Marinobacterium sediminicola (CGMCC 1.7287, JCM 15524, CN 47)

Name: Marinobacterium sediminicola (CGMCC 1.7287, JCM 15524, CN 47)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 133471

Type strain

Culture col. no. CGMCC 1.7287 JCM 15524 CN 47

NCBI tax ID(s) 518898

Special Collections JCM Literature strains

Links

Marinobacterium sediminicola CGMCC 1.7287 is an aerobe, Gram-negative, motile prokaryote that was isolated from marine sediment.

Gram-negative motile rod-shaped aerobe genome sequence 16S sequence

Name and taxonomic classification

SI-ID 362541

LMG 25280,CGMCC 1.7287,JCM 15524

@ref 20215

Last LPSN update 2025-12-16 10:01:47

Domain Pseudomonadati

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Alteromonadales

Family Alteromonadaceae

Genus Marinobacterium

Species Marinobacterium sediminicola

Full scientific name Marinobacterium sediminicola Huo et al. 2009

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility	Confidence
29082	negative	1.5 µm	0.4 µm	rod-shaped
125439	negative					99.5

Pigmentation

29082

Productionno

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
29082	positive	growth	15-42
29082	positive	optimum	35	mesophilic
67770	positive	growth	30	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
29082	positive	optimum	7
29082	positive	growth	6-9.5	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
29082	aerobe
125439	obligate aerobe	93.3

Spore formation

@ref	Spore formation	Confidence
29082
125439		99.4

Halophily

@ref	Salt	Growth	Tested relation	Concentration
29082	NaCl	positive	optimum	2 %

Observation

@ref	Observation
29082	aggregates in clumps
67770	quinones: Q-8

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
29082	30089 ChEBI	acetate	+	carbon source
29082	16449 ChEBI	alanine	+	carbon source
29082	22653 ChEBI	asparagine	+	carbon source
29082	35391 ChEBI	aspartate	+	carbon source
29082	16947 ChEBI	citrate	+	carbon source
29082	16236 ChEBI	ethanol	+	carbon source
29082	24996 ChEBI	lactate	+	carbon source
29082	25115 ChEBI	malate	+	carbon source
29082	17272 ChEBI	propionate	+	carbon source
29082	15361 ChEBI	pyruvate	+	carbon source
29082	30031 ChEBI	succinate	+	carbon source
29082	53424 ChEBI	tween 20	+	carbon source

Enzymes

@ref	Value	Activity	Ec
29082	catalase	+	1.11.1.6
29082	cytochrome oxidase	+	1.9.3.1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
29082	marine sediment
67770	Marine sediment sample of Zhejiang	China	CHN	Asia

Taxonmaps

69479

Global distribution of 16S sequence EU573966 (>99% sequence identity) for Marinobacterium sediminicola from Microbeatlas

Aquatic Samples	30
Soil Samples	4
Animal Samples	2
Plant Samples	1
Total Samples	37

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
124043	IMG-taxon 2617270783 annotated assembly for Marinobacterium sediminicola CGMCC 1.7287	scaffold	GCA_900184155	518898.4	2617270783	518898	67.1
124043	ASM3952325v1 assembly for Marinobacterium sediminicola JCM 15524	scaffold	GCA_039523255			518898	57.09

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Marinobacterium sediminicola strain CN47 16S ribosomal RNA gene, partial sequence	EU573966	1464		518898

GC content

@ref	GC-content (mol%)	Method
29082	56.3
67770	56.3	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Marinobacterium sediminicola CGMCC 1.7287
IMG: 2617270783

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.40	no
125439	motility	BacteriaNetⓘ	yes	89.20	no
125439	gram_stain	BacteriaNetⓘ	negative	99.50	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	93.30	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Genomic insights into Marinobacterium sediminicola CGMCC 1.7287^T: A polyhydroxyalkanoate-producing bacterium isolated from marine sediment.	Wang MR, Zhang Y, Li ZJ.	Mar Genomics	10.1016/j.margen.2025.101180	2025
Phylogeny	Marinobacterium alkalitolerans sp. nov., with nitrate reductase and urease activity isolated from green algal mat collected from a solar saltern.	Pinnaka AK, Tanuku NRS, Gupta V, Vasudeva G, Pydi S, Kashyap N, Behera S, Ganta SK	Antonie Van Leeuwenhoek	10.1007/s10482-021-01582-y	2021
Phylogeny	Marinobacterium nitratireducens sp. nov. and Marinobacterium sediminicola sp. nov., isolated from marine sediment.	Huo YY, Xu XW, Cao Y, Wang CS, Zhu XF, Oren A, Wu M	Int J Syst Evol Microbiol	10.1099/ijs.0.005751-0	2009

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#29082	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25512 (see below)
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Marinobacterium sediminicola (CGMCC 1.7287, JCM 15524, CN 47)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_900184155

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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