Natronoarchaeum mannanilyticum (JCM 16328, CECT 7565, YSM-123)

Name: Natronoarchaeum mannanilyticum (JCM 16328, CECT 7565, YSM-123)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 133573

Type strain

Strain Designation YSM-123

Culture col. no. JCM 16328 CECT 7565 YSM-123

NCBI tax ID(s) 926360

Special Collections JCM Literature strains

Links

Natronoarchaeum mannanilyticum YSM-123 is an aerobe, Gram-negative, rod-shaped prokaryote that was isolated from seawater.

Gram-negative rod-shaped aerobe genome sequence 16S sequence

Name and taxonomic classification

SI-ID 371195

CECT 7565,JCM 16328

@ref 20215

Last LPSN update 2025-12-16 10:01:49

Domain Methanobacteriati

Phylum Methanobacteriota

Class Halobacteria

Order Halobacteriales

Family Natronoarchaeaceae

Genus Natronoarchaeum

Species Natronoarchaeum mannanilyticum

Full scientific name Natronoarchaeum mannanilyticum Shimane et al. 2010

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell shape	Motility
29592	negative	01-05 µm	rod-shaped

Pigmentation

29592

Productionyes

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
29592	positive	growth	20-55
29592	positive	optimum	37	mesophilic
67770	positive	growth	37	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
29592	positive	optimum	08-09
29592	positive	growth	5.8-9.5	alkaliphile

Physiology and metabolism

Oxygen tolerance

29592

Oxygen toleranceaerobe

Halophily

@ref	Salt	Growth	Tested relation	Concentration
29592	NaCl	positive	growth	11-27 %
29592	NaCl	positive	optimum	21-25 %

Observation

29592

Observationaggregates in chains

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
29592	17057 ChEBI	cellobiose	+	carbon source
29592	17234 ChEBI	glucose	+	carbon source
29592	17716 ChEBI	lactose	+	carbon source
29592	37684 ChEBI	mannose	+	carbon source
29592	16634 ChEBI	raffinose	+	carbon source

Metabolite production

@ref	Chebi-ID	Metabolite	Production
29592	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
29592	35581 ChEBI	indole	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
29592	seawater
67770	Commercial salt made from Japanese seawater	Niigata Pref.	Japan	JPN	Asia

Taxonmaps

69479

Global distribution of 16S sequence AB501360 (>99% sequence identity) for Natronoarchaeum from Microbeatlas

Aquatic Samples	3
Soil Samples	1
Animal Samples
Plant Samples	1
Total Samples	5

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM3952266v1 assembly for Natronoarchaeum mannanilyticum JCM 16328	scaffold	GCA_039522665	926360	74.32

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
29592	Natronoarchaeum mannanilyticum gene for 16S rRNA, partial sequence, note: rrnA	AB501361	1431	926360
67770	Natronoarchaeum mannanilyticum gene for 16S rRNA, partial sequence, note: rrnB	AB501360	1431	926360
124043	Natronoarchaeum mannanilyticum gene for 16S rRNA, complete sequence, strain: JCM 16328.	AB663466	1471	926360
124043	Natronoarchaeum mannanilyticum gene for 16S ribosomal RNA, partial sequence, strain: JCM 16328.	AB935415	1471	926360

GC content

@ref	GC-content (mol%)	Method
29592	63
67770	63	high performance liquid chromatography (HPLC)

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Natronoarchaeum rubrum sp. nov., isolated from a marine solar saltern, and emended description of the genus Natronoarchaeum.	Qiu XX, Zhao ML, Cui HL	Int J Syst Evol Microbiol	10.1099/ijs.0.059071-0	2014
Phylogeny	Natronoarchaeum philippinense sp. nov., a haloarchaeon isolated from commercial solar salt.	Shimane Y, Nagaoka S, Minegishi H, Kamekura M, Echigo A, Hatada Y, Ito T, Usami R	Int J Syst Evol Microbiol	10.1099/ijs.0.042549-0	2012
Phylogeny	Natronoarchaeum mannanilyticum gen. nov., sp. nov., an aerobic, extremely halophilic archaeon isolated from commercial salt.	Shimane Y, Hatada Y, Minegishi H, Mizuki T, Echigo A, Miyazaki M, Ohta Y, Usami R, Grant WD, Horikoshi K	Int J Syst Evol Microbiol	10.1099/ijs.0.016600-0	2009

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#25984	IJSEM 2529 2010 ( DOI 10.1099/ijs.0.016600-0 , PubMed 19965994 )
#29592	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25984
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Natronoarchaeum mannanilyticum (JCM 16328, CECT 7565, YSM-123)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Halophily

Observation

Metabolite utilization

Metabolite production

Metabolite tests

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_039522665

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

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