Name: Salinimicrobium marinum KCTC 12719
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133600

Type strain:

Species: Salinimicrobium marinum

Culture col. no.: KCTC 12719, LMG 25395, KMM 6270, KCTC 23286

Strain history: <- OI Nedashkovskaya, KMM, Russia

NCBI tax ID(s): 680283 (species)

Section

Salinimicrobium marinum KCTC 12719 is a facultative anaerobe, Gram-negative, motile bacterium that was isolated from seawater.

Gram-negative
motile
rod-shaped
facultative anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Salinimicrobium*
	Species	**Salinimicrobium marinum**
	Full Scientific Name (LPSN)	Salinimicrobium marinum Nedashkovskaya et al. 2010

Information on morphological and physiological properties Morphology

[Ref.: #29707]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.968

[Ref.: #29707]	Cell length	1.2-4 µm

[Ref.: #29707]	Cell width	0.5-1 µm

[Ref.: #29707]	Cell shape	rod-shaped

[Ref.: #29707]	Motility	yes
[Ref.: #67771]	Motility	yes

[Ref.: #29707]	Flagellum arrangement	gliding
[Ref.: #67771]	Flagellum arrangement	gliding

[Ref.: #29707]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #29707]	growth	04-41 °C
[Ref.: #29707]	optimum	28-32 °C
[Ref.: #67771]	growth	28-32 °C

[Ref.: #29707]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #29707]			optimum	7
[Ref.: #29707]			growth	7

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29707]	Oxygen tolerance	facultative anaerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #29707]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.997

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29707]		NaCl		growth	0.5-15	%
[Ref.: #29707]		NaCl		optimum	4	%

[Ref.: #29707]	Observation	aggregates in chains
[Ref.: #67771]	Observation	quinones: MK-6

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29707]	arabinose ChEBI	+	carbon source
[Ref.: #29707]	esculin ChEBI	+	hydrolysis
[Ref.: #29707]	fructose ChEBI	+	carbon source
[Ref.: #29707]	fucose ChEBI	+	carbon source
[Ref.: #29707]	galactose ChEBI	+	carbon source
[Ref.: #29707]	glucose ChEBI	+	carbon source
[Ref.: #29707]	lactose ChEBI	+	carbon source
[Ref.: #29707]	maltose ChEBI	+	carbon source
[Ref.: #29707]	mannose ChEBI	+	carbon source
[Ref.: #29707]	nitrate ChEBI	+	reduction
[Ref.: #29707]	raffinose ChEBI	+	carbon source
[Ref.: #29707]	sucrose ChEBI	+	carbon source
[Ref.: #29707]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #29707]		catalase	+	1.11.1.6
[Ref.: #29707]		cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #29707]	Sample type/isolated from	seawater

[Ref.: #67771]	Sample type/isolated from	From sediments
[Ref.: #67771]	Geographic location (country and/or sea, region)	Japan Sea
[Ref.: #67771]	Country	Russia
[Ref.: #67771]	Country ISO 3 Code	RUS
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Marine

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence GQ866112 (>99% sequence identity) for Salinimicrobium marinum subclade from Microbeatlas

Aquatic Samples	11
Soil Samples
Animal Samples
Plant Samples
Total Samples	11

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #29707]	Salinimicrobium sp. KMM 6270 16S ribosomal RNA gene, partial sequence	GQ866112	1474	GenBank	680283 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Salinimicrobium marinum KCTC 12719	GCA_014651535	contig	GenBank	680283 tax ID	*
[Ref.: #66792]	Salinimicrobium marinum strain KCTC 12719	680283.3	wgs	PATRIC	680283 tax ID	*

[Ref.: #29707]

GC-content

40.9 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Salinimicrobium marinum strain KCTC 12719 PATRIC: 680283.3
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Salinimicrobium marinum strain KCTC 12719 PATRIC: 680283.3
[Ref.: #69480]	gram-positive	no	97.149	yes
[Ref.: #69480]	anaerobic	no	99.153	no
[Ref.: #69480]	halophile	yes	59.85	no
[Ref.: #69480]	spore-forming	no	95.561	no
[Ref.: #69480]	glucose-util	yes	85.851	no
[Ref.: #69480]	flagellated	no	94.526	yes
[Ref.: #69480]	thermophile	no	99.547	yes
[Ref.: #69480]	aerobic	yes	89.194	no
[Ref.: #69480]	glucose-ferment	no	88.066	no
[Ref.: #69480]	motile	no	85.831	no

Availability in culture collections External links

[Ref.: #29707]

Culture collection no.

KCTC 12719, LMG 25395, KMM 6270, KCTC 23286

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Salinimicrobium marinum sp. nov., a halophilic bacterium of the family Flavobacteriaceae, and emended descriptions of the genus Salinimicrobium and Salinimicrobium catena.	Nedashkovskaya OI, Vancanneyt M, Kim SB, Han J, Zhukova NV, Shevchenko LS	Int J Syst Evol Microbiol	10.1099/ijs.0.019166-0	2009	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29707

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26090 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#26090

IJSEM 2303 2010 ( DOI 10.1099/ijs.0.019166-0 , PubMed 19915107 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Salinimicrobium marinum in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Salinimicrobium marinum strain KCTC 12719

Salinimicrobium marinum strain KCTC 12719

Change proposal

Change proposal