Name: Haloarcula salaria HST01-2R
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133624

Type strain:

Species: Haloarcula salaria

Strain Designation: HST01-2R

Culture col. no.: BCC 40029, JCM 15759, PCU 313

Strain history: S. Namwong HST01-2R.

NCBI tax ID(s): 575195 (species)

Section

Haloarcula salaria HST01-2R is an aerobe, Gram-negative, rod-shaped archaeon that was isolated from food product.

Gram-negative
rod-shaped
aerobe
16S sequence
Archaea
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Archaea"
	Phylum	*Methanobacteriota*
	Class	*Halobacteria*
	Order	*Halobacteriales*
	Family	*Haloarculaceae*
	Genus	*Haloarcula*
	Species	**Haloarcula salaria**
	Full Scientific Name (LPSN)	Haloarcula salaria Namwong et al. 2011

Information on morphological and physiological properties Morphology

[Ref.: #29820]	Gram stain	negative

[Ref.: #29820]	Cell length	1.5 µm

[Ref.: #29820]	Cell width	0.7 µm

[Ref.: #29820]	Cell shape	rod-shaped

[Ref.: #29820]	Motility	no

[Ref.: #29820]

Pigment production

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #29820]	growth	15-45 °C
[Ref.: #29820]	optimum	37 °C
[Ref.: #67770]	growth	37 °C

[Ref.: #29820]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #29820]			optimum	7
[Ref.: #29820]			growth	6.0-8.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29820]

Oxygen tolerance

aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29820]		NaCl		growth	15-30	%
[Ref.: #29820]		NaCl		optimum	22.5	%

[Ref.: #67770]

Observation

quinones: MK-8, MK-8(H₂)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29820]	aspartate ChEBI	+	carbon source
[Ref.: #29820]	cellobiose ChEBI	+	carbon source
[Ref.: #29820]	glucose ChEBI	+	carbon source
[Ref.: #29820]	glutamate ChEBI	+	carbon source
[Ref.: #29820]	glycerol ChEBI	+	carbon source
[Ref.: #29820]	raffinose ChEBI	+	carbon source

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #29820]		catalase	+	1.11.1.6
[Ref.: #29820]		cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #29820]	Sample type/isolated from	food product

[Ref.: #67770]	Sample type/isolated from	Salt in a fish sauce sample from Thailand
* marker position based on {}

Isolation sources categories

#Engineered

#Food production

#Food

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #29820]	Haloarcula salaria strain HST01-2R 16S ribosomal RNA (rrnA) gene, partial sequence	FJ429317	1479	GenBank	575195 tax ID
[Ref.: #67770]	Haloarcula salaria strain HST01-2R 16S ribosomal RNA (rrnB) gene, partial sequence	FJ429318	1484	ENA	575195 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Haloarcula salaria JCM 15759	GCA_014647095	contig	GenBank	575195 tax ID	*
[Ref.: #66792]	Haloarcula salaria strain JCM 15759	575195.35	wgs	PATRIC	575195 tax ID	*

[Ref.: #29820]	GC-content	61.6 mol%
[Ref.: #67770]	GC-content	61.6 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Haloarcula salaria strain JCM 15759 PATRIC: 575195.35
[Ref.: #69480]	gram-positive	no	97.082	yes
[Ref.: #69480]	anaerobic	no	95.861	yes
[Ref.: #69480]	halophile	yes	88.963	yes
[Ref.: #69480]	spore-forming	no	93.25	no
[Ref.: #69480]	glucose-util	yes	90.721	yes
[Ref.: #69480]	thermophile	no	89.887	no
[Ref.: #69480]	motile	no	84.194	yes
[Ref.: #69480]	flagellated	no	95.509	no
[Ref.: #69480]	aerobic	yes	86.171	yes
[Ref.: #69480]	glucose-ferment	no	82.932	no

Availability in culture collections External links

[Ref.: #29820]

Culture collection no.

BCC 40029, JCM 15759, PCU 313

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Haloarcula salaria sp. nov. and Haloarcula tradensis sp. nov., isolated from salt in Thai fish sauce.	Namwong S, Tanasupawat S, Kudo T, Itoh T	Int J Syst Evol Microbiol	10.1099/ijs.0.021790-0	2010	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29820

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26197 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#26197

IJSEM 231 2011 ( DOI 10.1099/ijs.0.021790-0 , PubMed 20207809 )

* These data were automatically processed and therefore are not curated

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Haloarcula salaria strain JCM 15759

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