Name: Novosphingobium bradum STM-24
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133280

Type strain:

Species: Novosphingobium bradum

Strain Designation: STM-24

Culture col. no.: BCRC 80925, LMG 29291, KCTC 42984

NCBI tax ID(s): 1737444 (species)

Section

Novosphingobium bradum STM-24 is an aerobe, chemoheterotroph, Gram-negative bacterium that forms circular colonies and was isolated from spring.

colony-forming
Gram-negative
rod-shaped
aerobe
chemoheterotroph
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Sphingomonadales*
	Family	*Erythrobacteraceae*
	Genus	*Novosphingobium*
	Species	**Novosphingobium bradum**
	Full Scientific Name (LPSN)	Novosphingobium bradum Sheu et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #25119]	Gram stain	negative

[Ref.: #25119]	Cell length	0.8-2.0 µm

[Ref.: #25119]	Cell width	0.5-0.8 µm

[Ref.: #25119]	Cell shape	rod-shaped

[Ref.: #25119]	Motility	no

[Ref.: #25119]	Colony size	0.3-0.5 mm
[Ref.: #25119]	Colony color	light yellow
[Ref.: #25119]	Colony shape	circular
[Ref.: #25119]	Cultivation medium used	R2A agar (Reasoner's 2A agar)

Information on culture and growth conditions Culture and growth conditions

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Culture medium

NA (Nutrient Agar)

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Culture medium growth

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Culture medium

Reasoner's 2A agar (R2A)

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Culture medium growth

	Temperatures	Kind of temperature		Temperature
[Ref.: #25119]			growth	15.0-30.0 °C
[Ref.: #25119]			optimum	20 °C

[Ref.: #25119]

Temperature range

psychrophilic

	pH	Kind of pH		pH
[Ref.: #25119]			optimum	6
[Ref.: #25119]			growth	5.0-9.0

Information on physiology and metabolism Physiology and metabolism

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Oxygen tolerance

aerobe

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Nutrition type

chemoheterotroph

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Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #25119]		NaCl		growth	0.0-0.5	%
[Ref.: #25119]		NaCl		optimum	0	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #25119]	acetate ChEBI	-	carbon source
[Ref.: #25119]	adipate ChEBI	-	carbon source
[Ref.: #25119]	butyrate ChEBI	-	carbon source
[Ref.: #25119]	carboxymethylcellulose ChEBI	-	hydrolysis
[Ref.: #25119]	casein	+	hydrolysis
[Ref.: #25119]	chitin ChEBI	-	hydrolysis
[Ref.: #25119]	citrate ChEBI	+	carbon source
[Ref.: #25119]	corn oil	-	hydrolysis
[Ref.: #25119]	D-fructose ChEBI	-	carbon source
[Ref.: #25119]	D-galactose ChEBI	-	carbon source
[Ref.: #25119]	D-glucose ChEBI	+	carbon source
[Ref.: #25119]	D-mannitol ChEBI	+	carbon source
[Ref.: #25119]	D-mannose ChEBI	-	carbon source
[Ref.: #25119]	D-rhamnose ChEBI	+	carbon source
[Ref.: #25119]	D-sorbitol ChEBI	+	carbon source
[Ref.: #25119]	dna ChEBI	-	hydrolysis
[Ref.: #25119]	esculin ChEBI	+	hydrolysis
[Ref.: #25119]	gelatin ChEBI	-	hydrolysis
[Ref.: #25119]	gluconate ChEBI	+	carbon source
[Ref.: #25119]	glucose ChEBI	-	fermentation
[Ref.: #25119]	L-alanine ChEBI	+	carbon source
[Ref.: #25119]	L-arabinose ChEBI	-	carbon source
[Ref.: #25119]	L-proline ChEBI	+	carbon source
[Ref.: #25119]	L-rhamnose ChEBI	+	carbon source
[Ref.: #25119]	malate ChEBI	-	carbon source
[Ref.: #25119]	maltose ChEBI	+	carbon source
[Ref.: #25119]	melibiose ChEBI	-	carbon source
[Ref.: #25119]	N-acetylglucosamine ChEBI	-	carbon source
[Ref.: #25119]	nitrate ChEBI	-	reduction
[Ref.: #25119]	starch ChEBI	-	hydrolysis
[Ref.: #25119]	sucrose ChEBI	+	carbon source
[Ref.: #25119]	trehalose ChEBI	+	carbon source
[Ref.: #25119]	tryptophan ChEBI	-	energy source
[Ref.: #25119]	tween 20 ChEBI	-	hydrolysis
[Ref.: #25119]	tween 40 ChEBI	-	hydrolysis
[Ref.: #25119]	tween 60 ChEBI	-	hydrolysis
[Ref.: #25119]	tween 80 ChEBI	+	hydrolysis
[Ref.: #25119]	urea ChEBI	-	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #25119]	ampicillin ChEBI	yes
[Ref.: #25119]	chloramphenicol ChEBI	yes
[Ref.: #25119]	gentamicin ChEBI	yes
[Ref.: #25119]	kanamycin ChEBI	yes
[Ref.: #25119]	nalidixic acid ChEBI		yes
[Ref.: #25119]	novobiocin ChEBI	yes
[Ref.: #25119]	penicillin g ChEBI	yes
[Ref.: #25119]	rifampicin ChEBI	yes
[Ref.: #25119]	streptomycin ChEBI		yes
[Ref.: #25119]	tetracycline ChEBI	yes

	Antibiotica	Group ID of combined antibiotics	Metabolite	Antibiotic sensitivity
[Ref.: #25119]		25	sulfamerazine ChEBI	yes
[Ref.: #25119]		25	trimethoprim ChEBI	yes

	Metabolite production	Metabolite	Production
[Ref.: #25119]		indole ChEBI	no

	Physiological tests	Metabolite	Indole test
[Ref.: #25119]		indole ChEBI	-

	Enzyme	Enzyme activity	EC number
[Ref.: #25119]	acid phosphatase	+	3.1.3.2
[Ref.: #25119]	alkaline phosphatase	+	3.1.3.1
[Ref.: #25119]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #25119]	alpha-fucosidase	-	3.2.1.51
[Ref.: #25119]	alpha-galactosidase	-	3.2.1.22
[Ref.: #25119]	alpha-glucosidase	+	3.2.1.20
[Ref.: #25119]	alpha-mannosidase	-	3.2.1.24
[Ref.: #25119]	arginine dihydrolase	-	3.5.3.6
[Ref.: #25119]	beta-galactosidase	+	3.2.1.23
[Ref.: #25119]	beta-glucosidase	+	3.2.1.21
[Ref.: #25119]	beta-glucuronidase	-	3.2.1.31
[Ref.: #25119]	catalase	-	1.11.1.6
[Ref.: #25119]	cystine arylamidase	-	3.4.11.3
[Ref.: #25119]	cytochrome oxidase	+	1.9.3.1
[Ref.: #25119]	esterase (C 4)	+
[Ref.: #25119]	esterase Lipase (C 8)	+
[Ref.: #25119]	leucine arylamidase	+	3.4.11.1
[Ref.: #25119]	lipase (C 14)	+
[Ref.: #25119]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #25119]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #25119]	trypsin	-	3.4.21.4
[Ref.: #25119]	tryptophan deaminase	-	4.1.99.1
[Ref.: #25119]	urease	-	3.5.1.5
[Ref.: #25119]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #25119]	Sample type/isolated from	spring
[Ref.: #25119]	Geographic location (country and/or sea, region)	vicinity of Miaoli County
[Ref.: #25119]	Country	Taiwan
[Ref.: #25119]	Country ISO 3 Code	TWN
[Ref.: #25119]	Continent	Asia
[Ref.: #25119]	Geographic location	24.5600°/120.8200°
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Spring

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #25119]	Novosphingobium sp. STM-24 partial 16S rRNA gene, strain STM-24	LN890294	1411	GenBank	1737444 tax ID

[Ref.: #25119]

GC-content

69.1 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #25119]

Culture collection no.

BCRC 80925, LMG 29291, KCTC 42984

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Novosphingobium olei sp. nov., with the ability to degrade diesel oil, isolated from oil-contaminated soil and proposal to reclassify Novosphingobium stygium as a later heterotypic synonym of Novosphingobium aromaticivorans.	Chaudhary DK, Dahal RH, Kim DU, Kim J	Int J Syst Evol Microbiol	10.1099/ijsem.0.004628	2021	*
Phylogeny	Novosphingobium bradum sp. nov., isolated from a spring.	Sheu SY, Liu LP, Chen WM	Int J Syst Evol Microbiol	10.1099/ijsem.0.001475	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#25119

S. Y. L. Sheu, L. P.,Chen, W. M.: Novosphingobium bradum sp. nov., isolated from a spring. IJSEM 66: 5083 - 5090 2016 ( DOI 10.1099/ijsem.0.001475 , PubMed 27599476 )

* These data were automatically processed and therefore are not curated

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