Name: Aequorivita aestuarii JC2436
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133599

Type strain:

Species: Aequorivita aestuarii

Strain Designation: JC2436

Culture col. no.: IMSNU 14137, KACC 13727, KCTC 22361, JCM 15496

Strain history: <- J Chun, Seoul Nat. Univ.

NCBI tax ID(s): 524290 (species)

Section

Aequorivita aestuarii JC2436 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from tidal flat sediment.

Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Aequorivita*
	Species	**Aequorivita aestuarii**
	Full Scientific Name (LPSN)	Aequorivita aestuarii (Kim et al. 2010) Hahnke et al. 2017

Synonym

Vitellibacter aestuarii

Information on morphological and physiological properties Morphology

[Ref.: #29701]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative

[Ref.: #29701]	Cell length	8 µm

[Ref.: #29701]	Cell shape	rod-shaped

[Ref.: #29701]	Motility	no

[Ref.: #29701]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #29701]	growth	10-41 °C
[Ref.: #29701]	optimum	30-35 °C
[Ref.: #67770]	growth	30 °C
[Ref.: #67771]	growth	30 °C

[Ref.: #29701]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29701]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #29701]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29701]		NaCl		growth	02-06	%
[Ref.: #29701]		NaCl		optimum	02-03	%

[Ref.: #29701]	Observation	aggregates in chains
[Ref.: #67770]	Observation	quinones: MK-6
[Ref.: #67771]	Observation	quinones: MK-6

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #29701]		alkaline phosphatase	+	3.1.3.1
[Ref.: #29701]		cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #29701]	Sample type/isolated from	tidal flat sediment

[Ref.: #67770]	Sample type/isolated from	Tidal-flat sediment of Oi Island
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From tidal flat sediment
[Ref.: #67771]	Geographic location (country and/or sea, region)	Oi-island
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Tidal flat
#Environmental	#Terrestrial	#Sediment

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EU642844 (>99% sequence identity) for Aequorivita aestuarii subclade from Microbeatlas

Aquatic Samples	112
Soil Samples	20
Animal Samples	63
Plant Samples
Total Samples	195

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #29701]	Vitellibacter aestuarii strain JC2436 16S ribosomal RNA gene, partial sequence	EU642844	1448	GenBank	524290 tax ID

[Ref.: #67770]	GC-content	48.7 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67771]	GC-content	48.7 mol%

Availability in culture collections External links

[Ref.: #29701]

Culture collection no.

IMSNU 14137, KACC 13727, KCTC 22361, JCM 15496

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Vitellibacter echinoideorum sp. nov., isolated from a sea urchin (Tripneustes gratilla).	Lin SY, Hameed A, Wen CZ, Liu YC, Hsu YH, Shen FT, Lai WA, Young CC	Int J Syst Evol Microbiol	10.1099/ijs.0.000258	2015	*
Phylogeny	Aureisphaera galaxeae gen. nov., sp. nov., a marine member of the family Flavobacteriaceae isolated from the hard coral Galaxea fascicularis.	Yoon J, Yasumoto-Hirose M, Kasai H	Antonie Van Leeuwenhoek	10.1007/s10482-015-0432-4	2015	*
Phylogeny	Vitellibacter aestuarii sp. nov., isolated from tidal-flat sediment, and an emended description of the genus Vitellibacter.	Kim BS, Kim OS, Moon EY, Chun J	Int J Syst Evol Microbiol	10.1099/ijs.0.019034-0	2009	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29701

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26084 (see below)

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#26084

IJSEM 1989 2010 ( DOI 10.1099/ijs.0.019034-0 , PubMed 19801392 )

* These data were automatically processed and therefore are not curated

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