Name: Primorskyibacter aestuariivivens OITF-36
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133303

Type strain:

Species: Primorskyibacter aestuariivivens

Strain Designation: OITF-36

Culture col. no.: KCTC 52455, NBRC 112419

NCBI tax ID(s): 1888912 (species)

Section

Primorskyibacter aestuariivivens OITF-36 is a mesophilic bacterium that forms circular colonies and was isolated from tidal flat in Oido.

colony-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodobacterales*
	Family	*Roseobacteraceae*
	Genus	*Primorskyibacter*
	Species	**Primorskyibacter aestuariivivens**
	Full Scientific Name (LPSN)	Primorskyibacter aestuariivivens Park et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #25052]	Colony size	1.0-1.5 mm
[Ref.: #25052]	Colony color	greyish-yellow
[Ref.: #25052]	Colony shape	circular
[Ref.: #25052]	Incubation period	5 days
[Ref.: #25052]	Cultivation medium used	MA

Information on culture and growth conditions Culture and growth conditions

[Ref.: #25052]

Culture medium

Marine agar (MA)

[Ref.: #25052]

Culture medium growth

	Kind of temperature		Temperature
[Ref.: #25052]		optimum	30 °C
[Ref.: #25052]		growth	10 °C
[Ref.: #25052]		growth	40 °C
[Ref.: #25052]	no	growth	4 °C
[Ref.: #25052]	no	growth	45 °C

[Ref.: #25052]	Temperature range	mesophilic
[Ref.: #25052]	Temperature range	psychrophilic
[Ref.: #25052]	Temperature range	thermophilic
[Ref.: #25052]	Temperature range	psychrophilic
[Ref.: #25052]	Temperature range	thermophilic

	Kind of pH		pH
[Ref.: #25052]		optimum	7.0-8.0
[Ref.: #25052]		growth	6
[Ref.: #25052]	no	growth	5.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #25052]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #25052]		NaCl		growth	0-9.0	%(w/v)
[Ref.: #25052]		NaCl		optimum	2.0-3.0	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #25052]	acetate ChEBI	+	carbon source
[Ref.: #25052]	benzoate ChEBI	-	carbon source
[Ref.: #25052]	casein	+	hydrolysis
[Ref.: #25052]	cellobiose ChEBI	+	carbon source
[Ref.: #25052]	citrate ChEBI	+	carbon source
[Ref.: #25052]	D-fructose ChEBI	+	carbon source
[Ref.: #25052]	D-galactose ChEBI	+	carbon source
[Ref.: #25052]	D-glucose ChEBI	+	carbon source
[Ref.: #25052]	D-mannose ChEBI	+	carbon source
[Ref.: #25052]	D-xylose ChEBI	-	carbon source
[Ref.: #25052]	esculin ChEBI	-	hydrolysis
[Ref.: #25052]	formate ChEBI	-	carbon source
[Ref.: #25052]	gelatin ChEBI	+	hydrolysis
[Ref.: #25052]	hypoxanthine ChEBI	+	hydrolysis
[Ref.: #25052]	L-arabinose ChEBI	+	carbon source
[Ref.: #25052]	L-glutamate ChEBI	-	carbon source
[Ref.: #25052]	L-malate ChEBI	+	carbon source
[Ref.: #25052]	L-tyrosine ChEBI	+	hydrolysis
[Ref.: #25052]	maltose ChEBI	+	carbon source
[Ref.: #25052]	nitrate ChEBI	+	reduction
[Ref.: #25052]	pyruvate ChEBI	+	carbon source
[Ref.: #25052]	salicin ChEBI	-	carbon source
[Ref.: #25052]	starch ChEBI	-	hydrolysis
[Ref.: #25052]	succinate ChEBI	+	carbon source
[Ref.: #25052]	sucrose ChEBI	-	carbon source
[Ref.: #25052]	trehalose ChEBI	-	carbon source
[Ref.: #25052]	tween 80 ChEBI	-	hydrolysis
[Ref.: #25052]	urea ChEBI	-	hydrolysis
[Ref.: #25052]	xanthine ChEBI	+	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #25052]	ampicillin ChEBI	yes
[Ref.: #25052]	carbenicillin ChEBI	yes
[Ref.: #25052]	cefalotin ChEBI	yes
[Ref.: #25052]	chloramphenicol ChEBI	yes
[Ref.: #25052]	gentamicin ChEBI	no
[Ref.: #25052]	kanamycin ChEBI	yes
[Ref.: #25052]	lincomycin ChEBI		yes
[Ref.: #25052]	neomycin ChEBI	yes
[Ref.: #25052]	novobiocin ChEBI	yes
[Ref.: #25052]	oleandomycin ChEBI	yes
[Ref.: #25052]	penicillin g ChEBI	yes
[Ref.: #25052]	polymyxin b ChEBI	yes
[Ref.: #25052]	streptomycin ChEBI	yes
[Ref.: #25052]	tetracycline ChEBI	yes
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #25052]	acid phosphatase	-	3.1.3.2
[Ref.: #25052]	alkaline phosphatase	+	3.1.3.1
[Ref.: #25052]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #25052]	alpha-fucosidase	-	3.2.1.51
[Ref.: #25052]	alpha-galactosidase	-	3.2.1.22
[Ref.: #25052]	alpha-glucosidase	-	3.2.1.20
[Ref.: #25052]	alpha-mannosidase	-	3.2.1.24
[Ref.: #25052]	beta-galactosidase	-	3.2.1.23
[Ref.: #25052]	beta-glucosidase	-	3.2.1.21
[Ref.: #25052]	beta-glucuronidase	-	3.2.1.31
[Ref.: #25052]	catalase	+	1.11.1.6
[Ref.: #25052]	cystine arylamidase	-	3.4.11.3
[Ref.: #25052]	cytochrome oxidase	+	1.9.3.1
[Ref.: #25052]	esterase (C 4)	+
[Ref.: #25052]	esterase Lipase (C 8)	+
[Ref.: #25052]	leucine arylamidase	+	3.4.11.1
[Ref.: #25052]	lipase (C 14)	-
[Ref.: #25052]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #25052]	naphthol-AS-BI-phosphohydrolase	-
[Ref.: #25052]	trypsin	-	3.4.21.4
[Ref.: #25052]	valine arylamidase	-
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #25052]

Fatty acid	Percentage
C18:1ω7c	92.7
C18:0	2.6
C16:0	1.9
11-Methyl C18:1ω7c	1.3
C10:0 3OH	0.7

Metadata FA analysis

Reference

[Ref.: #25052]

Fatty acid	Percentage	ECL
C18:1ω7c	87.8
11-Methyl C18:1ω7c	4.4
C18:0	2.6
C16:0	2.5
Unknown (ECL) 18.846, C19:1ω6c / cyclo C19:0	0.7	19
C10:0 3OH	0.6

Metadata FA analysis

Reference

[Ref.: #25052]

Fatty acid	Percentage	ECL
C18:1ω7c	86.7
11-Methyl C18:1ω7c	6
C18:0	2.6
C16:0	2.4
Unknown (ECL) 18.846, C19:1ω6c / cyclo C19:0	1	19

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #25052]	Sample type/isolated from	tidal flat in Oido
[Ref.: #25052]	Geographic location (country and/or sea, region)	Oido, Yellow Sea
[Ref.: #25052]	Country	Republic of Korea
[Ref.: #25052]	Country ISO 3 Code	KOR
[Ref.: #25052]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Tidal flat

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #25052]	16S rRNA gene sequence	KX578605	1388	ENA	1888912 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Primorskyibacter aestuariivivens OITF-36	GCA_028023675	contig	GenBank	1888912 tax ID	*

[Ref.: #25052]

GC-content

61.8 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Primorskyibacter aestuariivivens OITF-36 NCBI: GCA_028023675.1
[Ref.: #69480]	motile	no	64.877	no
[Ref.: #69480]	flagellated	no	89.018	no
[Ref.: #69480]	gram-positive	no	98.834	no
[Ref.: #69480]	anaerobic	no	98.153	no
[Ref.: #69480]	aerobic	yes	91.032	no
[Ref.: #69480]	halophile	yes	62.602	no
[Ref.: #69480]	spore-forming	no	95.978	no
[Ref.: #69480]	glucose-ferment	no	91.808	no
[Ref.: #69480]	thermophile	no	97.075	no
[Ref.: #69480]	glucose-util	yes	69.066	no

Availability in culture collections External links

[Ref.: #25052]

Culture collection no.

KCTC 52455, NBRC 112419

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#25052

S. Y. Park, S. Y.,Ha, M. J.,Jung, Y. T.,Yoon, J. H.: Primorskyibacter aestuariivivens sp. nov., isolated from a tidal flat, and emended description of the genus Primorskyibacter. IJSEM 66: 5550 - 5555 2016 ( DOI 10.1099/ijsem.0.001555 , PubMed 27902196 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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