Name: Lewinella antarctica KCCM 42688
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 133425

Type strain:

Species: Lewinella antarctica

Culture col. no.: KCCM 42688, NBRC 103142, IMCC 3223, DSM 105096

Strain history: <- NBRC <- <-T.-H. Choi, Department of Oceanography, Inha University, Incheon, Republic of Korea

NCBI tax ID(s): 442734 (species)

SI-ID 401299

DSM 105096

Special Collections

Other strains from Lewinella antarctica

Section

Lewinella antarctica KCCM 42688 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from seawater.

Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Saprospiria*
	Order	*Saprospirales*
	Family	*Lewinellaceae*
	Genus	*Lewinella*
	Species	**Lewinella antarctica**
	Full Scientific Name (LPSN)	Lewinella antarctica Oh et al. 2009

Synonym

Neolewinella antarctica

Information on morphological and physiological properties Morphology

[Ref.: #28897]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %97.818

[Ref.: #28897]	Cell length	11.8 µm

[Ref.: #28897]	Cell width	1.15 µm

[Ref.: #28897]	Cell shape	rod-shaped

[Ref.: #28897]	Motility	no

[Ref.: #28897]

Pigment production

yes

Multimedia content

[Ref.: #42633]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #42633]

Culture medium

MARINE BROTH (ROTH CP73) (DSMZ Medium 514f)

[Ref.: #42633]

Culture medium growth

[Ref.: #42633]

Culture medium link

Medium recipe at MediaDive

[Ref.: #42633]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #28897]	growth	03-25 °C
[Ref.: #28897]	optimum	20 °C
[Ref.: #42633]	growth	20 °C

	pH	Kind of pH		pH
[Ref.: #28897]			optimum	6
[Ref.: #28897]			growth	5.0-10.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #28897]

Oxygen tolerance

aerobe

[Ref.: #69481]

Ability of spore formation

no Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #28897]		NaCl		optimum	3	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #28897]	2-oxopentanoate ChEBI	+	carbon source
[Ref.: #28897]	acetate ChEBI	+	carbon source
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #28897]	alanine ChEBI	+	carbon source
[Ref.: #28897]	alpha-cyclodextrin ChEBI	+	carbon source
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #28897]	aspartate ChEBI	+	carbon source
[Ref.: #28897]	cellobiose ChEBI	+	carbon source
[Ref.: #68369]	D-glucose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	-	assimilation	* from API 20NE
[Ref.: #28897]	DL-carnitine ChEBI	+	carbon source
[Ref.: #28897]	esculin ChEBI	+	hydrolysis
[Ref.: #68369]	esculin ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #28897]	galactose ChEBI	+	carbon source
[Ref.: #28897]	galacturonate ChEBI	+	carbon source
[Ref.: #28897]	gamma-aminobutyric acid ChEBI	+	carbon source
[Ref.: #68369]	gelatin ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #28897]	gluconate ChEBI	+	carbon source
[Ref.: #68369]	gluconate ChEBI	-	assimilation	* from API 20NE
[Ref.: #28897]	glucose ChEBI	+	carbon source
[Ref.: #28897]	glutamate ChEBI	+	carbon source
[Ref.: #28897]	glycogen ChEBI	+	carbon source
[Ref.: #28897]	L-alaninamide ChEBI	+	carbon source
[Ref.: #68369]	L-arabinose ChEBI	-	assimilation	* from API 20NE
[Ref.: #28897]	lactose ChEBI	+	carbon source
[Ref.: #68369]	malate ChEBI	-	assimilation	* from API 20NE
[Ref.: #28897]	maltose ChEBI	+	carbon source
[Ref.: #68369]	maltose ChEBI	-	assimilation	* from API 20NE
[Ref.: #28897]	mannitol ChEBI	+	carbon source
[Ref.: #28897]	melibiose ChEBI	+	carbon source
[Ref.: #28897]	methyl pyruvate ChEBI	+	carbon source
[Ref.: #68369]	N-acetylglucosamine ChEBI	-	assimilation	* from API 20NE
[Ref.: #28897]	nitrate ChEBI	+	reduction
[Ref.: #68369]	nitrate ChEBI	-	reduction	* from API 20NE
[Ref.: #28897]	phenylalanine ChEBI	+	carbon source
[Ref.: #28897]	rhamnose ChEBI	+	carbon source
[Ref.: #28897]	serine ChEBI	+	carbon source
[Ref.: #28897]	sorbitol ChEBI	+	carbon source
[Ref.: #28897]	succinate ChEBI	+	carbon source
[Ref.: #28897]	sucrose ChEBI	+	carbon source
[Ref.: #28897]	thymidine ChEBI	+	carbon source
[Ref.: #28897]	trehalose ChEBI	+	carbon source
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #28897]	acid phosphatase	+	3.1.3.2
[Ref.: #28897]	alkaline phosphatase	+	3.1.3.1
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #68369]	beta-glucosidase	+	3.2.1.21	* from API 20NE
[Ref.: #68369]	cytochrome oxidase	+	1.9.3.1	* from API 20NE
[Ref.: #28897]	gelatinase	+
[Ref.: #68369]	gelatinase	+		* from API 20NE
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #42633]	24612	-	-	-	-	-	+	+	+	-	-	-	-	-	-	-	-	-	-	-	-	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #28897]	Sample type/isolated from	seawater

[Ref.: #42633]	Sample type/isolated from	seawater
[Ref.: #42633]	Geographic location (country and/or sea, region)	Maxwell Bay, King George Island
[Ref.: #42633]	Country	Antarctica
[Ref.: #42633]	Country ISO 3 Code	ATA
[Ref.: #42633]	Continent	Australia and Oceania
[Ref.: #42633]	Geographic location	-62.2333°/-58.7833°
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Marine

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EF554367 (>99% sequence identity) for Lewinella antarctica subclade from Microbeatlas

Aquatic Samples	204
Soil Samples	2
Animal Samples	5
Plant Samples
Total Samples	211

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #42633]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #28897]	Lewinella antarctica strain IMCC3223 16S ribosomal RNA gene, partial sequence	EF554367	1452	GenBank ENA	442734 tax ID
[Ref.: #124043]	Lewinella antarctica gene for 16S rRNA, partial sequence, strain: NBRC 103142.	AB681951	1448	GenBank ENA	442734 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Neolewinella antarctica DSM 105096	GCA_011927835	scaffold	GenBank ENA	442734 tax ID	*
[Ref.: #66792]	Lewinella antarctica strain DSM 105096	442734.4	wgs	PATRIC	442734 tax ID	*
[Ref.: #66792]	Lewinella antarctica DSM 105096	2830033918	draft	JGI IMG/M	442734 tax ID	*

[Ref.: #28897]

GC-content

50.3 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Lewinella antarctica DSM 105096 NCBI: GCA_011927835.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Lewinella antarctica DSM 105096 NCBI: GCA_011927835.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	97.818	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	97.824	yes
[Ref.: #69480]	aerobic	aerobicⓘ	yes	87.555	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	87.611	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	94.57	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	84.75	no

Availability in culture collections External links

[Ref.: #42633]

Culture collection no.

KCCM 42688, NBRC 103142, IMCC 3223, DSM 105096

[Ref.: #91430]

SI-ID 401299

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Lewinella maritima sp. nov., and Lewinella lacunae sp. nov., novel bacteria from marine environments.	Kang H, Kim H, Joung Y, Joh K	Int J Syst Evol Microbiol	10.1099/ijsem.0.002176	2017	*
Phylogeny	Lewinella antarctica sp. nov., a marine bacterium isolated from Antarctic seawater.	Oh HM, Lee K, Cho JC	Int J Syst Evol Microbiol	10.1099/ijs.0.000794-0	2009	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#28897

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25337 (see below)

#42633

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 105096

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68369

Automatically annotated from API 20NE .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#91430

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID401299.1 )

#124043

Dr. Isabel Schober, Dr. Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

#25337

IJSEM 65 2009 ( DOI 10.1099/ijs.0.000794-0 , PubMed 19126725 )

* These data were automatically processed and therefore are not curated

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Lewinella antarctica DSM 105096

Lewinella antarctica DSM 105096

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