Strain identifier
BacDive ID: 133471
Type strain: 
Species: Marinobacterium sediminicola
Strain history: X.-W. Xu CN47.
NCBI tax ID(s): 518898 (species)
version 8.1 (current version)
General
@ref: 29082
BacDive-ID: 133471
keywords: genome sequence, 16S sequence, Bacteria, aerobe, Gram-negative, motile, rod-shaped
description: Marinobacterium sediminicola CGMCC 1.7287 is an aerobe, Gram-negative, motile bacterium that was isolated from marine sediment.
NCBI tax id
- NCBI tax id: 518898
- Matching level: species
strain history
- @ref: 67770
- history: X.-W. Xu CN47.
doi: 10.13145/bacdive133471.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Alteromonadales
- family: Alteromonadaceae
- genus: Marinobacterium
- species: Marinobacterium sediminicola
- full scientific name: Marinobacterium sediminicola Huo et al. 2009
@ref: 29082
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Alteromonadales
family: Alteromonadaceae
genus: Marinobacterium
species: Marinobacterium sediminicola
type strain: yes
Morphology
cell morphology
- @ref: 29082
- gram stain: negative
- cell length: 1.5 µm
- cell width: 0.4 µm
- cell shape: rod-shaped
- motility: yes
pigmentation
- @ref: 29082
- production: no
Culture and growth conditions
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 29082 | positive | growth | 15-42 | |
| 29082 | positive | optimum | 35 | mesophilic |
| 67770 | positive | growth | 30 | mesophilic |
culture pH
| @ref | ability | type | pH | PH range |
|---|---|---|---|---|
| 29082 | positive | growth | 6-9.5 | alkaliphile |
| 29082 | positive | optimum | 7 |
Physiology and metabolism
oxygen tolerance
- @ref: 29082
- oxygen tolerance: aerobe
spore formation
- @ref: 29082
- spore formation: no
halophily
- @ref: 29082
- salt: NaCl
- growth: positive
- tested relation: optimum
- concentration: 2 %
observation
| @ref | observation |
|---|---|
| 29082 | aggregates in clumps |
| 67770 | quinones: Q-8 |
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 29082 | 30089 | acetate | + | carbon source |
| 29082 | 16449 | alanine | + | carbon source |
| 29082 | 22653 | asparagine | + | carbon source |
| 29082 | 35391 | aspartate | + | carbon source |
| 29082 | 16947 | citrate | + | carbon source |
| 29082 | 16236 | ethanol | + | carbon source |
| 29082 | 24996 | lactate | + | carbon source |
| 29082 | 25115 | malate | + | carbon source |
| 29082 | 17272 | propionate | + | carbon source |
| 29082 | 15361 | pyruvate | + | carbon source |
| 29082 | 30031 | succinate | + | carbon source |
| 29082 | 53424 | tween 20 | + | carbon source |
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 29082 | catalase | + | 1.11.1.6 |
| 29082 | cytochrome oxidase | + | 1.9.3.1 |
Isolation, sampling and environmental information
isolation
| @ref | sample type | country | origin.country | continent |
|---|---|---|---|---|
| 29082 | marine sediment | |||
| 67770 | Marine sediment sample of Zhejiang | China | CHN | Asia |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Marine |
| #Environmental | #Aquatic | #Sediment |
taxonmaps
- @ref: 69479
- File name: preview.99_129710.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_240;96_3310;97_4059;98_10496;99_129710&stattab=map
- Last taxonomy: Marinobacterium sediminicola
- 16S sequence: EU573966
- Sequence Identity:
- Total samples: 37
- soil counts: 4
- aquatic counts: 30
- animal counts: 2
- plant counts: 1
Sequence information
16S sequences
- @ref: 67770
- description: Marinobacterium sediminicola strain CN47 16S ribosomal RNA gene, partial sequence
- accession: EU573966
- length: 1464
- database: ena
- NCBI tax ID: 518898
Genome sequences
- @ref: 66792
- description: Marinobacterium sediminicola CGMCC 1.7287
- accession: 2617270783
- assembly level: draft
- database: img
- NCBI tax ID: 518898
GC content
| @ref | GC-content | method |
|---|---|---|
| 29082 | 56.3 | |
| 67770 | 56.3 | thermal denaturation, midpoint method (Tm) |
External links
@ref: 29082
culture collection no.: CGMCC 1.7287, JCM 15524, CN 47
straininfo link
- @ref: 91454
- straininfo: 362541
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 19406814 | Marinobacterium nitratireducens sp. nov. and Marinobacterium sediminicola sp. nov., isolated from marine sediment. | Huo YY, Xu XW, Cao Y, Wang CS, Zhu XF, Oren A, Wu M | Int J Syst Evol Microbiol | 10.1099/ijs.0.005751-0 | 2009 | Alteromonadaceae/*classification/genetics/isolation & purification/physiology, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Fatty Acids/analysis, Genes, rRNA, Genotype, Geologic Sediments/*microbiology, Molecular Sequence Data, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Species Specificity | Genetics |
| Phylogeny | 34059969 | Marinobacterium alkalitolerans sp. nov., with nitrate reductase and urease activity isolated from green algal mat collected from a solar saltern. | Pinnaka AK, Tanuku NRS, Gupta V, Vasudeva G, Pydi S, Kashyap N, Behera S, Ganta SK | Antonie Van Leeuwenhoek | 10.1007/s10482-021-01582-y | 2021 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, India, Nitrate Reductase, Oceanospirillaceae/*classification/isolation & purification, Phospholipids/analysis, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Ubiquinone, Urease | Enzymology |
Reference
| @id | authors | title | doi/url | ID_cross_reference | pubmed |
|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||
| 29082 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 25512 | 28776041 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | ||
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | ||
| 91454 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID362541.1 |