Name: Dehalogenimonas lykanthroporepellens BL-DC-9
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133531

Type strain:

Species: Dehalogenimonas lykanthroporepellens

Strain Designation: BL-DC-9

Culture col. no.: ATCC BAA 1523, JCM 15061

NCBI tax ID(s): 552810 (species)

Section

Dehalogenimonas lykanthroporepellens BL-DC-9 is an anaerobe, Gram-negative, coccus-shaped bacterium that was isolated from freshwater .

coccus-shaped
Gram-negative
anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Chloroflexota*
	Class	*Dehalococcoidia*
	Order	*Dehalococcoidales*
	Family	*Dehalococcoidaceae*
	Genus	*Dehalogenimonas*
	Species	**Dehalogenimonas lykanthroporepellens**
	Full Scientific Name (PNU)	Dehalogenimonas lykanthroporepellens Moe et al. 2009

Information on morphological and physiological properties Morphology

[Ref.: #29357]	Gram stain	negative
[Ref.: #29357]	Cell shape	coccus-shaped
[Ref.: #29357]	Motility	no

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #29357]			growth	20-34 °C
[Ref.: #29357]			optimum	31 °C

[Ref.: #29357]

Temperature range

mesophilic

	pH	Kind of pH		pH	pH range
[Ref.: #29357]			optimum	7-7.5
[Ref.: #29357]			growth	06-08

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29357]

Oxygen tolerance

anaerobe

[Ref.: #29357]

Ability of spore formation

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #29357]	Sample type/isolated from	freshwater (river, lake, pond)
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Freshwater
#Environmental	#Aquatic	#Lake (large)
#Environmental	#Aquatic	#Pond (small)
#Environmental	#Aquatic	#River (Creek)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EU679419 (>99% sequence identity) for Dehalogenimonas lykanthroporepellens subclade from Microbeatlas

Aquatic Samples	1481
Soil Samples	502
Animal Samples	29
Plant Samples	25
Total Samples	2037

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #29357]	Chloroflexi bacterium BL-DC-9 16S ribosomal RNA gene, partial sequence	EU679419	1421	GenBank	552811 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Dehalogenimonas lykanthroporepellens BL-DC-9 BL-DC-9	GCA_000143165	complete	GenBank	552811 tax ID	*
[Ref.: #66792]	Dehalogenimonas lykanthroporepellens BL-DC-9	552811.9	complete	PATRIC	552811 tax ID	*
[Ref.: #66792]	Dehalogenimonas lykanthroporepellens BL-DC-9	648028022	complete	JGI IMG/M	552811 tax ID	*
[Ref.: #66792]	Microcoleus sp. CAWBG50 CAWBG50	GCA_020883095	scaffold	PATRIC	2841646 tax ID	*

[Ref.: #29357]

GC-content

53.8 mol%

Availability in culture collections External links

[Ref.: #29357]

Culture collection no.

ATCC BAA 1523, JCM 15061

[Ref.: #20218]

Associated Passport(s) in StrainInfo

845755

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Dehalogenimonas lykanthroporepellens gen. nov., sp. nov., a reductively dehalogenating bacterium isolated from chlorinated solvent-contaminated groundwater.	Moe WM, Yan J, Nobre MF, da Costa MS, Rainey FA	Int J Syst Evol Microbiol	10.1099/ijs.0.011502-0	2009	*
Genetics	Complete genome sequence of Dehalogenimonas lykanthroporepellens type strain (BL-DC-9(T)) and comparison to "Dehalococcoides" strains.	Siddaramappa S, Challacombe JF, Delano SF, Green LD, Daligault H, Bruce D, Detter C, Tapia R, Han S, Goodwin L, Han J, Woyke T, Pitluck S, Pennacchio L, Nolan M, Land M, Chang YJ, Kyrpides NC, Ovchinnikova G, Hauser L, Lapidus A, Yan J, Bowman KS, da Costa MS, Rainey FA, Moe WM	Stand Genomic Sci	10.4056/sigs.2806097	2012	*
Metabolism	Dehalogenimonas lykanthroporepellens BL-DC-9T simultaneously transcribes many rdhA genes during organohalide respiration with 1,2-DCA, 1,2-DCP, and 1,2,3-TCP as electron acceptors.	Mukherjee K, Bowman KS, Rainey FA, Siddaramappa S, Challacombe JF, Moe WM	FEMS Microbiol Lett	10.1111/1574-6968.12434	2014	*
	Dehalogenimonas spp. can Reductively Dehalogenate High Concentrations of 1,2-Dichloroethane, 1,2-Dichloropropane, and 1,1,2-Trichloroethane.	Maness AD, Bowman KS, Yan J, Rainey FA, Moe WM	AMB Express	10.1186/2191-0855-2-54	2012	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#29357

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25769 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#25769

IJSEM 2692 2009 ( DOI 10.1099/ijs.0.011502-0 , PubMed 19625421 )

* These data were automatically processed and therefore are not curated

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