Campylobacter subantarcticus (LMG 24377, CCUG 38513, R-3023)

Name: Campylobacter subantarcticus (LMG 24377, CCUG 38513, R-3023)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 133526

Type strain

Strain Designation R-3023

Culture col. no. LMG 24377 CCUG 38513 R-3023

NCBI tax ID(s) 1388752 497724

Special Collections CCUG Literature strains

Links

Campylobacter subantarcticus R-3023 is a microaerophile, Gram-negative, motile bacterium that was isolated from Wild birds.

Gram-negative motile rod-shaped microaerophile genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 17546

CCUG 38513,LMG 24377

@ref 20215

Last LPSN update 2026-02-09 11:31:58

Domain Bacteria

Phylum Pseudomonadota

Class Epsilonproteobacteria

Order Campylobacterales

Family Campylobacteraceae

Genus Campylobacter

Species Campylobacter subantarcticus

Full scientific name Campylobacter subantarcticus Debruyne et al. 2010

BacDive ID	Other strains from **Campylobacter subantarcticus** (5)	Type strain
149833	C. subantarcticus CCUG 38507
149834	C. subantarcticus CCUG 38508
149835	C. subantarcticus CCUG 38510
149836	C. subantarcticus CCUG 38511
149837	C. subantarcticus CCUG 38514

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
29333	negative	rod-shaped
125439	negative		99.5
125438	negative		97.455

Pigmentation

29333

Productionno

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
29333	positive	growth	37-42
54302	positive	growth	37-42

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
29333	microaerophile
54302	microaerophile

Spore formation

@ref	Spore formation	Confidence
125439		98.8
125438		97.434

Halophily

@ref	Salt	Growth	Tested relation	Concentration
29333	NaCl	positive	growth	2 %

Enzymes

@ref	Value	Activity	Ec
29333	catalase	+	1.11.1.6
29333	cytochrome oxidase	+	1.9.3.1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Host	#Birds

Isolation

@ref	Sample type	Sampling date	Geographic location	Country
29333	Wild birds
54302	Albatross feces,grey headed (Diomedea chrysostoma)	1996-03-05	South Georgian archipelag	Atlantic Ocean

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM81630v1 assembly for Campylobacter subantarcticus LMG 24377	complete	GCA_000816305	1388752.3	2627853822	1388752	97.74

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
29333	Campylobacter subantarcticus partial 16S rRNA gene, type strain LMG 24377T	AM933371	1485		497724

GC content

29333

GC-content (mol%)30

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Campylobacter subantarcticus LMG 24377
PATRIC: 1388752.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	98.80	no
125439	motility	BacteriaNetⓘ	yes	52.00	no
125439	gram_stain	BacteriaNetⓘ	negative	99.50	no
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	63.50	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Campylobacter subantarcticus LMG 24377 LMG 24377
NCBI: GCA_000816305.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.46	yes
125438	anaerobic	anaerobicⓘ	no	81.38	yes
125438	aerobic	aerobicⓘ	no	86.34	yes
125438	spore-forming	spore-formingⓘ	no	97.43	no
125438	thermophilic	thermophileⓘ	no	88.72	no
125438	flagellated	motile2+ⓘ	yes	63.25	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	In silico investigation of the genus Campylobacter type VI secretion system reveals genetic diversity in organization and putative effectors.	Robinson L, Liaw J, Omole Z, Corcionivoschi N, Hachani A, Gundogdu O.	Microb Genom	10.1099/mgen.0.000898	2022
Genetics	Comparative genomics of Campylobacter concisus: Analysis of clinical strains reveals genome diversity and pathogenic potential.	Gemmell MR, Berry S, Mukhopadhya I, Hansen R, Nielsen HL, Bajaj-Elliott M, Nielsen H, Hold GL.	Emerg Microbes Infect	10.1038/s41426-018-0118-x	2018
Genetics	Comparative genomics of the Campylobacter lari group.	Miller WG, Yee E, Chapman MH, Smith TP, Bono JL, Huynh S, Parker CT, Vandamme P, Luong K, Korlach J.	Genome Biol Evol	10.1093/gbe/evu249	2014
Metabolism	Methylation-dependent DNA discrimination in natural transformation of Campylobacter jejuni.	Beauchamp JM, Leveque RM, Dawid S, DiRita VJ.	Proc Natl Acad Sci U S A	10.1073/pnas.1703331114	2017
Phylogeny	Campylobacter subantarcticus sp. nov., isolated from birds in the sub-Antarctic region.	Debruyne L, Broman T, Bergstrom S, Olsen B, On SLW, Vandamme P	Int J Syst Evol Microbiol	10.1099/ijs.0.011056-0	2009

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#25745	IJSEM 815 2010 ( DOI 10.1099/ijs.0.011056-0 , PubMed 19661523 )
#29333	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25745
#54302	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 38513
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Campylobacter subantarcticus (LMG 24377, CCUG 38513, R-3023)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_000816305

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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