Name: Lacibacter cauensis NJ-8
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133442

Type strain:

Species: Lacibacter cauensis

Strain Designation: NJ-8

Culture col. no.: CGMCC 1.7271, NBRC 104930

NCBI tax ID(s): 510947 (species)

Section

Lacibacter cauensis NJ-8 is an aerobe, Gram-positive, motile bacterium that was isolated from freshwater sediment .

Gram-positive
motile
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Chitinophagia*
	Order	*Chitinophagales*
	Family	*Chitinophagaceae*
	Genus	*Lacibacter*
	Species	**Lacibacter cauensis**
	Full Scientific Name (LPSN)	Lacibacter cauensis Qu et al. 2009

Information on morphological and physiological properties Morphology

[Ref.: #29001]	Gram stain	positive
[Ref.: #69480]	Gram stain	negative Confidence in %99.996

[Ref.: #29001]	Cell length	1.5 µm

[Ref.: #29001]	Cell width	0.5 µm

[Ref.: #29001]	Cell shape	rod-shaped

[Ref.: #29001]	Motility	yes

[Ref.: #29001]	Flagellum arrangement	gliding

[Ref.: #29001]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #29001]			growth	20-37 °C
[Ref.: #29001]			optimum	32.5 °C

[Ref.: #29001]

Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #29001]			optimum	7
[Ref.: #29001]			growth	5.5-8

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29001]

Oxygen tolerance

aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.989

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29001]		NaCl		growth	0-1	%

[Ref.: #29001]

Observation

aggregates in clumps

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29001]	fructose ChEBI	+	carbon source
[Ref.: #29001]	galactose ChEBI	+	carbon source
[Ref.: #29001]	glucose ChEBI	+	carbon source
[Ref.: #29001]	lactose ChEBI	+	carbon source
[Ref.: #29001]	maltose ChEBI	+	carbon source
[Ref.: #29001]	mannitol ChEBI	+	carbon source
[Ref.: #29001]	mannose ChEBI	+	carbon source
[Ref.: #29001]	melibiose ChEBI	+	carbon source
[Ref.: #29001]	myo-inositol ChEBI	+	carbon source
[Ref.: #29001]	raffinose ChEBI	+	carbon source
[Ref.: #29001]	rhamnose ChEBI	+	carbon source
[Ref.: #29001]	salicin ChEBI	+	carbon source
[Ref.: #29001]	sorbitol ChEBI	+	carbon source
[Ref.: #29001]	sucrose ChEBI	+	carbon source
[Ref.: #29001]	trehalose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #29001]		hydrogen sulfide ChEBI	yes

	Enzyme	Enzyme activity	EC number
[Ref.: #29001]	catalase	+	1.11.1.6
[Ref.: #29001]	cytochrome oxidase	+	1.9.3.1
[Ref.: #29001]	gelatinase	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #29001]	Sample type/isolated from	freshwater sediment (river, lake, pond)
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Freshwater
#Environmental	#Aquatic	#Lake (large)
#Environmental	#Aquatic	#Pond (small)
#Environmental	#Aquatic	#River (Creek)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EU521690 (>99% sequence identity) for Lacibacter cauensis from Microbeatlas

Aquatic Samples	100
Soil Samples	42
Animal Samples	35
Plant Samples	6
Total Samples	183

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #29001]	Lacibacter cauensis strain NJ-8 16S ribosomal RNA gene, partial sequence	EU521690	1412	GenBank	510947 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Lacibacter cauensis CGMCC 1.7271	GCA_007830055	scaffold	GenBank	510947 tax ID	*
[Ref.: #66792]	Lacibacter cauensis strain CGMCC 1.7271	510947.5	wgs	PATRIC	510947 tax ID	*
[Ref.: #66792]	Lacibacter cauensis CGMCC 1.7271	2596583623	draft	JGI IMG/M	510947 tax ID	*

[Ref.: #29001]

GC-content

46.6 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Lacibacter cauensis CGMCC 1.7271 NCBI: GCA_007830055.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Lacibacter cauensis CGMCC 1.7271 NCBI: GCA_007830055.1
[Ref.: #69480]	flagellated	no	98.196	no
[Ref.: #69480]	gram-positive	no	93.961	yes
[Ref.: #69480]	anaerobic	no	99.184	yes
[Ref.: #69480]	aerobic	yes	92.813	yes
[Ref.: #69480]	halophile	no	98.293	yes
[Ref.: #69480]	spore-forming	no	93.897	no
[Ref.: #69480]	glucose-util	yes	88.789	yes
[Ref.: #69480]	thermophile	no	94.988	yes
[Ref.: #69480]	motile	no	94.339	no
[Ref.: #69480]	glucose-ferment	no	90.104	no

Availability in culture collections External links

[Ref.: #29001]

Culture collection no.

CGMCC 1.7271, NBRC 104930

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Lacibacter luteus sp. nov., isolated from a freshwater river.	Sheu SY, Chen TY, Kwon SW, Chen WM	Int J Syst Evol Microbiol	10.1099/ijsem.0.003926	2020	*
Phylogeny	Flavipsychrobacter stenotrophus gen. nov., sp. nov., a novel member of the phylum Bacteroidetes isolated from a glacier.	Liu Q, Liu HC, Zhou YG, Xin YH	Int J Syst Evol Microbiol	10.1099/ijsem.0.002996	2018	*
Phylogeny	Rurimicrobium arvi gen. nov., sp. nov., a member of the family Chitinophagaceae isolated from farmland soil.	Dahal RH, Chaudhary DK, Kim J	Int J Syst Evol Microbiol	10.1099/ijsem.0.002452	2017	*
Phylogeny	Lacibacter nakdongensis sp. nov., isolated from river sediment.	Han JH, Baek K, Lee MH	Int J Syst Evol Microbiol	10.1099/ijsem.0.001631	2017	*
Phylogeny	Filimonas aurantiibacter sp. nov., an orange-pigmented bacterium isolated from lake water and emended description of the genus Filimonas.	Albert RA, Waas NE, Pavlons SC, Pearson JL, Roecker J, Tewalt N, Cleeve N, Rossello-Mora R, Busse HJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.001305	2016	*
Phylogeny	Lacibacter daechungensis sp. nov., isolated from deep freshwater of a reservoir.	Jin L, Shin SY, Lee HG, Ahn CY, Oh HM	Int J Syst Evol Microbiol	10.1099/ijs.0.053702-0	2013	*
Phylogeny	Taibaiella smilacinae gen. nov., sp. nov., an endophytic member of the family Chitinophagaceae isolated from the stem of Smilacina japonica, and emended description of Flavihumibacter petaseus.	Zhang L, Wang Y, Wei L, Wang Y, Shen X, Li S	Int J Syst Evol Microbiol	10.1099/ijs.0.051607-0	2013	*
Phylogeny	Lacibacter cauensis gen. nov., sp. nov., a novel member of the phylum Bacteroidetes isolated from sediment of a eutrophic lake.	Qu JH, Yuan HL, Yang JS, Li HF, Chen N	Int J Syst Evol Microbiol	10.1099/ijs.0.003475-0	2009	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29001

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25434 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#25434

IJSEM 1153 2009 ( DOI 10.1099/ijs.0.003475-0 , PubMed 19406810 )

* These data were automatically processed and therefore are not curated

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Lacibacter cauensis CGMCC 1.7271

Lacibacter cauensis CGMCC 1.7271

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