Streptomyces lacrimifluminis (Z1027, CGMCC 4.7272, JCM 31054)

Name: Streptomyces lacrimifluminis (Z1027, CGMCC 4.7272, JCM 31054)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 133232

Type strain

Strain Designation Z1027

Culture col. no. Z1027 CGMCC 4.7272 JCM 31054 DSM 111125

NCBI tax ID(s) 1500077

Special Collections DSMZ JCM Literature strains

History <-JCM<-W. Zhang; Cold & Arid Reg. Environ. & Eng. Res. Inst., CAS, China W. Zhang; Cold & Arid Reg. Environ. & Eng. Res. Inst., CAS, China; Z1027.

Links

Streptomyces lacrimifluminis Z1027 is an aerobe, spore-forming, Gram-positive bacterium that was isolated from soil sample.

spore-forming Gram-positive aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 408324

JCM 31054,DSM 111125

@ref 20215

Last LPSN update 2026-02-09 11:31:54

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Kitasatosporales

Family Streptomycetaceae

Genus Streptomyces

Species Streptomyces lacrimifluminis

Full scientific name Streptomyces lacrimifluminis Zhang et al. 2016

Morphology

Cell morphology

@ref	Gram stain	Confidence
25115	positive
125439	positive	99.4
125439		90.5
125438	positive	90.294

Pigmentation

25115

Productionno

Multimedia

@ref:	66470
multimedia content:	DSM_111125.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_111125.jpg
caption:	Medium 84 28°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
66470	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)	Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
66470	ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)	Medium recipe at MediaDive	Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water
66470	STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)	Medium recipe at MediaDive	Name: STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) Composition: Agar 14.985 g/l Starch 9.99001 g/l (NH4)2SO4 1.998 g/l CaCO3 1.998 g/l K2HPO4 0.999001 g/l MgSO4 x 7 H2O 0.999001 g/l NaCl 0.999001 g/l FeSO4 x 7 H2O 0.000999001 g/l MnCl2 x 4 H2O 0.000999001 g/l ZnSO4 x 7 H2O 0.000999001 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
25115	positive	growth	20-40
25115	positive	optimum	30
66470	positive	growth	28
67770	positive	growth	28

Culture pH

@ref	Ability	Type	PH	PH range
25115	positive	optimum	8
25115	positive	growth	6.0-11.0	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
25115	aerobe
125438	aerobe	90.987
125439	obligate aerobe	98.8

Spore formation

@ref	Spore description	Spore formation	Confidence
25115	straight chains of cylindrical and smooth-surfaced white–grey spores
125438			92.078

Halophily

@ref	Salt	Growth	Tested relation	Concentration
25115	NaCl	positive	maximum	4 %(w/v)
25115	NaCl		optimum	0-2.0 %(w/v)

Observation

67770

Observationquinones: MK-9(H₆), MK-9(H₈)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
25115	62968 ChEBI	cellulose	+	degradation
25115	15824 ChEBI	D-fructose	+	carbon source
25115	12936 ChEBI	D-galactose	+	carbon source
25115	17634 ChEBI	D-glucose	+	carbon source
25115	16899 ChEBI	D-mannitol	+	carbon source
25115	65327 ChEBI	D-xylose	+	carbon source
25115	5291 ChEBI	gelatin	+	degradation
25115	16977 ChEBI	L-alanine	-	nitrogen source
25115	30849 ChEBI	L-arabinose	+	carbon source
25115	17196 ChEBI	L-asparagine	+	nitrogen source
25115	17561 ChEBI	L-cysteine	-	nitrogen source
25115	15971 ChEBI	L-histidine	-	nitrogen source
25115	62345 ChEBI	L-rhamnose	+	carbon source
25115	17716 ChEBI	lactose	+	carbon source
25115	25017 ChEBI	leucine	+	nitrogen source
25115	17268 ChEBI	myo-inositol	+	carbon source
25115	16634 ChEBI	raffinose	+	carbon source
25115	28017 ChEBI	starch	+	degradation
25115	17992 ChEBI	sucrose	+	carbon source
25115	53424 ChEBI	tween 20	+	degradation
25115	53426 ChEBI	tween 80	-	degradation

Enzymes

@ref	Value	Activity	Ec
25115	urease	+	3.5.1.5

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Enrichment culture	Enrichment culture composition	Enrichment culture duration	Enrichment culture temperature
25115	soil sample	Tuotuo River, Qinghai–Tibet Plateau	China	CHN	Asia	Gause’s synthetic agar medium	per litre distilled water: 20.0g soluble starch, 1.0g KNO3, 0.5g K2HPO4.3H2O, 0.5g MgSO4.7H2O, 0.001g FeSO4, 0.5g NaCl, 20.0 agar; pH 7.2	7 days	30
66470	Soil	near the Tuotuo River Qinghai, China	China	CHN	Asia
67770	Soil near the Tuotuo River	Qinghai	China	CHN	Asia

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
66470	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
124043	ASM3954025v1 assembly for Streptomyces lacrimifluminis JCM 31054	contig	GCA_039540255			1500077	49.33
66792	ASM1464609v1 assembly for Streptomyces lacrimifluminis CGMCC 4.7272	scaffold	GCA_014646095	1500077.3	2997644926	1500077	49

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
25115	Streptomyces lacrimifluminis strain Z1027 16S ribosomal RNA gene, partial sequence	KJ829342	1495		1500077

GC content

@ref	GC-content (mol%)	Method
25115	73.0-75.0	Thermal denaturation, fluorometry
66470	74.1	thermal denaturation, midpoint method (Tm)
67770	74	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Streptomyces lacrimifluminis CGMCC 4.7272
NCBI: GCA_014646095

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	83.20	no
125439	motility	BacteriaNetⓘ	no	90.50	no
125439	gram_stain	BacteriaNetⓘ	positive	99.40	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.80	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Streptomyces lacrimifluminis CGMCC 4.7272
NCBI: GCA_014646095.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	90.29	yes
125438	anaerobic	anaerobicⓘ	no	96.87	yes
125438	aerobic	aerobicⓘ	yes	90.99	yes
125438	spore-forming	spore-formingⓘ	yes	92.08	no
125438	thermophilic	thermophileⓘ	no	93.50	no
125438	flagellated	motile2+ⓘ	no	88.50	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptomyces lacrimifluminis sp. nov., a novel actinobacterium that produces antibacterial compounds, isolated from soil.	Zhang B, Tang S, Chen X, Zhang L, Zhang G, Zhang W, Liu G, Chen T, Li S, Dyson P	Int J Syst Evol Microbiol	10.1099/ijsem.0.001456	2016

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#25115	B. T. Zhang, S.,Chen, X.,Zhang, L.,Zhang, G.,Zhang, W.,Liu, G.,Chen, T.,Li, S.,Dyson, P.: Streptomyces lacrimifluminis sp. nov., a novel actinobacterium that produces antibacterial compounds, isolated from soil. IJSEM 66: 4981 - 4986 2016 ( DOI 10.1099/ijsem.0.001456 , PubMed 27601150 )
#66470	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 111125
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Streptomyces lacrimifluminis (Z1027, CGMCC 4.7272, JCM 31054)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_039540255

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media