Name: Mucilaginibacter rigui WPCB133
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133527

Type strain:

Species: Mucilaginibacter rigui

Strain Designation: WPCB133

Culture col. no.: KCTC 12534, NBRC 101115

Strain history: <- KS Baik, MicroID, Co. Ltd.

NCBI tax ID(s): 534635 (species)

Section

Mucilaginibacter rigui WPCB133 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from freshwater .

Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Sphingobacteriia*
	Order	*Sphingobacteriales*
	Family	*Sphingobacteriaceae*
	Genus	*Mucilaginibacter*
	Species	**Mucilaginibacter rigui**
	Full Scientific Name (LPSN)	Mucilaginibacter rigui Baik et al. 2010

Information on morphological and physiological properties Morphology

[Ref.: #29337]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative

[Ref.: #29337]	Cell length	1.35 µm

[Ref.: #29337]	Cell width	0.35 µm

[Ref.: #29337]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #29337]	Motility	no
[Ref.: #67771]	Motility	no

[Ref.: #29337]

Pigment production

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #29337]	growth	04-37 °C
[Ref.: #29337]	optimum	25 °C
[Ref.: #67771]	growth	25 °C

[Ref.: #29337]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #29337]			optimum	6.5
[Ref.: #29337]			growth	05-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29337]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #29337]	Ability of spore formation	no
[Ref.: #67771]	Ability of spore formation	no

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29337]		NaCl		growth	<1	%

[Ref.: #67771]

Observation

quinones: MK-7

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29337]	cellobiose ChEBI	+	carbon source
[Ref.: #29337]	dextrin ChEBI	+	carbon source
[Ref.: #29337]	esculin ChEBI	+	hydrolysis
[Ref.: #29337]	glucose ChEBI	+	carbon source
[Ref.: #29337]	lactose ChEBI	+	carbon source
[Ref.: #29337]	maltose ChEBI	+	carbon source
[Ref.: #29337]	mannose ChEBI	+	carbon source
[Ref.: #29337]	melibiose ChEBI	+	carbon source
[Ref.: #29337]	methyl D-glucoside ChEBI	+	carbon source
[Ref.: #29337]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #29337]	raffinose ChEBI	+	carbon source
[Ref.: #29337]	sucrose ChEBI	+	carbon source
[Ref.: #29337]	trehalose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #29337]	acid phosphatase	+	3.1.3.2
[Ref.: #29337]	alkaline phosphatase	+	3.1.3.1
[Ref.: #29337]	alpha-galactosidase	+	3.2.1.22
[Ref.: #29337]	catalase	+	1.11.1.6
[Ref.: #29337]	cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #29337]	Sample type/isolated from	freshwater (river, lake, pond)

[Ref.: #67771]	Sample type/isolated from	From freshwater
[Ref.: #67771]	Geographic location (country and/or sea, region)	Woopo wetland
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Freshwater
#Environmental	#Aquatic	#Lake (large)
#Environmental	#Aquatic	#Pond (small)
#Environmental	#Aquatic	#River (Creek)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EU747841 (>99% sequence identity) for Mucilaginibacter from Microbeatlas

Aquatic Samples	432
Soil Samples	1297
Animal Samples	517
Plant Samples	367
Total Samples	2613

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #29337]	Mucilaginibacter rigui strain WPCB133 16S ribosomal RNA gene, partial sequence	EU747841	1426	GenBank	534635 tax ID

[Ref.: #29337]	GC-content	47 mol%
[Ref.: #67771]	GC-content	47.0 mol%

Availability in culture collections External links

[Ref.: #29337]

Culture collection no.

KCTC 12534, NBRC 101115

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Mucilaginibacter rigui sp. nov., isolated from wetland freshwater, and emended description of the genus Mucilaginibacter.	Baik KS, Park SC, Kim EM, Lim CH, Seong CN	Int J Syst Evol Microbiol	10.1099/ijs.0.011130-0	2009	*
Phylogeny	Mucilaginibacter glaciei sp. nov. and Mucilaginibacter pankratovii sp. nov., isolated from a glacier on the Tibetan Plateau.	Yang LL, Pang Y, Liu HC, Xin YH, Liu Q	Int J Syst Evol Microbiol	10.1099/ijsem.0.004585	2020	*
Phylogeny	Mucilaginibacter terrigena sp. nov. sp., A Novel Member of the Family Sphingobacteriaceae.	Ten LN, Jeon NY, Li W, Cho YJ, Kim MK, Lee SY, Rooney AP, Jung HY	Curr Microbiol	10.1007/s00284-019-01748-y	2019	*
Phylogeny	Mucilaginibacter litoreus sp. nov., isolated from marine sand.	Yoon JH, Kang SJ, Park S, Oh TK	Int J Syst Evol Microbiol	10.1099/ijs.0.034900-0	2012	*
Phylogeny	Mucilaginibacter lutimaris sp. nov., isolated from a tidal flat sediment.	Kim JH, Kang SJ, Jung YT, Oh TK, Yoon JH	Int J Syst Evol Microbiol	10.1099/ijs.0.030213-0	2011	*
Phylogeny	Mucilaginibacter dorajii sp. nov., isolated from the rhizosphere of Platycodon grandiflorum.	Kim BC, Lee KH, Kim MN, Lee J, Shin KS	FEMS Microbiol Lett	10.1111/j.1574-6968.2010.02026.x	2010	*
Phylogeny	Mucilaginibacter aquariorum sp. nov., Isolated from Fresh Water.	Le VV, Ko SR, Kang M, Oh HM, Ahn CY	J Microbiol Biotechnol	10.4014/jmb.2208.08021	2022	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29337

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25749 (see below)

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#25749

IJSEM 134 2010 ( DOI 10.1099/ijs.0.011130-0 , PubMed 19648338 )

* These data were automatically processed and therefore are not curated

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