Name: Paracoccus fistulariae 22-May
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133625

Type strain:

Species: Paracoccus fistulariae

Strain Designation: 22-May

Culture col. no.: KCTC 22803, CCUG 58401

NCBI tax ID(s): 658446 (species)

SI-ID 374141

KCTC 22803, CCUG 58401

Section

Paracoccus fistulariae 22-May is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from bluespotted cornetfish.

Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodobacterales*
	Family	*Paracoccaceae*
	Genus	*Paracoccus*
	Species	**Paracoccus fistulariae**
	Full Scientific Name (LPSN)	Paracoccus fistulariae Kim et al. 2010

Information on morphological and physiological properties Morphology

[Ref.: #29821]	Gram stain	negative

[Ref.: #29821]	Cell length	0.7-2.5 µm

[Ref.: #29821]	Cell width	0.3-0.6 µm

[Ref.: #29821]	Cell shape	rod-shaped

[Ref.: #29821]	Motility	no

[Ref.: #61680]

Incubation period

1 day

[Ref.: #29821]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #29821]	growth	10-40 °C
[Ref.: #29821]	optimum	30 °C
[Ref.: #61680]	growth	30 °C

[Ref.: #29821]	Temperature range	mesophilic
[Ref.: #61680]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #29821]			optimum	07-08
[Ref.: #29821]			growth	05-08

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29821]	Oxygen tolerance	aerobe
[Ref.: #61680]	Oxygen tolerance	aerobe

[Ref.: #29821]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29821]		NaCl		growth	0-14	%
[Ref.: #29821]		NaCl		optimum	02-05	%

[Ref.: #29821]

Observation

aggregates in chains

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29821]	arabinose ChEBI	+	carbon source
[Ref.: #29821]	cellobiose ChEBI	+	carbon source
[Ref.: #29821]	fructose ChEBI	+	carbon source
[Ref.: #29821]	galactose ChEBI	+	carbon source
[Ref.: #29821]	glucose ChEBI	+	carbon source
[Ref.: #29821]	lactose ChEBI	+	carbon source
[Ref.: #29821]	maltose ChEBI	+	carbon source
[Ref.: #29821]	mannose ChEBI	+	carbon source
[Ref.: #29821]	melibiose ChEBI	+	carbon source
[Ref.: #29821]	nitrate ChEBI	+	reduction
[Ref.: #29821]	rhamnose ChEBI	+	carbon source
[Ref.: #29821]	ribose ChEBI	+	carbon source
[Ref.: #29821]	salicin ChEBI	+	carbon source
[Ref.: #29821]	sucrose ChEBI	+	carbon source
[Ref.: #29821]	trehalose ChEBI	+	carbon source
[Ref.: #29821]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #29821]		catalase	+	1.11.1.6
[Ref.: #29821]		cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #29821]	Sample type/isolated from	bluespotted cornetfish

[Ref.: #61680]	Sample type/isolated from	Bluespotted cornetfish,Fistularia commersonii
[Ref.: #61680]	Sampling date	2008
[Ref.: #61680]	Geographic location (country and/or sea, region)	South sea
[Ref.: #61680]	Country	Republic of Korea
[Ref.: #61680]	Country ISO 3 Code	KOR
[Ref.: #61680]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Host	#Fishes	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence GQ260189 (>99% sequence identity) for Paracoccus fistulariae subclade from Microbeatlas

Aquatic Samples	35
Soil Samples
Animal Samples	15
Plant Samples
Total Samples	50

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #29821]	Paracoccus sp. 22-5 16S ribosomal RNA gene, partial sequence	GQ260189	1383	GenBank	658446 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Paracoccus fistulariae KCTC 22803	GCA_028553785	complete	GenBank	658446 tax ID	*

[Ref.: #29821]

GC-content

63.6 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Paracoccus fistulariae KCTC 22803 NCBI: GCA_028553785.1
[Ref.: #69480]	motile	no	72.714	no
[Ref.: #69480]	flagellated	no	88.14	yes
[Ref.: #69480]	gram-positive	no	97.443	no
[Ref.: #69480]	anaerobic	no	98.337	no
[Ref.: #69480]	aerobic	yes	89.773	yes
[Ref.: #69480]	halophile	no	65.891	no
[Ref.: #69480]	spore-forming	no	97.182	yes
[Ref.: #69480]	glucose-ferment	no	83.884	no
[Ref.: #69480]	thermophile	no	96.243	yes
[Ref.: #69480]	glucose-util	yes	89.636	yes

Availability in culture collections External links

[Ref.: #29821]

Culture collection no.

KCTC 22803, CCUG 58401

[Ref.: #91529]

SI-ID 374141

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Paracoccus amoyensis sp. nov., isolated from the surface seawater along the coast of Xiamen Island, China.	Lyu L, Lai Q, Li J, Yu Z, Shao Z	Int J Syst Evol Microbiol	10.1099/ijsem.0.004685	2021	*
Phylogeny	Paracoccus fistulariae sp. nov., a lipolytic bacterium isolated from bluespotted cornetfish, Fistularia commersonii.	Kim YO, Kong HJ, Park S, Kang SJ, Kim KK, Moon DY, Oh TK, Yoon JH	Int J Syst Evol Microbiol	10.1099/ijs.0.021808-0	2010	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29821

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26198 (see below)

#61680 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 58401

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#91529

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID374141.1 )

#26198

IJSEM 2908 2010 ( DOI 10.1099/ijs.0.021808-0 , PubMed 20097797 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Paracoccus fistulariae in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Paracoccus fistulariae KCTC 22803

Change proposal

Change proposal