Haloarcula salaria (BCC 40029, JCM 15759, PCU 313)

Name: Haloarcula salaria (BCC 40029, JCM 15759, PCU 313)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 133624

Type strain

Strain Designation HST01-2R

Culture col. no. BCC 40029 JCM 15759 PCU 313 HST01-2R

NCBI tax ID(s) 43776

Special Collections JCM Literature strains

Links

Haloarcula salaria HST01-2R is an aerobe, Gram-negative, rod-shaped prokaryote that was isolated from food product.

Gram-negative rod-shaped aerobe genome sequence 16S sequence

Name and taxonomic classification

SI-ID 24762

JCM 15759,JCM 15760

@ref 20215

Last LPSN update 2025-12-16 10:01:50

Domain Methanobacteriati

Phylum Methanobacteriota

Class Halobacteria

Order Halobacteriales

Family Haloarculaceae

Genus Haloarcula

Species Haloarcula salaria

Full scientific name Haloarcula salaria Namwong et al. 2011

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
29820	negative	1.5 µm	0.7 µm	rod-shaped
125439	negative

Pigmentation

29820

Productionno

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
29820	positive	growth	15-45
29820	positive	optimum	37
67770	positive	growth	37

Culture pH

@ref	Ability	Type	PH
29820	positive	optimum	7
29820	positive	growth	6.0-8.0

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
29820	aerobe
125439	aerobe

Spore formation

@ref	Spore formation	Confidence
125439		90.4

Halophily

@ref	Salt	Growth	Tested relation	Concentration
29820	NaCl	positive	growth	15-30 %
29820	NaCl	positive	optimum	22.5 %

Observation

67770

Observationquinones: MK-8, MK-8(H₂)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
29820	35391 ChEBI	aspartate	+	carbon source
29820	17057 ChEBI	cellobiose	+	carbon source
29820	17234 ChEBI	glucose	+	carbon source
29820	29987 ChEBI	glutamate	+	carbon source
29820	17754 ChEBI	glycerol	+	carbon source
29820	16634 ChEBI	raffinose	+	carbon source

Enzymes

@ref	Value	Activity	Ec
29820	catalase	+	1.11.1.6
29820	cytochrome oxidase	+	1.9.3.1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Food production	#Food

Isolation

@ref	Sample type
29820	food product
67770	Salt in a fish sauce sample from Thailand

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
66792	ASM1464709v1 assembly for Haloarcula argentinensis JCM 15759	contig	GCA_014647095	575195.35	575195	62.15

Genome browser: GCA_014647095

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
29820	Haloarcula salaria strain HST01-2R 16S ribosomal RNA (rrnA) gene, partial sequence	FJ429317	1479	575195
67770	Haloarcula salaria strain HST01-2R 16S ribosomal RNA (rrnB) gene, partial sequence	FJ429318	1484	575195
124043	Haloarcula argentinensis gene for 16S rRNA, complete sequence, strain: JCM 15759.	AB663355	1472	43776
124043	Haloarcula salaria strain JCM 15759 16S ribosomal RNA (rrnA) gene, partial sequence.	KF962643	1472	43776
124043	Haloarcula salaria strain JCM 15759 16S ribosomal RNA (rrnB) gene, partial sequence.	KF962644	1472	43776
124043	Haloarcula salaria strain JCM 15759 16S ribosomal RNA (rrnC) gene, partial sequence.	KF962645	1472	43776
124043	Haloarcula salaria strain JCM 15759 16S ribosomal RNA gene, partial sequence.	MT760368	1356	43776

GC content

@ref	GC-content (mol%)
29820	61.6
67770	61.6

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Haloarcula salaria JCM 15759
NCBI: GCA_014647095

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	90.40	no
125439	motility	BacteriaNetⓘ	yes	51.40	no
125439	gram_stain	BacteriaNetⓘ	negative	93.30	no
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	92.60	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Haloarcula salaria strain JCM 15759
PATRIC: 575195.35

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	76.61	yes
125438	anaerobic	anaerobicⓘ	no	87.11	yes
125438	spore-forming	spore-formingⓘ	no	82.45	no
125438	aerobic	aerobicⓘ	yes	79.64	yes
125438	thermophilic	thermophileⓘ	no	81.92	no
125438	flagellated	motile2+ⓘ	no	87.50	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Isolation and Taxonomic Characterization of Novel Haloarchaeal Isolates From Indian Solar Saltern: A Brief Review on Distribution of Bacteriorhodopsins and V-Type ATPases in Haloarchaea.	Verma DK, Chaudhary C, Singh L, Sidhu C, Siddhardha B, Prasad SE, Thakur KG.	Front Microbiol	10.3389/fmicb.2020.554927	2020
Phylogeny	Haloarcula salaria sp. nov. and Haloarcula tradensis sp. nov., isolated from salt in Thai fish sauce.	Namwong S, Tanasupawat S, Kudo T, Itoh T	Int J Syst Evol Microbiol	10.1099/ijs.0.021790-0	2010

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#29820	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26197 (see below)
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Haloarcula salaria (BCC 40029, JCM 15759, PCU 313)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_014647095

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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