Name: Pontibacter xinjiangensis 311-10
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133530

Type strain:

Species: Pontibacter xinjiangensis

Strain Designation: 311-10

Culture col. no.: CCTCC AB 207200, NRRL B-51335

NCBI tax ID(s): 557332 (species)

Section

Pontibacter xinjiangensis 311-10 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from soil.

Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Cytophagia*
	Order	*Cytophagales*
	Family	*Hymenobacteraceae*
	Genus	*Pontibacter*
	Species	**Pontibacter xinjiangensis**
	Full Scientific Name (LPSN)	Pontibacter xinjiangensis Wang et al. 2010

Information on morphological and physiological properties Morphology

[Ref.: #29351]	Gram stain	negative

[Ref.: #29351]	Cell length	1.6 µm

[Ref.: #29351]	Cell width	0.5 µm

[Ref.: #29351]	Cell shape	rod-shaped

[Ref.: #29351]	Motility	no

[Ref.: #29351]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #29351]			growth	04-37 °C
[Ref.: #29351]			optimum	30 °C

[Ref.: #29351]

Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #29351]			growth	06-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29351]

Oxygen tolerance

aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29351]		NaCl		growth	0-5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29351]	cellobiose ChEBI	+	carbon source
[Ref.: #29351]	dextrin ChEBI	+	carbon source
[Ref.: #29351]	esculin ChEBI	+	hydrolysis
[Ref.: #29351]	fructose ChEBI	+	carbon source
[Ref.: #29351]	galactose ChEBI	+	carbon source
[Ref.: #29351]	gluconate ChEBI	+	carbon source
[Ref.: #29351]	glucose ChEBI	+	carbon source
[Ref.: #29351]	glutamate ChEBI	+	carbon source
[Ref.: #29351]	glycogen ChEBI	+	carbon source
[Ref.: #29351]	lactose ChEBI	+	carbon source
[Ref.: #29351]	leucine ChEBI	+	carbon source
[Ref.: #29351]	maltose ChEBI	+	carbon source
[Ref.: #29351]	mannitol ChEBI	+	carbon source
[Ref.: #29351]	mannose ChEBI	+	carbon source
[Ref.: #29351]	methyl D-glucoside ChEBI	+	carbon source
[Ref.: #29351]	raffinose ChEBI	+	carbon source
[Ref.: #29351]	rhamnose ChEBI	+	carbon source
[Ref.: #29351]	sucrose ChEBI	+	carbon source
[Ref.: #29351]	trehalose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #29351]	acid phosphatase	+	3.1.3.2
[Ref.: #29351]	alkaline phosphatase	+	3.1.3.1
[Ref.: #29351]	alpha-galactosidase	+	3.2.1.22
[Ref.: #29351]	catalase	+	1.11.1.6
[Ref.: #29351]	gelatinase	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #29351]	Sample type/isolated from	soil
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FJ004994 (>99% sequence identity) for Pontibacter xinjiangensis subclade from Microbeatlas

Aquatic Samples	37
Soil Samples	137
Animal Samples	23
Plant Samples	18
Total Samples	215

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #29351]	Pontibacter xinjiangensis strain 311-10 16S ribosomal RNA gene, partial sequence	FJ004994	1448	GenBank	557332 tax ID

[Ref.: #29351]

GC-content

47.8 mol%

Availability in culture collections External links

[Ref.: #29351]

Culture collection no.

CCTCC AB 207200, NRRL B-51335

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pontibacter xinjiangensis sp. nov., in the phylum 'Bacteroidetes', and reclassification of [Effluviibacter] roseus as Pontibacter roseus comb. nov.	Wang Y, Zhang K, Cai F, Zhang L, Tang Y, Dai J, Fang C	Int J Syst Evol Microbiol	10.1099/ijs.0.011395-0	2009	*
Phylogeny	Pontibacter brevis sp. nov., isolated from rhizosphere soil of Tamarix ramosissima.	Osman G, Gao Y, Wang N, Mahmud O, Sun J, Zhang T, Zhan F, Zhang Z, Lou K	Int J Syst Evol Microbiol	10.1099/ijsem.0.002455	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29351

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25763 (see below)

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#25763

IJSEM 99 2010 ( DOI 10.1099/ijs.0.011395-0 , PubMed 19648348 )

* These data were automatically processed and therefore are not curated

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