Name: Mucilaginibacter daejeonensis KCTC 12639
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133441

Type strain:

Species: Mucilaginibacter daejeonensis

Culture col. no.: KCTC 12639, LMG 23488, Jip 10

Strain history: <- ST Lee, KAIST

NCBI tax ID(s): 398049 (species)

SI-ID 290311

LMG 23488, KCTC 12639

Section

Mucilaginibacter daejeonensis KCTC 12639 is a facultative aerobe, Gram-negative, rod-shaped bacterium that was isolated from plant associated.

Gram-negative
rod-shaped
facultative aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Sphingobacteriia*
	Order	*Sphingobacteriales*
	Family	*Sphingobacteriaceae*
	Genus	*Mucilaginibacter*
	Species	**Mucilaginibacter daejeonensis**
	Full Scientific Name (LPSN)	Mucilaginibacter daejeonensis An et al. 2009

Information on morphological and physiological properties Morphology

[Ref.: #28996]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative

[Ref.: #28996]	Cell length	1.45 µm

[Ref.: #28996]	Cell width	0.7 µm

[Ref.: #28996]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #28996]	Motility	no
[Ref.: #67771]	Motility	no

[Ref.: #28996]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #28996]	growth	15-37 °C
[Ref.: #28996]	optimum	30 °C
[Ref.: #67771]	growth	30 °C

[Ref.: #28996]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #28996]			optimum	7
[Ref.: #28996]			growth	4.5-8.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #28996]	Oxygen tolerance	facultative aerobe
[Ref.: #67771]	Oxygen tolerance	facultative anaerobe

[Ref.: #28996]	Ability of spore formation	no
[Ref.: #67771]	Ability of spore formation	no

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #28996]		NaCl		growth	<3	%

[Ref.: #28996]	Observation	aggregates in clumps
[Ref.: #67771]	Observation	quinones: MK-7

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #28996]	arabinose ChEBI	+	carbon source
[Ref.: #28996]	cellobiose ChEBI	+	carbon source
[Ref.: #28996]	fructose ChEBI	+	carbon source
[Ref.: #28996]	galactose ChEBI	+	carbon source
[Ref.: #28996]	glucose ChEBI	+	carbon source
[Ref.: #28996]	lactose ChEBI	+	carbon source
[Ref.: #28996]	maltose ChEBI	+	carbon source
[Ref.: #28996]	mannose ChEBI	+	carbon source
[Ref.: #28996]	melibiose ChEBI	+	carbon source
[Ref.: #28996]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #28996]	rhamnose ChEBI	+	carbon source
[Ref.: #28996]	sucrose ChEBI	+	carbon source
[Ref.: #28996]	trehalose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #28996]	acid phosphatase	+	3.1.3.2
[Ref.: #28996]	alkaline phosphatase	+	3.1.3.1
[Ref.: #28996]	alpha-galactosidase	+	3.2.1.22
[Ref.: #28996]	catalase	+	1.11.1.6
[Ref.: #28996]	cytochrome oxidase	+	1.9.3.1
[Ref.: #28996]	urease	+	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #28996]	Sample type/isolated from	plant associated

[Ref.: #67771]	Sample type/isolated from	From dried rice straw in a field
[Ref.: #67771]	Geographic location (country and/or sea, region)	Daejeon
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host

#Plants

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB267717 (>99% sequence identity) for Mucilaginibacter daejeonensis subclade from Microbeatlas

Aquatic Samples	317
Soil Samples	794
Animal Samples	345
Plant Samples	754
Total Samples	2210

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #28996]	Mucilaginibacter daejeonensis gene for 16S rRNA, partial sequence, strain: Jip 10	AB267717	1469	GenBank	398049 tax ID

[Ref.: #28996]

GC-content

40.4 mol%

Availability in culture collections External links

[Ref.: #28996]

Culture collection no.

KCTC 12639, LMG 23488, Jip 10

[Ref.: #91444]

SI-ID 290311

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Mucilaginibacter daejeonensis sp. nov., isolated from dried rice straw.	An DS, Yin CR, Lee ST, Cho CH	Int J Syst Evol Microbiol	10.1099/ijs.0.003384-0	2009	*
Phylogeny	Mucilaginibacter aquatilis sp. nov., Mucilaginibacter arboris sp. nov., and Mucilaginibacter ginkgonis sp. nov., novel bacteria isolated from freshwater and tree bark.	Kang H, Kim H, Bae S, Joh K	Int J Syst Evol Microbiol	10.1099/ijsem.0.004755	2021	*
Phylogeny	Mucilaginibacter terrae sp. nov., isolated from Antarctic soil.	Sedlacek I, Pantucek R, Kralova S, Maslanova I, Holochova P, Stankova E, Sobotka R, Bartak M, Busse HJ, Svec P	Int J Syst Evol Microbiol	10.1099/ijsem.0.002240	2017	*
Phylogeny	Ferruginibacter albus sp. nov., isolated from a mountain soil, and Mucilaginibacter robiniae sp. nov., isolated from a black locust flower, Robinia pseudoacacia.	Won M, Weon HY, Heo J, Lee D, Han BH, Hong SB, Kwon SW	Int J Syst Evol Microbiol	10.1099/ijsem.0.005556	2022	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#28996

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25429 (see below)

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#91444

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID290311.1 )

#25429

IJSEM 1122 2009 ( DOI 10.1099/ijs.0.003384-0 , PubMed 19406804 )

* These data were automatically processed and therefore are not curated

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