	Flavobacterium yonginense strain HMD1001 16S ribosomal RNA gene, partial sequence	GQ144413	1379	GenBank ENA	649100 tax ID

[Ref.: #29856]

GC-content

35.9 mol%

Availability in culture collections External links

[Ref.: #29856]

Culture collection no.

KCTC 22796, CECT 7594, HMD 1001

[Ref.: #91533]

SI-ID 379626

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Flavobacterium yonginense sp. nov. and Flavobacterium myungsuense sp. nov., isolated from a mesotrophic artificial lake.	Joung Y, Kim H, Ahn TS, Joh K	Int J Syst Evol Microbiol	10.1099/ijs.0.022814-0	2011	*
Phylogeny	Flavobacterium lacicola sp. nov., isolated from a freshwater lake.	Park M, Song J, Nam GG, Kim S, Joung Y, Cho JC	Int J Syst Evol Microbiol	10.1099/ijsem.0.002712	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29856

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26230 (see below)

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#91533

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID379626.1 )

#26230

IJSEM 806 2012 ( DOI 10.1099/ijs.0.022814-0 , PubMed 21571932 )

* These data were automatically processed and therefore are not curated

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