Algoriphagus iocasae (DSM 102044, CCTCC AB 2015446, S61)

Name: Algoriphagus iocasae (DSM 102044, CCTCC AB 2015446, S61)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 133329

Type strain

Strain Designation S61

Culture col. no. DSM 102044 CCTCC AB 2015446 S61

NCBI tax ID(s) 1836499

Special Collections DSMZ Literature strains

Links

Algoriphagus iocasae S61 is an anaerobe, Gram-negative, rod-shaped prokaryote that forms circular colonies and was isolated from deep-sea sediment.

Gram-negative rod-shaped colony-forming anaerobe genome sequence 16S sequence

Name and taxonomic classification

SI-ID 397614

KCTC 52359,DSM 102044

@ref 20215

Last LPSN update 2025-12-16 10:01:45

Domain Pseudomonadati

Phylum Bacteroidota

Class Cytophagia

Order Cytophagales

Family Cyclobacteriaceae

Genus Algoriphagus

Species Algoriphagus iocasae

Full scientific name Algoriphagus iocasae Sun and Sun 2017

BacDive ID	Other strains from **Algoriphagus iocasae** (1)	Type strain
140256	A. iocasae

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
25178	negative	0.8-1.0 µm	0.4-0.6 µm	rod-shaped
125438					91.5
125438	negative				95.5
125439	negative				95.1

Colony morphology

@ref	Colony size	Colony color	Colony shape	Medium used
25178	0.8-1.0 mm	strong orange	circular	marine agar (MA)

Pigmentation

@ref	Production	Name
25178		Flexirubin-type

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
25178	marine agar (MA)
42863	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)		Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
25178	positive	growth	4.0-37.0
25178	positive	optimum	25	mesophilic
42863	positive	growth	28	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
25178	positive	optimum	7
25178	positive	growth	6.0-10.0	alkaliphile

Physiology and metabolism

Oxygen tolerance

25178

Oxygen toleranceanaerobe

Spore formation

@ref	Spore formation	Confidence
25178
125439		94.7

Halophily

@ref	Salt	Growth	Tested relation	Concentration
25178	NaCl		optimum	2 %
25178	NaCl	positive	growth	0.0-8.0 %(w/v)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
25178	16808 ChEBI	2-dehydro-D-gluconate	-	builds acid from
25178	90259 ChEBI	4-nitrophenyl beta-D-glucopyranoside	+	hydrolysis
25178	58143 ChEBI	5-dehydro-D-gluconate	-	builds acid from
25178	27613 ChEBI	amygdalin	+	builds acid from
25178	18305 ChEBI	arbutin	+	builds acid from
25178		casein	+	hydrolysis
25178	17057 ChEBI	cellobiose	+	builds acid from
25178	18333 ChEBI	D-arabitol	-	builds acid from
25178	62318 ChEBI	D-lyxose	+	builds acid from
25178	65327 ChEBI	D-xylose	+	builds acid from
25178	17113 ChEBI	erythritol	-	builds acid from
25178	4853 ChEBI	esculin	+	hydrolysis
25178	4853 ChEBI	esculin	+	builds acid from
25178	28757 ChEBI	fructose	+	builds acid from
25178	16813 ChEBI	galactitol	-	builds acid from
25178	28260 ChEBI	galactose	+	builds acid from
25178	17234 ChEBI	glucose	+	builds acid from
25178	17754 ChEBI	glycerol	-	builds acid from
25178	18403 ChEBI	L-arabitol	-	builds acid from
25178	65328 ChEBI	L-xylose	+	builds acid from
25178	17716 ChEBI	lactose	+	builds acid from
25178	17306 ChEBI	maltose	+	builds acid from
25178	29864 ChEBI	mannitol	-	builds acid from
25178	37684 ChEBI	mannose	+	builds acid from
25178	6731 ChEBI	melezitose	+	builds acid from
25178	320061 ChEBI	methyl alpha-D-glucopyranoside	+	builds acid from
25178	43943 ChEBI	methyl alpha-D-mannoside	+	builds acid from
25178	74863 ChEBI	methyl beta-D-xylopyranoside	+	builds acid from
25178	17268 ChEBI	myo-inositol	-	builds acid from
25178	506227 ChEBI	N-acetylglucosamine	+	builds acid from
25178	17632 ChEBI	nitrate	-	reduction
25178	16634 ChEBI	raffinose	+	builds acid from
25178	15963 ChEBI	ribitol	-	builds acid from
25178	17814 ChEBI	salicin	+	builds acid from
25178	30911 ChEBI	sorbitol	-	builds acid from
25178	28017 ChEBI	starch	+	hydrolysis
25178	17992 ChEBI	sucrose	+	builds acid from
25178	27897 ChEBI	tryptophan	-	energy source
25178	32528 ChEBI	turanose	+	builds acid from
25178	53424 ChEBI	tween 20	+	hydrolysis
25178	53423 ChEBI	tween 40	+	hydrolysis
25178	53425 ChEBI	tween 60	-	hydrolysis
25178	53426 ChEBI	tween 80	+	hydrolysis

Antibiotic resistance

@ref	ChEBI	Metabolite	Sensitivity conc.
25178	2637	amikacin	30 µg (disc)
25178	28971	ampicillin	10 µg (disc)
25178	3393	carbenicillin	100 µg (disc)
25178	474053	cefazolin	30 µg (disc)
25178	3493	cefoperazone	75 µg (disc)
25178	3508	ceftazidime	30 µg (disc)
25178	29007	ceftriaxone	30 µg (disc)
25178	3515	cefuroxime	30 µg (disc)
25178	3534	cephalexin	30 µg (disc)
25178	3547	cephradine	30 µg (disc)
25178	17698	chloramphenicol	30 µg (disc)
25178	100241	ciprofloxacin	5 µg (disc)
25178	3745	clindamycin	2 µg (disc)
25178	50845	doxycycline	30 µg (disc)
25178	48923	erythromycin	15 µg (disc)
25178	5195	furazolidone	300 µg (disc)
25178	17833	gentamicin	10 µg (disc)
25178	6104	kanamycin	30 µg (disc)
25178	31845	midecamycin	30 µg (disc)
25178	50694	minocycline	30 µg (disc)
25178	7507	neomycin	30 µg (disc)
25178	100246	norfloxacin	10 µg (disc)
25178	7731	ofloxacin	5 µg (disc)
25178	7809	oxacillin	1 µg (disc)
25178	8232	piperacillin	100 µg (disc)
25178	8309	polymyxin b	300 Unit
25178	9332	sulfamethoxazole	1.25 µg (disc)
25178	27902	tetracycline	30 µg (disc)
25178	28001	vancomycin	30 µg (disc)

Metabolite production

@ref	Chebi-ID	Metabolite	Production
25178	15688 ChEBI	acetoin
25178	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Indole test
25178	15688 ChEBI	acetoin	-
25178	35581 ChEBI	indole		-

Enzymes

@ref	Value	Activity	Ec
25178	acid phosphatase	+	3.1.3.2
25178	alkaline phosphatase	+	3.1.3.1
25178	alpha-chymotrypsin	+	3.4.21.1
25178	alpha-fucosidase	+	3.2.1.51
25178	alpha-galactosidase	+	3.2.1.22
25178	alpha-glucosidase	+	3.2.1.20
25178	alpha-mannosidase	+	3.2.1.24
25178	beta-galactosidase	+	3.2.1.23
25178	catalase	-	1.11.1.6
25178	cystine arylamidase	-	3.4.11.3
25178	cytochrome oxidase	+	1.9.3.1
25178	esterase (C 4)	-
25178	esterase Lipase (C 8)	+
25178	gelatinase	-
25178	leucine arylamidase	+	3.4.11.1
25178	lipase (C 14)	-
25178	N-acetyl-beta-glucosaminidase	+	3.2.1.52
25178	naphthol-AS-BI-phosphohydrolase	+
25178	trypsin	+	3.4.21.4
25178	tryptophan deaminase	-	4.1.99.1
25178	urease	-	3.5.1.5
25178	valine arylamidase	+

Fatty acid profile

Metadata FA analysis

@ref

25178

Fatty acid	Percentage
C15:0 iso	28.8
C16:1ω6c / C16:1ω7c	21.3
C17:0 iso 3OH	9.9
C16:1ω5c	6.3
C16:0 iso	5.3
C17:1ω9c / 10-Methyl C16:0	4.7
C16:0 3OH	4.6
iso-C15:0 3-0H	3.8
C15:0 anteiso	2.4
C17:1 I / anteiso-C17:1 B	2.3
C16:0 iso 3OH	2.2
C16:1 iso H	1.9
C17:1ω6c	1.6
C16:0	0.7
C17:0 2OH	0.6
C15:1ω6c	0.6
C14:0	0.5
C17:0 iso	0.5

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

Isolation

@ref	Sample type	Sampling date	Geographic location	Latitude	Longitude	Enrichment culture	Enrichment culture duration	Enrichment culture temperature	Country
25178	deep-sea sediment	April 2014	Okinawa Trough (depth of 1474 m)	27.37	126.07 27.37/126.07	marine agar plates (MA) (Haibo)	5 days	28
42863	deep-sea sediment		Okinawa Trough (126.07° E 27.37° N, at a depth of 1474 m)	27.37	126.07 27.37/126.07				International waters

Taxonmaps

69479

Global distribution of 16S sequence KX002012 (>99% sequence identity) for Algoriphagus iocasae from Microbeatlas

Aquatic Samples	34
Soil Samples	5
Animal Samples	1
Plant Samples
Total Samples	40

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
42863	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1420687v1 assembly for Algoriphagus iocasae DSM 102044	scaffold	GCA_014206875	1836499.3	2828441503	1836499	74.22

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
42863	Algoriphagus iocasae strain S61 16S ribosomal RNA gene, partial sequence	KX002012	1439		1836499

GC content

@ref	GC-content (mol%)	Method
42863	40.2	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Algoriphagus iocasae DSM 102044
NCBI: GCA_014206875

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	94.70	no
125439	motility	BacteriaNetⓘ	no	76.80	no
125439	gram_stain	BacteriaNetⓘ	negative	95.10	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	82.20	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Algoriphagus iocasae DSM 102044
NCBI: GCA_014206875.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	95.50	yes
125438	anaerobic	anaerobicⓘ	no	80.61	yes
125438	aerobic	aerobicⓘ	yes	83.86	yes
125438	spore-forming	spore-formingⓘ	no	86.44	yes
125438	thermophilic	thermophileⓘ	no	95.60	no
125438	flagellated	motile2+ⓘ	no	91.50	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Description of Algoriphagus iocasae sp. nov., isolated from deep-sea sediment.	Sun QL, Sun L	Int J Syst Evol Microbiol	10.1099/ijsem.0.001605	2017

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#25178	Q. L. S. Sun, L.: Description of Algoriphagus iocasae sp. nov., isolated from deep-sea sediment. IJSEM 67: 243 - 249 2017 ( DOI 10.1099/ijsem.0.001605 , PubMed 27902238 )
#42863	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 102044
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Algoriphagus iocasae (DSM 102044, CCTCC AB 2015446, S61)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Antibiotic resistance

Metabolite production

Metabolite tests

Enzymes

Fatty acid profile?

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_014206875

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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Social Media

Fatty acid profile