Name: Natronoarchaeum mannanilyticum YSM-123
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133573

Type strain:

Species: Natronoarchaeum mannanilyticum

Strain Designation: YSM-123

Culture col. no.: JCM 16328, CECT 7565

Strain history: Y. Shimane YSM-123.

NCBI tax ID(s): 926360 (species)

SI-ID 371195

CECT 7565, JCM 16328

Section

Natronoarchaeum mannanilyticum YSM-123 is an aerobe, Gram-negative, rod-shaped archaeon that was isolated from seawater.

Gram-negative
rod-shaped
aerobe
16S sequence
Archaea

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Archaea"
	Phylum	*Methanobacteriota*
	Class	*Halobacteria*
	Order	*Halobacteriales*
	Family	*Natronoarchaeaceae*
	Genus	*Natronoarchaeum*
	Species	**Natronoarchaeum mannanilyticum**
	Full Scientific Name (LPSN)	Natronoarchaeum mannanilyticum Shimane et al. 2010

Information on morphological and physiological properties Morphology

[Ref.: #29592]	Gram stain	negative

[Ref.: #29592]	Cell length	01-05 µm

[Ref.: #29592]	Cell shape	rod-shaped

[Ref.: #29592]	Motility	no

[Ref.: #29592]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #29592]	growth	20-55 °C
[Ref.: #29592]	optimum	37 °C
[Ref.: #67770]	growth	37 °C

[Ref.: #29592]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #29592]			optimum	08-09
[Ref.: #29592]			growth	5.8-9.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29592]

Oxygen tolerance

aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29592]		NaCl		growth	11-27	%
[Ref.: #29592]		NaCl		optimum	21-25	%

[Ref.: #29592]

Observation

aggregates in chains

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29592]	cellobiose ChEBI	+	carbon source
[Ref.: #29592]	glucose ChEBI	+	carbon source
[Ref.: #29592]	lactose ChEBI	+	carbon source
[Ref.: #29592]	mannose ChEBI	+	carbon source
[Ref.: #29592]	raffinose ChEBI	+	carbon source

	Metabolite production	Metabolite	Production
[Ref.: #29592]		indole ChEBI	yes

	Physiological tests	Metabolite	Indole test
[Ref.: #29592]		indole ChEBI	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #29592]	Sample type/isolated from	seawater

[Ref.: #67770]	Sample type/isolated from	Commercial salt made from Japanese seawater
[Ref.: #67770]	Geographic location (country and/or sea, region)	Niigata Pref.
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Marine

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB501360 (>99% sequence identity) for Natronoarchaeum from Microbeatlas

Aquatic Samples	3
Soil Samples	1
Animal Samples
Plant Samples	1
Total Samples	5

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #29592]	Natronoarchaeum mannanilyticum gene for 16S rRNA, partial sequence, note: rrnA	AB501361	1431	GenBank	926360 tax ID
[Ref.: #67770]	Natronoarchaeum mannanilyticum gene for 16S rRNA, partial sequence, note: rrnB	AB501360	1431	ENA	926360 tax ID

[Ref.: #29592]	GC-content	63 mol%
[Ref.: #67770]	GC-content	63 mol%	high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #29592]

Culture collection no.

JCM 16328, CECT 7565

[Ref.: #91511]

SI-ID 371195

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Natronoarchaeum rubrum sp. nov., isolated from a marine solar saltern, and emended description of the genus Natronoarchaeum.	Qiu XX, Zhao ML, Cui HL	Int J Syst Evol Microbiol	10.1099/ijs.0.059071-0	2014	*
Phylogeny	Natronoarchaeum philippinense sp. nov., a haloarchaeon isolated from commercial solar salt.	Shimane Y, Nagaoka S, Minegishi H, Kamekura M, Echigo A, Hatada Y, Ito T, Usami R	Int J Syst Evol Microbiol	10.1099/ijs.0.042549-0	2012	*
Phylogeny	Natronoarchaeum mannanilyticum gen. nov., sp. nov., an aerobic, extremely halophilic archaeon isolated from commercial salt.	Shimane Y, Hatada Y, Minegishi H, Mizuki T, Echigo A, Miyazaki M, Ohta Y, Usami R, Grant WD, Horikoshi K	Int J Syst Evol Microbiol	10.1099/ijs.0.016600-0	2009	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29592

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25984 (see below)

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#91511

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID371195.1 )

#25984

IJSEM 2529 2010 ( DOI 10.1099/ijs.0.016600-0 , PubMed 19965994 )

* These data were automatically processed and therefore are not curated

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