Strain identifier

BacDive ID: 133631

Type strain: Yes

Species: Flavobacterium yonginense

Strain history: <- KS Joh, Hankuk Univ. of Foreign Studies, Korea

NCBI tax ID(s): 649100 (species)

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General

@ref: 29856

BacDive-ID: 133631

keywords: 16S sequence, Bacteria, aerobe, Gram-negative, rod-shaped

description: Flavobacterium yonginense KCTC 22796 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from freshwater .

NCBI tax id

  • NCBI tax id: 649100
  • Matching level: species

strain history

  • @ref: 67771
  • history: <- KS Joh, Hankuk Univ. of Foreign Studies, Korea

doi: 10.13145/bacdive133631.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Flavobacteriaceae
  • genus: Flavobacterium
  • species: Flavobacterium yonginense
  • full scientific name: Flavobacterium yonginense Joung et al. 2012

@ref: 29856

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Flavobacterium

species: Flavobacterium yonginense

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotility
29856negative1.5-2.0 µm0.5-0.6 µmrod-shapedno
67771negative

pigmentation

  • @ref: 29856
  • production: yes

Culture and growth conditions

culture temp

@refgrowthtypetemperaturerange
29856positivegrowth15-30
29856positiveoptimum20psychrophilic
67771positivegrowth30mesophilic

culture pH

  • @ref: 29856
  • ability: positive
  • type: growth
  • pH: 7

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
29856aerobe
67771aerobe

halophily

@refsaltgrowthtested relationconcentration
29856NaClpositivegrowth0-0.5 %
29856NaClpositiveoptimum0.50 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2985622653asparagine+carbon source
2985635391aspartate+carbon source
2985617057cellobiose+carbon source
2985623652dextrin+carbon source
2985628260galactose+carbon source
2985617234glucose+carbon source
2985629987glutamate+carbon source
2985628087glycogen+carbon source
2985624996lactate+carbon source
2985617716lactose+carbon source
2985617306maltose+carbon source
2985637684mannose+carbon source
2985618257ornithine+carbon source
2985626271proline+carbon source
2985616634raffinose+carbon source
2985630031succinate+carbon source
2985617992sucrose+carbon source
2985627082trehalose+carbon source
298564853esculin+hydrolysis

enzymes

@refvalueactivityec
29856acid phosphatase+3.1.3.2
29856alkaline phosphatase+3.1.3.1
29856catalase+1.11.1.6
29856cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
29856freshwater (river, lake, pond)
67771From freshwater, mesotrophic artificial lakeYonginRepublic of KoreaKORAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Freshwater
#Environmental#Aquatic#Lake (large)
#Environmental#Aquatic#Pond (small)
#Environmental#Aquatic#River (Creek)

Sequence information

16S sequences

  • @ref: 29856
  • description: Flavobacterium yonginense strain HMD1001 16S ribosomal RNA gene, partial sequence
  • accession: GQ144413
  • length: 1379
  • database: nuccore
  • NCBI tax ID: 649100

GC content

  • @ref: 29856
  • GC-content: 35.9

External links

@ref: 29856

culture collection no.: KCTC 22796, CECT 7594, HMD 1001

straininfo link

  • @ref: 91533
  • straininfo: 379626

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny21571932Flavobacterium yonginense sp. nov. and Flavobacterium myungsuense sp. nov., isolated from a mesotrophic artificial lake.Joung Y, Kim H, Ahn TS, Joh KInt J Syst Evol Microbiol10.1099/ijs.0.022814-02011Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacterium/*classification/genetics/isolation & purification, Lakes/*microbiology, Molecular Sequence Data, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Water MicrobiologyGenetics
Phylogeny29537359Flavobacterium lacicola sp. nov., isolated from a freshwater lake.Park M, Song J, Nam GG, Kim S, Joung Y, Cho JCInt J Syst Evol Microbiol10.1099/ijsem.0.0027122018Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacterium/*classification/genetics/isolation & purification, Lakes/*microbiology, Phospholipids/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistryTranscriptome

Reference

@idauthorstitledoi/urlID_cross_referencepubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
29856Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172623028776041
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
91533Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID379626.1