Name: Thalassotalea euphylliae Eup-16
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133279

Type strain:

Species: Thalassotalea euphylliae

Strain Designation: Eup-16

Culture col. no.: BCRC 80910, LMG 29001, KCTC 42743

NCBI tax ID(s): 1655234 (species)

Section

Thalassotalea euphylliae Eup-16 is an aerobe, chemoorganotroph, mesophilic bacterium that forms circular colonies and was isolated from torch coral .

colony-forming
Gram-negative
motile
rod-shaped
aerobe
chemoorganotroph
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Alteromonadales*
	Family	*Colwelliaceae*
	Genus	*Thalassotalea*
	Species	**Thalassotalea euphylliae**
	Full Scientific Name (LPSN)	Thalassotalea euphylliae Sheu et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #25120]	Gram stain	negative

[Ref.: #25120]	Cell length	1.5-2.0 µm

[Ref.: #25120]	Cell width	0.5-0.8 µm

[Ref.: #25120]	Cell shape	rod-shaped

[Ref.: #25120]	Motility	yes

[Ref.: #25120]	Flagellum arrangement	monotrichous, polar

[Ref.: #25120]	Colony size	0.8-1.2 mm
[Ref.: #25120]	Colony color	pale yellow
[Ref.: #25120]	Colony shape	circular
[Ref.: #25120]	Cultivation medium used	MA (marine agar)

Information on culture and growth conditions Culture and growth conditions

[Ref.: #25120]

Culture medium

Marine agar (MA)

[Ref.: #25120]

Culture medium growth

	Temperatures	Kind of temperature		Temperature
[Ref.: #25120]			optimum	25.0-30.0 °C
[Ref.: #25120]			growth	20.0-37.0 °C

[Ref.: #25120]

Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #25120]			optimum	7.5-9.0
[Ref.: #25120]			growth	7.0-10.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #25120]

Oxygen tolerance

aerobe

[Ref.: #25120]

Nutrition type

chemoorganotroph

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #25120]		NaCl		optimum	1	%
[Ref.: #25120]		NaCl		growth	0.5-4.0	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #25120]	(-)-quinic acid ChEBI	+	oxidation
[Ref.: #25120]	acetate ChEBI	+	assimilation
[Ref.: #25120]	acetate ChEBI	+	oxidation
[Ref.: #25120]	alginate ChEBI	-	hydrolysis
[Ref.: #25120]	alpha-D-glucose ChEBI	+	oxidation
[Ref.: #25120]	carboxymethylcellulose ChEBI	-	hydrolysis
[Ref.: #25120]	casein	+	hydrolysis
[Ref.: #25120]	cellobiose ChEBI	+	oxidation
[Ref.: #25120]	cellobiose ChEBI	+	assimilation
[Ref.: #25120]	chitin ChEBI	-	hydrolysis
[Ref.: #25120]	D-fructose ChEBI	+	oxidation
[Ref.: #25120]	D-fructose ChEBI	+	assimilation
[Ref.: #25120]	D-galactose ChEBI	+	oxidation
[Ref.: #25120]	D-galactose ChEBI	+	assimilation
[Ref.: #25120]	D-glucarate ChEBI	+	oxidation
[Ref.: #25120]	D-glucose ChEBI	+	assimilation
[Ref.: #25120]	D-mannitol ChEBI	+	oxidation
[Ref.: #25120]	D-mannose ChEBI	-	assimilation
[Ref.: #25120]	D-sorbitol ChEBI	+	oxidation
[Ref.: #25120]	dna ChEBI	+	hydrolysis
[Ref.: #25120]	erythritol ChEBI	+	oxidation
[Ref.: #25120]	esculin ChEBI	+	hydrolysis
[Ref.: #25120]	gelatin ChEBI	+	hydrolysis
[Ref.: #25120]	gentiobiose ChEBI	+	oxidation
[Ref.: #25120]	glycogen ChEBI	+	oxidation
[Ref.: #25120]	L-alaninamide ChEBI	+	oxidation
[Ref.: #25120]	L-alanine ChEBI	+	oxidation
[Ref.: #25120]	L-glutamate ChEBI	-	assimilation
[Ref.: #25120]	L-proline ChEBI	+	oxidation
[Ref.: #25120]	L-rhamnose ChEBI	+	oxidation
[Ref.: #25120]	L-serine ChEBI	+	oxidation
[Ref.: #25120]	L-threonine ChEBI	+	oxidation
[Ref.: #25120]	maltose ChEBI	+	oxidation
[Ref.: #25120]	maltose ChEBI	+	assimilation
[Ref.: #25120]	melibiose ChEBI	+	oxidation
[Ref.: #25120]	methyl pyruvate ChEBI	+	oxidation
[Ref.: #25120]	N-acetylgalactosamine ChEBI	+	oxidation
[Ref.: #25120]	N-acetylglucosamine ChEBI	+	oxidation
[Ref.: #25120]	nitrate ChEBI	+	reduction
[Ref.: #25120]	propionate ChEBI	+	oxidation
[Ref.: #25120]	ribitol ChEBI	+	oxidation
[Ref.: #25120]	sebacic acid ChEBI	+	oxidation
[Ref.: #25120]	starch ChEBI	+	hydrolysis
[Ref.: #25120]	sucrose ChEBI	+	oxidation
[Ref.: #25120]	sucrose ChEBI	+	assimilation
[Ref.: #25120]	trehalose ChEBI	+	oxidation
[Ref.: #25120]	trehalose ChEBI	+	assimilation
[Ref.: #25120]	tryptophan ChEBI	-	energy source
[Ref.: #25120]	turanose ChEBI	+	oxidation
[Ref.: #25120]	tween 20 ChEBI	+	hydrolysis
[Ref.: #25120]	tween 40 ChEBI	+	hydrolysis
[Ref.: #25120]	tween 40 ChEBI	+	oxidation
[Ref.: #25120]	tween 60 ChEBI	+	hydrolysis
[Ref.: #25120]	tween 80 ChEBI	+	hydrolysis
[Ref.: #25120]	tween 80 ChEBI	+	oxidation
[Ref.: #25120]	urea ChEBI	-	hydrolysis
[Ref.: #25120]	xylitol ChEBI	+	oxidation
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #25120]	ampicillin ChEBI	yes
[Ref.: #25120]	chloramphenicol ChEBI	yes
[Ref.: #25120]	gentamicin ChEBI	yes
[Ref.: #25120]	kanamycin ChEBI		yes
[Ref.: #25120]	nalidixic acid ChEBI	yes
[Ref.: #25120]	novobiocin ChEBI	yes
[Ref.: #25120]	penicillin g ChEBI	yes
[Ref.: #25120]	rifampicin ChEBI	yes
[Ref.: #25120]	streptomycin ChEBI		yes
[Ref.: #25120]	tetracycline ChEBI	yes

	Antibiotica	Group ID of combined antibiotics	Metabolite	Antibiotic sensitivity
[Ref.: #25120]		25	sulfamerazine ChEBI	yes
[Ref.: #25120]		25	trimethoprim ChEBI	yes

	Metabolite production	Metabolite	Production
[Ref.: #25120]		indole ChEBI	no

	Physiological tests	Metabolite	Indole test
[Ref.: #25120]		indole ChEBI	-

	Enzyme	Enzyme activity	EC number
[Ref.: #25120]	acid phosphatase	+	3.1.3.2
[Ref.: #25120]	alkaline phosphatase	+	3.1.3.1
[Ref.: #25120]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #25120]	alpha-fucosidase	-	3.2.1.51
[Ref.: #25120]	alpha-galactosidase	-	3.2.1.22
[Ref.: #25120]	alpha-glucosidase	-	3.2.1.20
[Ref.: #25120]	alpha-mannosidase	-	3.2.1.24
[Ref.: #25120]	arginine dihydrolase	-	3.5.3.6
[Ref.: #25120]	beta-galactosidase	-	3.2.1.23
[Ref.: #25120]	beta-glucuronidase	-	3.2.1.31
[Ref.: #25120]	catalase	+	1.11.1.6
[Ref.: #25120]	cystine arylamidase	+	3.4.11.3
[Ref.: #25120]	cytochrome oxidase	+	1.9.3.1
[Ref.: #25120]	DNase	+
[Ref.: #25120]	esterase (C 4)	+
[Ref.: #25120]	esterase Lipase (C 8)	+
[Ref.: #25120]	leucine arylamidase	+	3.4.11.1
[Ref.: #25120]	lipase	-
[Ref.: #25120]	lipase (C 14)	+
[Ref.: #25120]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #25120]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #25120]	trypsin	-	3.4.21.4
[Ref.: #25120]	tryptophan deaminase	-	4.1.99.1
[Ref.: #25120]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	suberin monomers biosynthesis	100	2 of 2
[Ref.: #66794]	formaldehyde oxidation	100	3 of 3
[Ref.: #66794]	octane oxidation	100	3 of 3
[Ref.: #66794]	teichoic acid biosynthesis	100	1 of 1
[Ref.: #66794]	CMP-KDO biosynthesis	100	4 of 4
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	Entner Doudoroff pathway	100	10 of 10
[Ref.: #66794]	biotin biosynthesis	100	4 of 4
[Ref.: #66794]	cyanate degradation	100	3 of 3
[Ref.: #66794]	L-lactaldehyde degradation	100	3 of 3
[Ref.: #66794]	adipate degradation	100	2 of 2
[Ref.: #66794]	gluconeogenesis	100	8 of 8
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	palmitate biosynthesis	100	22 of 22
[Ref.: #66794]	methylglyoxal degradation	100	5 of 5
[Ref.: #66794]	cis-vaccenate biosynthesis	100	2 of 2
[Ref.: #66794]	valine metabolism	100	9 of 9
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	taurine degradation	100	1 of 1
[Ref.: #66794]	ppGpp biosynthesis	100	4 of 4
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	ubiquinone biosynthesis	100	7 of 7
[Ref.: #66794]	phenylalanine metabolism	92.31	12 of 13
[Ref.: #66794]	serine metabolism	88.89	8 of 9
[Ref.: #66794]	molybdenum cofactor biosynthesis	88.89	8 of 9
[Ref.: #66794]	aspartate and asparagine metabolism	88.89	8 of 9
[Ref.: #66794]	CO2 fixation in Crenarchaeota	88.89	8 of 9
[Ref.: #66794]	lipid A biosynthesis	88.89	8 of 9
[Ref.: #66794]	C4 and CAM-carbon fixation	87.5	7 of 8
[Ref.: #66794]	isoleucine metabolism	87.5	7 of 8
[Ref.: #66794]	tetrahydrofolate metabolism	85.71	12 of 14
[Ref.: #66794]	glutamate and glutamine metabolism	85.71	24 of 28
[Ref.: #66794]	reductive acetyl coenzyme A pathway	85.71	6 of 7
[Ref.: #66794]	glycolate and glyoxylate degradation	83.33	5 of 6
[Ref.: #66794]	NAD metabolism	83.33	15 of 18
[Ref.: #66794]	propionate fermentation	80	8 of 10
[Ref.: #66794]	phenylacetate degradation (aerobic)	80	4 of 5
[Ref.: #66794]	threonine metabolism	80	8 of 10
[Ref.: #66794]	glycine betaine biosynthesis	80	4 of 5
[Ref.: #66794]	peptidoglycan biosynthesis	80	12 of 15
[Ref.: #66794]	cellulose degradation	80	4 of 5
[Ref.: #66794]	alanine metabolism	79.31	23 of 29
[Ref.: #66794]	heme metabolism	78.57	11 of 14
[Ref.: #66794]	photosynthesis	78.57	11 of 14
[Ref.: #66794]	allantoin degradation	77.78	7 of 9
[Ref.: #66794]	d-mannose degradation	77.78	7 of 9
[Ref.: #66794]	chorismate metabolism	77.78	7 of 9
[Ref.: #66794]	purine metabolism	77.66	73 of 94
[Ref.: #66794]	leucine metabolism	76.92	10 of 13
[Ref.: #66794]	histidine metabolism	75.86	22 of 29
[Ref.: #66794]	butanoate fermentation	75	3 of 4
[Ref.: #66794]	acetate fermentation	75	3 of 4
[Ref.: #66794]	glycogen biosynthesis	75	3 of 4
[Ref.: #66794]	sulfopterin metabolism	75	3 of 4
[Ref.: #66794]	flavin biosynthesis	73.33	11 of 15
[Ref.: #66794]	proline metabolism	72.73	8 of 11
[Ref.: #66794]	pentose phosphate pathway	72.73	8 of 11
[Ref.: #66794]	citric acid cycle	71.43	10 of 14
[Ref.: #66794]	cardiolipin biosynthesis	71.43	5 of 7
[Ref.: #66794]	glutathione metabolism	71.43	10 of 14
[Ref.: #66794]	propanol degradation	71.43	5 of 7
[Ref.: #66794]	pyrimidine metabolism	71.11	32 of 45
[Ref.: #66794]	starch degradation	70	7 of 10
[Ref.: #66794]	lipid metabolism	67.74	21 of 31
[Ref.: #66794]	(5R)-carbapenem carboxylate biosynthesis	66.67	2 of 3
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	methionine metabolism	65.38	17 of 26
[Ref.: #66794]	glycolysis	64.71	11 of 17
[Ref.: #66794]	tyrosine metabolism	64.29	9 of 14
[Ref.: #66794]	vitamin B6 metabolism	63.64	7 of 11
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
[Ref.: #66794]	vitamin B1 metabolism	61.54	8 of 13
[Ref.: #66794]	non-pathway related	60.53	23 of 38
[Ref.: #66794]	tryptophan metabolism	60.53	23 of 38
[Ref.: #66794]	metabolism of amino sugars and derivatives	60	3 of 5
[Ref.: #66794]	glycogen metabolism	60	3 of 5
[Ref.: #66794]	arginine metabolism	58.33	14 of 24
[Ref.: #66794]	cysteine metabolism	55.56	10 of 18
[Ref.: #66794]	lysine metabolism	54.76	23 of 42
[Ref.: #66794]	isoprenoid biosynthesis	53.85	14 of 26
[Ref.: #66794]	glycine metabolism	50	5 of 10
[Ref.: #66794]	ethanol fermentation	50	1 of 2
[Ref.: #66794]	pantothenate biosynthesis	50	3 of 6
[Ref.: #66794]	selenocysteine biosynthesis	50	3 of 6
[Ref.: #66794]	aminopropanol phosphate biosynthesis	50	1 of 2
[Ref.: #66794]	quinate degradation	50	1 of 2
[Ref.: #66794]	ketogluconate metabolism	50	4 of 8
[Ref.: #66794]	mannosylglycerate biosynthesis	50	1 of 2
[Ref.: #66794]	polyamine pathway	47.83	11 of 23
[Ref.: #66794]	urea cycle	46.15	6 of 13
[Ref.: #66794]	arachidonic acid metabolism	44.44	8 of 18
[Ref.: #66794]	degradation of hexoses	44.44	8 of 18
[Ref.: #66794]	androgen and estrogen metabolism	43.75	7 of 16
[Ref.: #66794]	degradation of sugar alcohols	43.75	7 of 16
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	41.67	5 of 12
[Ref.: #66794]	gallate degradation	40	2 of 5
[Ref.: #66794]	D-cycloserine biosynthesis	40	2 of 5
[Ref.: #66794]	lipoate biosynthesis	40	2 of 5
[Ref.: #66794]	ethylmalonyl-CoA pathway	40	2 of 5
[Ref.: #66794]	phenol degradation	40	8 of 20
[Ref.: #66794]	bacilysin biosynthesis	40	2 of 5
[Ref.: #66794]	arachidonate biosynthesis	40	2 of 5
[Ref.: #66794]	oxidative phosphorylation	38.46	35 of 91
[Ref.: #66794]	ascorbate metabolism	36.36	8 of 22
[Ref.: #66794]	d-xylose degradation	36.36	4 of 11
[Ref.: #66794]	metabolism of disaccharids	36.36	4 of 11
[Ref.: #66794]	acetyl CoA biosynthesis	33.33	1 of 3
[Ref.: #66794]	nitrate assimilation	33.33	3 of 9
[Ref.: #66794]	methane metabolism	33.33	1 of 3
[Ref.: #66794]	3-phenylpropionate degradation	33.33	5 of 15
[Ref.: #66794]	IAA biosynthesis	33.33	1 of 3
[Ref.: #66794]	enterobactin biosynthesis	33.33	1 of 3
[Ref.: #66794]	degradation of pentoses	32.14	9 of 28
[Ref.: #66794]	degradation of sugar acids	32	8 of 25
[Ref.: #66794]	sulfate reduction	30.77	4 of 13
[Ref.: #66794]	phosphatidylethanolamine bioynthesis	30.77	4 of 13
[Ref.: #66794]	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
[Ref.: #66794]	dTDPLrhamnose biosynthesis	25	2 of 8
[Ref.: #66794]	carnitine metabolism	25	2 of 8
[Ref.: #66794]	lactate fermentation	25	1 of 4
[Ref.: #66794]	alginate biosynthesis	25	1 of 4
[Ref.: #66794]	cyclohexanol degradation	25	1 of 4
[Ref.: #66794]	toluene degradation	25	1 of 4
[Ref.: #66794]	catecholamine biosynthesis	25	1 of 4
[Ref.: #66794]	phenylpropanoid biosynthesis	23.08	3 of 13
[Ref.: #66794]	4-hydroxymandelate degradation	22.22	2 of 9
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #25120]	Sample type/isolated from	torch coral (Euphyllia glabrescens)
[Ref.: #25120]	Geographic location (country and/or sea, region)	Kenting coast (Pingtung County, depth 10–15 m)
[Ref.: #25120]	Country	Taiwan
[Ref.: #25120]	Country ISO 3 Code	TWN
[Ref.: #25120]	Continent	Asia
[Ref.: #25120]	Geographic location	21.0000°/120.0000°
[Ref.: #25120]	Enrichment culture	MA 2216 (marine agar; BD Difco)
[Ref.: #25120]	Enrichment culture duration	5 days
[Ref.: #25120]	Enrichment culture temperature	25 ̊C
* marker position based on {}

Isolation sources categories

#Host

#Invertebrates (Other)

#Cnidaria (Corals)

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #25120]	Thalassotalea sp. Eup-16 partial 16S rRNA gene, strain Eup-16	LN849949	1506	GenBank	1655234 tax ID

[Ref.: #25120]

GC-content

43.2 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #25120]

Culture collection no.

BCRC 80910, LMG 29001, KCTC 42743

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Thalassotalea algicola sp. nov., an alginate-utilizing bacterium isolated from a red alga.	Lian FB, Jiang S, Ren TY, Zhou BJ, Du ZJ	Antonie Van Leeuwenhoek	10.1007/s10482-021-01562-2	2021	*
Phylogeny	Thalassotalea euphylliae sp. nov., isolated from the torch coral Euphyllia glabrescens.	Sheu SY, Liu LP, Tang SL, Chen WM	Int J Syst Evol Microbiol	10.1099/ijsem.0.001466	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#25120

S. Y. L. Sheu, L. P.,Tang, S. L.,Chen, W. M.: Thalassotalea euphylliae sp. nov., isolated from the torch coral Euphyllia glabrescens. IJSEM 66: 5039 - 5045 2016 ( DOI 10.1099/ijsem.0.001466 , PubMed 27582443 )

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

* These data were automatically processed and therefore are not curated

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