Name: Campylobacter subantarcticus R-3023
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133526

Type strain:

Species: Campylobacter subantarcticus

Strain Designation: R-3023

Culture col. no.: LMG 24377, CCUG 38513

NCBI tax ID(s): 1388752 (strain), 497724 (species)

SI-ID 17546

CCUG 38513, LMG 24377

Other strains from Campylobacter subantarcticus

C. subantarcticus CCUG 38507
C. subantarcticus CCUG 38508
C. subantarcticus CCUG 38510
C. subantarcticus CCUG 38511
C. subantarcticus CCUG 38514

Section

Campylobacter subantarcticus R-3023 is a microaerophile, Gram-negative, motile bacterium that was isolated from Wild birds.

Gram-negative
motile
rod-shaped
microaerophile
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Epsilonproteobacteria*
	Order	*Campylobacterales*
	Family	*Campylobacteraceae*
	Genus	*Campylobacter*
	Species	**Campylobacter subantarcticus**
	Full Scientific Name (LPSN)	Campylobacter subantarcticus Debruyne et al. 2010

Information on morphological and physiological properties Morphology

[Ref.: #29333]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.994

[Ref.: #29333]	Cell shape	rod-shaped

[Ref.: #29333]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %92.815

[Ref.: #29333]

Pigment production

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #29333]			growth	37-42 °C
[Ref.: #54302]			growth	37-42 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29333]	Oxygen tolerance	microaerophile
[Ref.: #54302]	Oxygen tolerance	microaerophile

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.998

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29333]		NaCl		growth	2	%

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #29333]		catalase	+	1.11.1.6
[Ref.: #29333]		cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #29333]	Sample type/isolated from	Wild birds

[Ref.: #54302]	Sample type/isolated from	Albatross feces,grey headed (Diomedea chrysostoma)
[Ref.: #54302]	Sampling date	1996-03-05
[Ref.: #54302]	Geographic location (country and/or sea, region)	South Georgian archipelag
[Ref.: #54302]	Country	Atlantic Ocean
* marker position based on {}

Isolation sources categories

#Host

#Birds

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #29333]	Campylobacter subantarcticus partial 16S rRNA gene, type strain LMG 24377T	AM933371	1485	GenBank	497724 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Campylobacter subantarcticus LMG 24377	GCA_000816305	complete	GenBank	1388752 tax ID	*
[Ref.: #66792]	Campylobacter subantarcticus LMG 24377	1388752.3	complete	PATRIC	1388752 tax ID	*

[Ref.: #29333]

GC-content

30 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Campylobacter subantarcticus LMG 24377 LMG 24377 NCBI: GCA_000816305.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Campylobacter subantarcticus LMG 24377 LMG 24377 NCBI: GCA_000816305.1
[Ref.: #69480]	motile	yes	88.263	yes
[Ref.: #69480]	flagellated	yes	62.739	no
[Ref.: #69480]	gram-positive	no	98.686	yes
[Ref.: #69480]	anaerobic	no	84.1	yes
[Ref.: #69480]	aerobic	no	97.942	yes
[Ref.: #69480]	halophile	no	79.26	no
[Ref.: #69480]	spore-forming	no	95.745	no
[Ref.: #69480]	glucose-util	no	84.449	no
[Ref.: #69480]	thermophile	no	74.126	no
[Ref.: #69480]	glucose-ferment	no	86.534	no

Availability in culture collections External links

[Ref.: #29333]

Culture collection no.

LMG 24377, CCUG 38513

[Ref.: #91488]

SI-ID 17546

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Campylobacter subantarcticus sp. nov., isolated from birds in the sub-Antarctic region.	Debruyne L, Broman T, Bergstrom S, Olsen B, On SLW, Vandamme P	Int J Syst Evol Microbiol	10.1099/ijs.0.011056-0	2009	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29333

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25745 (see below)

#54302 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 38513

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#91488

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID17546.1 )

#25745

IJSEM 815 2010 ( DOI 10.1099/ijs.0.011056-0 , PubMed 19661523 )

* These data were automatically processed and therefore are not curated

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Campylobacter subantarcticus LMG 24377 LMG 24377

Campylobacter subantarcticus LMG 24377 LMG 24377

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