Lacibacter cauensis (CGMCC 1.7271, NBRC 104930, NJ-8)

Name: Lacibacter cauensis (CGMCC 1.7271, NBRC 104930, NJ-8)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 133442

Type strain

Strain Designation NJ-8

Culture col. no. CGMCC 1.7271 NBRC 104930 NJ-8

NCBI tax ID(s) 510947

Special Collections Literature strains

Links

Lacibacter cauensis NJ-8 is an aerobe, Gram-positive, motile bacterium that was isolated from freshwater sediment .

Gram-positive motile rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 132909

NBRC 104930

@ref 20215

Last LPSN update 2026-02-09 11:31:57

Domain Bacteria

Phylum Bacteroidota

Class Chitinophagia

Order Chitinophagales

Family Chitinophagaceae

Genus Lacibacter

Species Lacibacter cauensis

Full scientific name Lacibacter cauensis Qu et al. 2009

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility	Flagellum arrangement	Confidence
29001	positive	1.5 µm	0.5 µm	rod-shaped		gliding
125439	negative						98.8

Pigmentation

29001

Productionyes

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
29001	positive	growth	20-37
29001	positive	optimum	32.5

Culture pH

@ref	Ability	Type	PH
29001	positive	optimum	7
29001	positive	growth	5.5-8

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
29001	aerobe
125438	aerobe	90.407
125439	obligate aerobe	99.4

Spore formation

@ref	Spore formation	Confidence
125439		94.3

Halophily

@ref	Salt	Growth	Tested relation	Concentration
29001	NaCl	positive	growth	0-1 %

Observation

29001

Observationaggregates in clumps

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
29001	28757 ChEBI	fructose	+	carbon source
29001	28260 ChEBI	galactose	+	carbon source
29001	17234 ChEBI	glucose	+	carbon source
29001	17716 ChEBI	lactose	+	carbon source
29001	17306 ChEBI	maltose	+	carbon source
29001	29864 ChEBI	mannitol	+	carbon source
29001	37684 ChEBI	mannose	+	carbon source
29001	28053 ChEBI	melibiose	+	carbon source
29001	17268 ChEBI	myo-inositol	+	carbon source
29001	16634 ChEBI	raffinose	+	carbon source
29001	26546 ChEBI	rhamnose	+	carbon source
29001	17814 ChEBI	salicin	+	carbon source
29001	30911 ChEBI	sorbitol	+	carbon source
29001	17992 ChEBI	sucrose	+	carbon source
29001	27082 ChEBI	trehalose	+	carbon source

Metabolite production

@ref	Chebi-ID	Metabolite	Production
29001	16136 ChEBI	hydrogen sulfide

Enzymes

@ref	Value	Activity	Ec
29001	catalase	+	1.11.1.6
29001	cytochrome oxidase	+	1.9.3.1
29001	gelatinase	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Freshwater
#Environmental	#Aquatic	#Lake (large)
#Environmental	#Aquatic	#Pond (small)
#Environmental	#Aquatic	#River (Creek)

Isolation

29001

Sample typefreshwater sediment (river, lake, pond)

Taxonmaps

69479

Global distribution of 16S sequence EU521690 (>99% sequence identity) for Lacibacter cauensis from Microbeatlas

Aquatic Samples	100
Soil Samples	42
Animal Samples	35
Plant Samples	6
Total Samples	183

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM783005v1 assembly for Lacibacter cauensis CGMCC 1.7271	scaffold	GCA_007830055	510947.5	2596583623	510947	76.26

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
29001	Lacibacter cauensis strain NJ-8 16S ribosomal RNA gene, partial sequence	EU521690	1412		510947
124043	Lacibacter cauensis gene for 16S rRNA, partial sequence, strain: NBRC 104930.	AB682227	1456		510947

GC content

29001

GC-content (mol%)46.6

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Lacibacter cauensis CGMCC 1.7271
NCBI: GCA_007830055

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	94.30	no
125439	motility	BacteriaNetⓘ	no	72.20	no
125439	gram_stain	BacteriaNetⓘ	negative	98.80	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.40	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Lacibacter cauensis CGMCC 1.7271
NCBI: GCA_007830055.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	76.11	yes
125438	anaerobic	anaerobicⓘ	no	97.60	yes
125438	aerobic	aerobicⓘ	yes	90.41	yes
125438	spore-forming	spore-formingⓘ	no	87.64	no
125438	thermophilic	thermophileⓘ	no	99.31	yes
125438	flagellated	motile2+ⓘ	no	88.51	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Lacibacter luteus sp. nov., isolated from a freshwater river.	Sheu SY, Chen TY, Kwon SW, Chen WM	Int J Syst Evol Microbiol	10.1099/ijsem.0.003926	2020
Phylogeny	Flavipsychrobacter stenotrophus gen. nov., sp. nov., a novel member of the phylum Bacteroidetes isolated from a glacier.	Liu Q, Liu HC, Zhou YG, Xin YH	Int J Syst Evol Microbiol	10.1099/ijsem.0.002996	2018
Phylogeny	Rurimicrobium arvi gen. nov., sp. nov., a member of the family Chitinophagaceae isolated from farmland soil.	Dahal RH, Chaudhary DK, Kim J	Int J Syst Evol Microbiol	10.1099/ijsem.0.002452	2017
Phylogeny	Lacibacter nakdongensis sp. nov., isolated from river sediment.	Han JH, Baek K, Lee MH	Int J Syst Evol Microbiol	10.1099/ijsem.0.001631	2017
Phylogeny	Filimonas aurantiibacter sp. nov., an orange-pigmented bacterium isolated from lake water and emended description of the genus Filimonas.	Albert RA, Waas NE, Pavlons SC, Pearson JL, Roecker J, Tewalt N, Cleeve N, Rossello-Mora R, Busse HJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.001305	2016
Phylogeny	Lacibacter daechungensis sp. nov., isolated from deep freshwater of a reservoir.	Jin L, Shin SY, Lee HG, Ahn CY, Oh HM	Int J Syst Evol Microbiol	10.1099/ijs.0.053702-0	2013
Phylogeny	Taibaiella smilacinae gen. nov., sp. nov., an endophytic member of the family Chitinophagaceae isolated from the stem of Smilacina japonica, and emended description of Flavihumibacter petaseus.	Zhang L, Wang Y, Wei L, Wang Y, Shen X, Li S	Int J Syst Evol Microbiol	10.1099/ijs.0.051607-0	2013
Phylogeny	Lacibacter cauensis gen. nov., sp. nov., a novel member of the phylum Bacteroidetes isolated from sediment of a eutrophic lake.	Qu JH, Yuan HL, Yang JS, Li HF, Chen N	Int J Syst Evol Microbiol	10.1099/ijs.0.003475-0	2009

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#25434	IJSEM 1153 2009 ( DOI 10.1099/ijs.0.003475-0 , PubMed 19406810 )
#29001	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25434
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Lacibacter cauensis (CGMCC 1.7271, NBRC 104930, NJ-8)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Metabolite production

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_007830055

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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