Name: Algoriphagus olei CC-Hsuan-617
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 133513

Type strain:

Species: Algoriphagus olei

Strain Designation: CC-Hsuan-617, Hsuan-617

Culture col. no.: BCRC 17886, CCUG 57471, DSM 22140

Strain history: <- P. Kämpfer, Univ. Giessen, Germany; CC-Hsuan-617

NCBI tax ID(s): 568072 (species)

SI-ID 407762

DSM 22140, CCUG 57471

Special Collections

Other strains from Algoriphagus olei

Section

Algoriphagus olei CC-Hsuan-617 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from soil.

Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Cytophagia*
	Order	*Cytophagales*
	Family	*Cyclobacteriaceae*
	Genus	*Algoriphagus*
	Species	**Algoriphagus olei**
	Full Scientific Name (LPSN)	Algoriphagus olei Young et al. 2009

Information on morphological and physiological properties Morphology

[Ref.: #29247]	Gram stain	negative

[Ref.: #29247]	Cell length	1.65 µm

[Ref.: #29247]	Cell width	0.5 µm

[Ref.: #29247]	Cell shape	rod-shaped

[Ref.: #29247]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #42637]

Culture medium

TRYPTONE SOYA BROTH (TSB) (DSMZ Medium 545)

[Ref.: #42637]

Culture medium growth

[Ref.: #42637]

Culture medium link

Medium recipe at MediaDive

[Ref.: #42637]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #29247]	growth	10-37 °C
[Ref.: #29247]	optimum	32 °C
[Ref.: #42637]	growth	28 °C

	pH	Kind of pH		pH
[Ref.: #29247]			optimum	8
[Ref.: #29247]			growth	07-09

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29247]

Oxygen tolerance

aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29247]		NaCl		growth	0-3	%
[Ref.: #29247]		NaCl		optimum	0.5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29247]	acetate ChEBI	+	carbon source
[Ref.: #29247]	alanine ChEBI	+	carbon source
[Ref.: #29247]	esculin ChEBI	+	hydrolysis
[Ref.: #29247]	fructose ChEBI	+	carbon source
[Ref.: #29247]	galactose ChEBI	+	carbon source
[Ref.: #29247]	glucose ChEBI	+	carbon source
[Ref.: #29247]	glutamate ChEBI	+	carbon source
[Ref.: #29247]	L-alaninamide ChEBI	+	carbon source
[Ref.: #29247]	lactose ChEBI	+	carbon source
[Ref.: #29247]	leucine ChEBI	+	carbon source
[Ref.: #29247]	maltose ChEBI	+	carbon source
[Ref.: #29247]	mannose ChEBI	+	carbon source
[Ref.: #29247]	melibiose ChEBI	+	carbon source
[Ref.: #29247]	methyl D-glucoside ChEBI	+	carbon source
[Ref.: #29247]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #29247]	ornithine ChEBI	+	carbon source
[Ref.: #29247]	propionate ChEBI	+	carbon source
[Ref.: #29247]	raffinose ChEBI	+	carbon source
[Ref.: #29247]	sucrose ChEBI	+	carbon source
[Ref.: #29247]	threonine ChEBI	+	carbon source
[Ref.: #29247]	trehalose ChEBI	+	carbon source
[Ref.: #29247]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #29247]		indole ChEBI	yes

	Physiological tests	Metabolite	Indole test
[Ref.: #29247]		indole ChEBI	+

	Enzyme	Enzyme activity	EC number
[Ref.: #29247]	acid phosphatase	+	3.1.3.2
[Ref.: #29247]	alkaline phosphatase	+	3.1.3.1
[Ref.: #29247]	catalase	+	1.11.1.6
[Ref.: #29247]	cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #29247]	Sample type/isolated from	soil

[Ref.: #42637]	Sample type/isolated from	oil-contaminated soil near an oil refinery
[Ref.: #42637]	Geographic location (country and/or sea, region)	Kaohsiung County
[Ref.: #42637]	Country	Taiwan, Province of China
[Ref.: #42637]	Country ISO 3 Code	TWN
[Ref.: #42637]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Contamination	#Oil (Fuel)
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FJ231215 (>99% sequence identity) for Algoriphagus olei from Microbeatlas

Aquatic Samples	153
Soil Samples	53
Animal Samples	47
Plant Samples	5
Total Samples	258

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #42637]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #29247]	Algoriphagus olei strain CC-Hsuan-617 16S ribosomal RNA gene, partial sequence	FJ231215	1468	GenBank ENA	568072 tax ID

[Ref.: #29247]

GC-content

43 mol%

Availability in culture collections External links

[Ref.: #42637]

Culture collection no.

BCRC 17886, CCUG 57471, DSM 22140

[Ref.: #91478]

SI-ID 407762

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Algoriphagus sanaruensis sp. nov., a member of the family Cyclobacteriaceae, isolated from a brackish lake in Hamamatsu, Japan.	Maejima Y, Iino T, Muraguchi Y, Ohkuma M, Kimbara K, Shintani M	Int J Syst Evol Microbiol	10.1099/ijsem.0.003447	2019	*
Phylogeny	Description of Algoriphagus taiwanensis sp. nov., a xylanolytic bacterium isolated from surface seawater, and emended descriptions of Algoriphagus mannitolivorans, Algoriphagus olei, Algoriphagus aquatilis and Algoriphagus ratkowskyi.	Shahina M, Hameed A, Lin SY, Lai WA, Hsu YH, Young CC	Antonie Van Leeuwenhoek	10.1007/s10482-014-0272-7	2014	*
Phylogeny	Algoriphagus shivajiensis sp. nov., isolated from Cochin back water, India.	Kumar PA, Bhumika V, Ritika C, Bhaskar YV, Priyashanth P, Aravind R, Bindu E, Srinivas TN	Syst Appl Microbiol	10.1016/j.syapm.2012.11.006	2013	*
Phylogeny	Algoriphagus olei sp. nov., isolated from oil-contaminated soil.	Young CC, Lin SY, Arun AB, Shen FT, Chen WM, Rekha PD, Langer S, Busse HJ, Wu YH, Kampfer P	Int J Syst Evol Microbiol	10.1099/ijs.0.009415-0	2009	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29247

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25667 (see below)

#42637

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22140

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#91478

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID407762.1 )

#25667

IJSEM 2909 2009 ( DOI 10.1099/ijs.0.009415-0 , PubMed 19628616 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Algoriphagus olei in external resources:
SILVA
BRENDA
PANGAEA
GBIF