Name: Lewinella antarctica KCCM 42688
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 133425

Type strain:

Species: Lewinella antarctica

Culture col. no.: KCCM 42688, NBRC 103142, IMCC 3223, DSM 105096

Strain history: <- NBRC <- <-T.-H. Choi, Department of Oceanography, Inha University, Incheon, Republic of Korea

NCBI tax ID(s): 442734 (species)

SI-ID 401299

DSM 105096

Special Collections

Other strains from Lewinella antarctica

Section

When using BacDive for research please cite our paper

Lewinella antarctica KCCM 42688 is an aerobe, psychrophilic, Gram-negative bacterium that was isolated from seawater.

Gram-negative
rod-shaped
aerobe
psychrophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Bacteroidota*
	Class	*Saprospiria*
	Order	*Saprospirales*
	Family	*Lewinellaceae*
	Genus	*Lewinella*
	Species	**Lewinella antarctica**
	Full Scientific Name (LPSN)	Lewinella antarctica Oh et al. 2009

Synonym

Neolewinella antarctica

Information on morphological and physiological properties Morphology

[Ref.: #28897]	Gram stain	negative
[Ref.: #125438]	Gram stain	negative Confidence in %97.818

[Ref.: #28897]	Cell length	11.8 µm

[Ref.: #28897]	Cell width	1.15 µm

[Ref.: #28897]	Cell shape	rod-shaped

[Ref.: #28897]	Motility	no

[Ref.: #28897]

Pigment production

yes

Multimedia content

[Ref.: #42633]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #42633]

Culture medium

MARINE BROTH (ROTH CP73) (DSMZ Medium 514f)

[Ref.: #42633]

Culture medium growth

[Ref.: #42633]

Culture medium link

Medium recipe at MediaDive

[Ref.: #42633]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #28897]	growth	03-25 °C
[Ref.: #28897]	optimum	20 °C
[Ref.: #42633]	growth	20 °C

	pH	Kind of pH		pH
[Ref.: #28897]			optimum	6
[Ref.: #28897]			growth	5.0-10.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #28897]

Oxygen tolerance

aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #28897]		NaCl		optimum	3	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #28897]	2-oxopentanoate ChEBI	+	carbon source
[Ref.: #28897]	acetate ChEBI	+	carbon source
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #28897]	alanine ChEBI	+	carbon source
[Ref.: #28897]	alpha-cyclodextrin ChEBI	+	carbon source
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #28897]	aspartate ChEBI	+	carbon source
[Ref.: #28897]	cellobiose ChEBI	+	carbon source
[Ref.: #68369]	D-glucose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	-	assimilation	* from API 20NE
[Ref.: #28897]	DL-carnitine ChEBI	+	carbon source
[Ref.: #28897]	esculin ChEBI	+	hydrolysis
[Ref.: #68369]	esculin ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #28897]	galactose ChEBI	+	carbon source
[Ref.: #28897]	galacturonate ChEBI	+	carbon source
[Ref.: #28897]	gamma-aminobutyric acid ChEBI	+	carbon source
[Ref.: #68369]	gelatin ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #28897]	gluconate ChEBI	+	carbon source
[Ref.: #68369]	gluconate ChEBI	-	assimilation	* from API 20NE
[Ref.: #28897]	glucose ChEBI	+	carbon source
[Ref.: #28897]	glutamate ChEBI	+	carbon source
[Ref.: #28897]	glycogen ChEBI	+	carbon source
[Ref.: #28897]	L-alaninamide ChEBI	+	carbon source
[Ref.: #68369]	L-arabinose ChEBI	-	assimilation	* from API 20NE
[Ref.: #28897]	lactose ChEBI	+	carbon source
[Ref.: #68369]	malate ChEBI	-	assimilation	* from API 20NE
[Ref.: #28897]	maltose ChEBI	+	carbon source
[Ref.: #68369]	maltose ChEBI	-	assimilation	* from API 20NE
[Ref.: #28897]	mannitol ChEBI	+	carbon source
[Ref.: #28897]	melibiose ChEBI	+	carbon source
[Ref.: #28897]	methyl pyruvate ChEBI	+	carbon source
[Ref.: #68369]	N-acetylglucosamine ChEBI	-	assimilation	* from API 20NE
[Ref.: #28897]	nitrate ChEBI	+	reduction
[Ref.: #68369]	nitrate ChEBI	-	reduction	* from API 20NE
[Ref.: #28897]	phenylalanine ChEBI	+	carbon source
[Ref.: #28897]	rhamnose ChEBI	+	carbon source
[Ref.: #28897]	serine ChEBI	+	carbon source
[Ref.: #28897]	sorbitol ChEBI	+	carbon source
[Ref.: #28897]	succinate ChEBI	+	carbon source
[Ref.: #28897]	sucrose ChEBI	+	carbon source
[Ref.: #28897]	thymidine ChEBI	+	carbon source
[Ref.: #28897]	trehalose ChEBI	+	carbon source
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #28897]	acid phosphatase	+	3.1.3.2
[Ref.: #28897]	alkaline phosphatase	+	3.1.3.1
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #68369]	beta-glucosidase	+	3.2.1.21	* from API 20NE
[Ref.: #68369]	cytochrome oxidase	+	1.9.3.1	* from API 20NE
[Ref.: #28897]	gelatinase	+
[Ref.: #68369]	gelatinase	+		* from API 20NE
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #42633]	27298	-	-	-	-	-	+	+	+	-	-	-	-	-	-	-	-	-	-	-	-	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #28897]	Sample type/isolated from	seawater

[Ref.: #42633]	Sample type/isolated from	seawater
[Ref.: #42633]	Geographic location (country and/or sea, region)	Maxwell Bay, King George Island
[Ref.: #42633]	Country	Antarctica
[Ref.: #42633]	Country ISO 3 Code	ATA
[Ref.: #42633]	Continent	Australia and Oceania
[Ref.: #42633]	Geographic location	-62.2333°/-58.7833°
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Marine

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EF554367 (>99% sequence identity) for Lewinella antarctica subclade from Microbeatlas

Aquatic Samples	204
Soil Samples	2
Animal Samples	5
Plant Samples
Total Samples	211

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #42633]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #28897]	Lewinella antarctica strain IMCC3223 16S ribosomal RNA gene, partial sequence	EF554367	1452	GenBank ENA	442734 tax ID
[Ref.: #124043]	Lewinella antarctica gene for 16S rRNA, partial sequence, strain: NBRC 103142.	AB681951	1448	GenBank ENA	442734 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Neolewinella antarctica DSM 105096	GCA_011927835	scaffold	GenBank ENA	442734 tax ID	*
[Ref.: #66792]	Lewinella antarctica strain DSM 105096	442734.4	wgs	PATRIC	442734 tax ID	*
[Ref.: #66792]	Lewinella antarctica DSM 105096	2830033918	draft	JGI IMG/M	442734 tax ID	*

[Ref.: #28897]

GC-content

50.3 mol%

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Lewinella antarctica DSM 105096 NCBI: GCA_011927835.1
[Ref.: #125438]	gram-positive	gram-positiveⓘ	no	97.818	no
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	97.824	yes
[Ref.: #125438]	aerobic	aerobicⓘ	yes	87.555	yes
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	87.611	no
[Ref.: #125438]	thermophile	thermophilicⓘ	no	94.57	yes
[Ref.: #125438]	motile2+	flagellatedⓘ	no	84.75	no

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Neolewinella antarctica DSM 105096 NCBI: GCA_011927835
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	no	85.3
[Ref.: #125439]	BacteriaNet	motilityⓘ	no	84.3
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	negative	63.2
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	obligate aerobe	89.2

Availability in culture collections External links

[Ref.: #42633]

Culture collection no.

KCCM 42688, NBRC 103142, IMCC 3223, DSM 105096

[Ref.: #91430]

SI-ID 401299

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Lewinella maritima sp. nov., and Lewinella lacunae sp. nov., novel bacteria from marine environments.	Kang H, Kim H, Joung Y, Joh K	Int J Syst Evol Microbiol	10.1099/ijsem.0.002176	2017	*
Phylogeny	Lewinella antarctica sp. nov., a marine bacterium isolated from Antarctic seawater.	Oh HM, Lee K, Cho JC	Int J Syst Evol Microbiol	10.1099/ijs.0.000794-0	2009	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#28897

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25337 (see below)

#42633

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 105096

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68369

Automatically annotated from API 20NE .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#91430

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID401299.1 )

#124043

Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

#25337

IJSEM 65 2009 ( DOI 10.1099/ijs.0.000794-0 , PubMed 19126725 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Lewinella antarctica in external resources:
SILVA
BRENDA
PANGAEA
GBIF

Lewinella antarctica DSM 105096

Neolewinella antarctica DSM 105096

Change proposal

Change proposal