Name: Saccharicrinis aurantiacus HQYD1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133336

Type strain:

Species: Saccharicrinis aurantiacus

Strain Designation: HQYD1

Culture col. no.: MCCC 1K02304, KCTC 42583

Strain history: <- Zong-Jun Du, Shandong Univ..

NCBI tax ID(s): 1849719 (species)

Section

Saccharicrinis aurantiacus HQYD1 is a facultative anaerobe, Gram-negative, motile bacterium that forms circular colonies and was isolated from sea squirt .

colony-forming
Gram-negative
motile
rod-shaped
facultative anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Bacteroidia*
	Order	*Bacteroidales*
	Family	*Marinilabiliaceae*
	Genus	*Saccharicrinis*
	Species	**Saccharicrinis aurantiacus**
	Full Scientific Name (LPSN)	Saccharicrinis aurantiacus (Lu et al. 2017) García-López et al. 2020

Synonym

Labilibacter aurantiacus

Information on morphological and physiological properties Morphology

[Ref.: #25189]	Gram stain	negative
[Ref.: #25189]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative

[Ref.: #25189]	Cell length	1.5-20.0 µm
[Ref.: #25189]	Cell length	2.0-17.0 µm

[Ref.: #25189]	Cell width	0.3-0.5 µm
[Ref.: #25189]	Cell width	0.3-0.5 µm

[Ref.: #25189]	Cell shape	rod-shaped
[Ref.: #25189]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #25189]	Motility	yes
[Ref.: #25189]	Motility	yes

[Ref.: #67771]	Flagellum arrangement	gliding

[Ref.: #25189]	Colony size	0.5 mm
[Ref.: #25189]	Colony color	orange
[Ref.: #25189]	Colony shape	circular
[Ref.: #25189]	Incubation period	3 days
[Ref.: #25189]	Cultivation medium used	marine agar (MA)

[Ref.: #25189]	Colony color	yellow

Information on culture and growth conditions Culture and growth conditions

[Ref.: #25189]

Culture medium

marine agar (MA)

[Ref.: #25189]

Culture medium growth

	Kind of temperature		Temperature
[Ref.: #25189]		growth	4.0-37.0 °C
[Ref.: #25189]		optimum	28 °C
[Ref.: #25189]		growth	10 °C
[Ref.: #25189]	no	growth	40 °C
[Ref.: #25189]		growth	4.0-33.0 °C
[Ref.: #25189]		optimum	28.0-30.0 °C
[Ref.: #67771]		growth	28-30 °C

[Ref.: #25189]	Temperature range	mesophilic
[Ref.: #25189]	Temperature range	psychrophilic
[Ref.: #25189]	Temperature range	thermophilic
[Ref.: #25189]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #25189]			optimum	7.0-7.5
[Ref.: #25189]			growth	6.0-8.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #25189]	Oxygen tolerance	facultative anaerobe
[Ref.: #67771]	Oxygen tolerance	facultative anaerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #25189]		NaCl		growth	1.0-5.0	%(w/v)
[Ref.: #25189]		NaCl		optimum	2.0-3.0	%(w/v)

[Ref.: #67771]

Observation

quinones: MK-7

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #25189]	2-oxoglutarate ChEBI	+	oxidation
[Ref.: #25189]	5-dehydro-D-gluconate ChEBI	+	builds acid from
[Ref.: #25189]	agar ChEBI	+	hydrolysis
[Ref.: #25189]	alginate ChEBI	+	hydrolysis
[Ref.: #25189]	alpha-lactose ChEBI	+	oxidation
[Ref.: #25189]	amygdalin ChEBI	+	builds acid from
[Ref.: #25189]	cellobiose ChEBI	+	builds acid from
[Ref.: #25189]	cellobiose ChEBI	+	oxidation
[Ref.: #25189]	citrate ChEBI	+	oxidation
[Ref.: #25189]	D-galactose ChEBI	+	builds acid from
[Ref.: #25189]	D-galacturonic acid ChEBI	+	oxidation
[Ref.: #25189]	D-glucose ChEBI	+	builds acid from
[Ref.: #25189]	D-mannitol ChEBI	+	oxidation
[Ref.: #25189]	D-mannose ChEBI	+	oxidation
[Ref.: #25189]	D-ribose ChEBI	+	builds acid from
[Ref.: #25189]	D-xylose ChEBI	+	builds acid from
[Ref.: #25189]	esculin ChEBI	+	builds acid from
[Ref.: #25189]	gelatin ChEBI	-	hydrolysis
[Ref.: #25189]	gelatin ChEBI	+	hydrolysis
[Ref.: #25189]	gelatin ChEBI	+	oxidation
[Ref.: #25189]	gentiobiose ChEBI	+	builds acid from
[Ref.: #25189]	gentiobiose ChEBI	+	oxidation
[Ref.: #25189]	glycogen ChEBI	+	builds acid from
[Ref.: #25189]	L-histidine ChEBI	+	oxidation
[Ref.: #25189]	lactose ChEBI	+	builds acid from
[Ref.: #25189]	maltose ChEBI	+	oxidation
[Ref.: #25189]	myo-inositol ChEBI	+	oxidation
[Ref.: #25189]	N-acetyl-beta-D-mannosamine ChEBI	+	oxidation
[Ref.: #25189]	nitrate ChEBI	-	reduction
[Ref.: #25189]	nitrate ChEBI	+	reduction
[Ref.: #25189]	starch ChEBI	-	hydrolysis
[Ref.: #25189]	starch ChEBI	+	builds acid from
[Ref.: #25189]	tryptophan ChEBI	-	energy source
[Ref.: #25189]	tryptophan ChEBI	+	energy source
[Ref.: #25189]	tween 80 ChEBI	-	hydrolysis
[Ref.: #25189]	urea ChEBI	-	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity
[Ref.: #25189]	acetylspiramycin ChEBI	yes
[Ref.: #25189]	cefotaxime ChEBI	yes
[Ref.: #25189]	ceftriaxone ChEBI	yes
[Ref.: #25189]	chloramphenicol ChEBI	yes
[Ref.: #25189]	clindamycin ChEBI	yes
[Ref.: #25189]	erythromycin ChEBI	yes
[Ref.: #25189]	lincomycin ChEBI	yes
[Ref.: #25189]	penicillin ChEBI	yes
[Ref.: #25189]	rifampicin ChEBI	yes
[Ref.: #25189]	sulfamethoxydiazine ChEBI	yes

	Metabolite	Production
[Ref.: #25189]	hydrogen sulfide ChEBI	no
[Ref.: #25189]	indole ChEBI	no
[Ref.: #25189]	indole ChEBI	yes

	Physiological tests	Metabolite	Indole test
[Ref.: #25189]		indole ChEBI	-
[Ref.: #25189]		indole ChEBI	+

	Enzyme	Enzyme activity	EC number
[Ref.: #25189]	acid phosphatase	+	3.1.3.2
[Ref.: #25189]	alkaline phosphatase	+	3.1.3.1
[Ref.: #25189]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #25189]	alpha-fucosidase	-	3.2.1.51
[Ref.: #25189]	alpha-galactosidase	-	3.2.1.22
[Ref.: #25189]	alpha-glucosidase	-	3.2.1.20
[Ref.: #25189]	alpha-mannosidase	-	3.2.1.24
[Ref.: #25189]	beta-galactosidase	-	3.2.1.23
[Ref.: #25189]	beta-glucosidase	-	3.2.1.21
[Ref.: #25189]	beta-glucuronidase	-	3.2.1.31
[Ref.: #25189]	catalase	+	1.11.1.6
[Ref.: #25189]	catalase	-	1.11.1.6
[Ref.: #25189]	cystine arylamidase	-	3.4.11.3
[Ref.: #25189]	cytochrome oxidase	-	1.9.3.1
[Ref.: #25189]	cytochrome oxidase	+	1.9.3.1
[Ref.: #25189]	esterase (C 4)	+
[Ref.: #25189]	esterase Lipase (C 8)	-
[Ref.: #25189]	leucine arylamidase	-	3.4.11.1
[Ref.: #25189]	lipase (C 14)	-
[Ref.: #25189]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #25189]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #25189]	trypsin	-	3.4.21.4
[Ref.: #25189]	tryptophan deaminase	-	4.1.99.1
[Ref.: #25189]	tryptophan deaminase	+	4.1.99.1
[Ref.: #25189]	valine arylamidase	+
[Ref.: #25189]	valine arylamidase	-
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #25189]	Sample type/isolated from	sea squirt (Styela clava)
[Ref.: #25189]	Geographic location (country and/or sea, region)	coastal area of Weihai
[Ref.: #25189]	Country	China
[Ref.: #25189]	Country ISO 3 Code	CHN
[Ref.: #25189]	Continent	Asia
[Ref.: #25189]	Geographic location	37.0000°/122.0000°
[Ref.: #25189]	Enrichment culture	marine agar 2216 (MA; Difco)
[Ref.: #25189]	Enrichment culture duration	7 days
[Ref.: #25189]	Enrichment culture temperature	28 ̊C

[Ref.: #67771]	Sample type/isolated from	From sea squirt, `Styela clava`
[Ref.: #67771]	Geographic location (country and/or sea, region)	coastal area of Weihai
[Ref.: #67771]	Country	China
[Ref.: #67771]	Country ISO 3 Code	CHN
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host

#Invertebrates (Other)

#Tunicata

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence JF721990 (>99% sequence identity) for Saccharicrinis aurantiacus subclade from Microbeatlas

Aquatic Samples	1033
Soil Samples	15
Animal Samples	99
Plant Samples	44
Total Samples	1191

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #25189]	Cytophaga sp. HQYD1 16S ribosomal RNA gene, partial sequence	JF721990	1442	GenBank	1849719 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Saccharicrinis aurantiacus HQYD1	GCA_001660705	contig	GenBank	1849719 tax ID	*

[Ref.: #25189]	GC-content	35.1 mol%	high performance liquid chromatography (HPLC)
[Ref.: #25189]	GC-content	36.1 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67771]	GC-content	35.1 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Saccharicrinis aurantiacus HQYD1 NCBI: GCA_001660705.1
[Ref.: #69480]	flagellated	no	91.716	yes
[Ref.: #69480]	gram-positive	no	98.592	yes
[Ref.: #69480]	anaerobic	no	71.257	yes
[Ref.: #69480]	aerobic	no	77.893	yes
[Ref.: #69480]	halophile	no	78.45	no
[Ref.: #69480]	spore-forming	no	91.881	no
[Ref.: #69480]	glucose-util	yes	90.483	no
[Ref.: #69480]	motile	no	76.291	yes
[Ref.: #69480]	glucose-ferment	no	63.422	no
[Ref.: #69480]	thermophile	no	99.479	no
[Ref.: #69480]	flagellated	no	91.716	yes
[Ref.: #69480]	gram-positive	no	98.592	yes
[Ref.: #69480]	anaerobic	no	71.257	yes
[Ref.: #69480]	aerobic	no	77.893	yes
[Ref.: #69480]	halophile	no	78.45	no
[Ref.: #69480]	spore-forming	no	91.881	no
[Ref.: #69480]	glucose-util	yes	90.483	no
[Ref.: #69480]	motile	no	76.291	yes
[Ref.: #69480]	thermophile	no	99.479	no
[Ref.: #69480]	glucose-ferment	no	63.422	no

Availability in culture collections External links

[Ref.: #25189]

Culture collection no.

MCCC 1K02304, KCTC 42583

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#25189

D. C. Z. Lu, J. X.,Wang, F. Q.,Xie, Z. H.,Du, Z. J.: Labilibacter aurantiacus gen. nov., sp. nov., isolated from sea squirt (Styela clava) and reclassification of Saccharicrinis marinus as Labilibacter marinus comb. nov. IJSEM 67: 441 - 446 2017 ( DOI 10.1099/ijsem.0.001649 , PubMed 27902253 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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