Name: Psychrobacter aestuarii KCTC 22503
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 133574

Type strain:

Species: Psychrobacter aestuarii

Culture col. no.: KCTC 22503, JCM 16343, SC 35, CIP 110994

Strain history: CIP <- 2016, JCM <- 2009, C.N Seong, Sunchon Univ., Suncheon, Korea: strain SC35

NCBI tax ID(s): 556327 (species)

SI-ID 414061

CIP 110994

Special Collections

Section

When using BacDive for research please cite our paper

Psychrobacter aestuarii KCTC 22503 is an aerobe, Gram-negative, ovoid-shaped bacterium that was isolated from Tidal flat sediment.

Gram-negative
ovoid-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Pseudomonadales*
	Family	*Moraxellaceae*
	Genus	*Psychrobacter*
	Species	**Psychrobacter aestuarii**
	Full Scientific Name (LPSN)	Psychrobacter aestuarii Baik et al. 2010

Information on morphological and physiological properties Morphology

[Ref.: #29600]	Gram stain	negative
[Ref.: #116097]	Gram stain	negative

[Ref.: #29600]	Cell length	1.15 µm

[Ref.: #29600]	Cell width	0.65 µm

[Ref.: #29600]	Cell shape	ovoid-shaped
[Ref.: #116097]	Cell shape	oval-shaped

[Ref.: #29600]	Motility	no
[Ref.: #116097]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #41743]

Culture medium

Marine agar (MA)

[Ref.: #41743]

Culture medium growth

[Ref.: #41743]

Culture medium composition

expand / minimize

[Ref.: #116097]

Culture medium

CIP Medium 13

[Ref.: #116097]

Culture medium growth

[Ref.: #116097]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #29600]	growth	04-37 °C
[Ref.: #29600]	optimum	25 °C
[Ref.: #41743]	growth	30 °C
[Ref.: #67770]	growth	30 °C

	pH	Kind of pH		pH
[Ref.: #29600]			optimum	7.5
[Ref.: #29600]			growth	07-09

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29600]

Oxygen tolerance

aerobe

[Ref.: #29600]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29600]		NaCl		growth	0-4	%
[Ref.: #29600]		NaCl		optimum	1.5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29600]	acetate ChEBI	+	carbon source
[Ref.: #29600]	alanine ChEBI	+	carbon source
[Ref.: #29600]	alpha-cyclodextrin ChEBI	+	carbon source
[Ref.: #29600]	asparagine ChEBI	+	carbon source
[Ref.: #29600]	citrate ChEBI	+	carbon source
[Ref.: #29600]	esculin ChEBI	+	hydrolysis
[Ref.: #29600]	glutamate ChEBI	+	carbon source
[Ref.: #29600]	glycogen ChEBI	+	carbon source
[Ref.: #29600]	L-alaninamide ChEBI	+	carbon source
[Ref.: #29600]	lactate ChEBI	+	carbon source
[Ref.: #29600]	leucine ChEBI	+	carbon source
[Ref.: #29600]	methyl pyruvate ChEBI	+	carbon source
[Ref.: #29600]	ornithine ChEBI	+	carbon source
[Ref.: #29600]	phenylalanine ChEBI	+	carbon source
[Ref.: #29600]	phenylethylamine ChEBI	+	carbon source
[Ref.: #29600]	proline ChEBI	+	carbon source
[Ref.: #29600]	quinate ChEBI	+	carbon source
[Ref.: #29600]	succinate ChEBI	+	carbon source
[Ref.: #29600]	tween 40 ChEBI	+	carbon source
[Ref.: #29600]	tween 80 ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #29600]		catalase	+	1.11.1.6
[Ref.: #29600]		cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Tidal flat sediment

[Ref.: #116097]	Sample type/isolated from	Environment, Tidal flat sediment
[Ref.: #116097]	Geographic location (country and/or sea, region)	Suncheon Bay
[Ref.: #116097]	Country	Republic of Korea
[Ref.: #116097]	Country ISO 3 Code	KOR
[Ref.: #116097]	Continent	Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence EU939718 (>99% sequence identity) for Psychrobacter aestuarii subclade from Microbeatlas

Aquatic Samples	125
Soil Samples	9
Animal Samples	31
Plant Samples	3
Total Samples	168

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #116097]

Biosafety level

Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #29600]	Psychrobacter aestuarii strain SC35 16S ribosomal RNA gene, partial sequence	EU939718	1424	GenBank ENA	556327 tax ID

[Ref.: #29600]	GC-content	48.5 mol%
[Ref.: #67770]	GC-content	48.5 mol%	thermal denaturation, midpoint method (Tm)

Availability in culture collections External links

[Ref.: #29600]

Culture collection no.

KCTC 22503, JCM 16343, SC 35, CIP 110994

[Ref.: #91512]

SI-ID 414061

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Psychrobacter aestuarii sp. nov., isolated from a tidal flat sediment.	Baik KS, Park SC, Lim CH, Lee KH, Jeon DY, Kim CM, Seong CN	Int J Syst Evol Microbiol	10.1099/ijs.0.016782-0	2009	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29600

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25991 (see below)

#41743 ; Curators of the CIP;
#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#91512

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID414061.1 )

#116097 Collection of Institut Pasteur ; Curators of the CIP; CIP 110994

#25991

IJSEM 1631 2010 ( DOI 10.1099/ijs.0.016782-0 , PubMed 19717579 )

* These data were automatically processed and therefore are not curated

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