Name: Ferruginibacter alkalilentus HU1-GD23
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133514

Type strain:

Species: Ferruginibacter alkalilentus

Strain Designation: HU1-GD23

Culture col. no.: KCTC 22306, LMG 4312, LMG 24312

Strain history: <- ST Lee, KAIST

NCBI tax ID(s): 563170 (species)

SI-ID 319129

LMG 24312, KCTC 22306

Section

Ferruginibacter alkalilentus HU1-GD23 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from freshwater sediment .

Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Chitinophagia*
	Order	*Chitinophagales*
	Family	*Chitinophagaceae*
	Genus	*Ferruginibacter*
	Species	**Ferruginibacter alkalilentus**
	Full Scientific Name (LPSN)	Ferruginibacter alkalilentus Lim et al. 2009

Information on morphological and physiological properties Morphology

[Ref.: #29250]	Gram stain	negative
[Ref.: #29250]	Cell length	2 µm
[Ref.: #29250]	Cell width	0.4 µm
[Ref.: #29250]	Cell shape	rod-shaped
[Ref.: #29250]	Motility	no

[Ref.: #67771]	Gram stain	negative

[Ref.: #67771]	Cell shape	rod-shaped
[Ref.: #67771]	Motility	no

[Ref.: #29250]

Pigment production

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #29250]			growth	18-30 °C
[Ref.: #67771]			growth	30 °C

[Ref.: #67771]

Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #29250]			growth	06-08

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29250]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #29250]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29250]		NaCl		growth	<0.5	%

[Ref.: #67771]

Observation

quinones: MK-7

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29250]	arabinose ChEBI	+	carbon source
[Ref.: #29250]	citrate ChEBI	+	carbon source
[Ref.: #29250]	esculin ChEBI	+	hydrolysis
[Ref.: #29250]	glucose ChEBI	+	carbon source
[Ref.: #29250]	melibiose ChEBI	+	carbon source
[Ref.: #29250]	raffinose ChEBI	+	carbon source
[Ref.: #29250]	trehalose ChEBI	+	carbon source
[Ref.: #29250]	xylitol ChEBI	+	carbon source
[Ref.: #29250]	xylose ChEBI	+	carbon source

	Enzyme	Enzyme activity	EC number
[Ref.: #29250]	catalase	+	1.11.1.6
[Ref.: #29250]	cytochrome oxidase	+	1.9.3.1
[Ref.: #29250]	gelatinase	+
[Ref.: #29250]	urease	+	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #29250]	Sample type/isolated from	freshwater sediment (river, lake, pond)

[Ref.: #67771]	Sample type/isolated from	From freshwater sediment
[Ref.: #67771]	Geographic location (country and/or sea, region)	littoral zone of Lake Hakha, Daejeon
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Freshwater
#Environmental	#Aquatic	#Lake (large)
#Environmental	#Aquatic	#Pond (small)
#Environmental	#Aquatic	#River (Creek)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FJ177530 (>99% sequence identity) for Ferruginibacter alkalilentus subclade from Microbeatlas

Aquatic Samples	72
Soil Samples	26
Animal Samples	7
Plant Samples	1
Total Samples	106

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #29250]	Sphingobacteriales bacterium HU1-GD23 16S ribosomal RNA gene, partial sequence	FJ177530	1470	GenBank	563170 tax ID

[Ref.: #29250]	GC-content	38.5-39.5 mol%
[Ref.: #67771]	GC-content	39.4 mol%

Availability in culture collections External links

[Ref.: #29250]

Culture collection no.

KCTC 22306, LMG 4312, LMG 24312

[Ref.: #91479]

SI-ID 319129

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Ferruginibacter paludis sp. nov., isolated from wetland freshwater, and emended descriptions of Ferruginibacter lapsinanis and Ferruginibacter alkalilentus.	Kang H, Kim H, Joung Y, Jang TY, Joh K	Int J Syst Evol Microbiol	10.1099/ijs.0.000311	2015	*
Phylogeny	Ferruginibacter profundus sp. nov., a novel member of the family Chitinophagaceae, isolated from freshwater sediment of a reservoir.	Jin L, Lee HG, La HJ, Ko SR, Ahn CY, Oh HM	Antonie Van Leeuwenhoek	10.1007/s10482-014-0202-8	2014	*
Phylogeny	Ferruginibacter yonginensis sp. nov., isolated from a mesotrophic artificial lake.	Lee BI, Kang H, Kim H, Joung Y, Joh K	Int J Syst Evol Microbiol	10.1099/ijs.0.057083-0	2013	*
Phylogeny	Ferruginibacter alkalilentus gen. nov., sp. nov. and Ferruginibacter lapsinanis sp. nov., novel members of the family 'Chitinophagaceae' in the phylum Bacteroidetes, isolated from freshwater sediment.	Lim JH, Baek SH, Lee ST	Int J Syst Evol Microbiol	10.1099/ijs.0.009480-0	2009	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29250

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25670 (see below)

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#91479

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID319129.1 )

#25670

IJSEM 2394 2009 ( DOI 10.1099/ijs.0.009480-0 , PubMed 19620358 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Ferruginibacter alkalilentus in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF