Pseudomonas turukhanskensis (IB1.1, VKM B-2935, CECT 9091)

Name: Pseudomonas turukhanskensis (IB1.1, VKM B-2935, CECT 9091)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 133231

Type strain

Strain Designation IB1.1

Culture col. no. IB1.1 VKM B-2935 CECT 9091

NCBI tax ID(s) 1806536

Special Collections Literature strains

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Pseudomonas turukhanskensis IB1.1 is an aerobe, Gram-negative, motile bacterium that forms circular colonies and was isolated from oil-contaminated soil.

Gram-negative motile rod-shaped colony-forming aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 26898

CECT 9091,VKM B-2935

@ref 20215

Last LPSN update 2026-02-09 11:31:54

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Pseudomonadales

Family Pseudomonadaceae

Genus Pseudomonas

Species Pseudomonas turukhanskensis

Full scientific name Pseudomonas turukhanskensis Korshunova et al. 2016

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility	Flagellum arrangement
25018	negative	rod-shaped		polar

Colony morphology

@ref	Colony size	Colony color	Colony shape	Incubation period	Medium used
25018	2.5-3.3 mm	beige	circular	3 days	nutrient agar

Pigmentation

@ref	Production	Name
25018		fluorescent pigment

Culture and growth conditions

Culture medium

@ref	Name	Growth
25018	Nutrient agar (NA)

Culture temp

@ref	Growth	Type	Temperature (°C)
25018	positive	growth	0-34

Culture pH

@ref	Ability	Type	PH
25018	positive	growth	6.0-8.0

Physiology and metabolism

Oxygen tolerance

25018

Oxygen toleranceaerobe

Spore formation

25018

Spore formationno

Halophily

@ref	Salt	Growth	Tested relation	Concentration
25018	NaCl		growth	5 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
25018	62064 ChEBI	2,3-butanediol	-	respiration
25018	64552 ChEBI	2-hydroxybutyrate	-	respiration
25018	16763 ChEBI	2-oxobutanoate	-	respiration
25018	28644 ChEBI	2-oxopentanoate	-	respiration
25018	18101 ChEBI	4-hydroxyphenylacetic acid	+	assimilation
25018	30089 ChEBI	acetate	+	respiration
25018	17128 ChEBI	adipate	+	assimilation
25018	40585 ChEBI	alpha-cyclodextrin	-	respiration
25018	17925 ChEBI	alpha-D-glucose	+	respiration
25018	36219 ChEBI	alpha-lactose	-	respiration
25018	8295 ChEBI	beta-hydroxybutyrate	+	respiration
25018	73706 ChEBI	bromosuccinate	+	respiration
25018	17126 ChEBI	carnitine	+	respiration
25018	17057 ChEBI	cellobiose	+	assimilation
25018	16383 ChEBI	cis-aconitate	+	respiration
25018	16947 ChEBI	citrate	-	assimilation
25018	16947 ChEBI	citrate	+	respiration
25018	15570 ChEBI	D-alanine	+	respiration
25018	18333 ChEBI	D-arabitol	+	assimilation
25018	15824 ChEBI	D-fructose	+	respiration
25018	15895 ChEBI	D-galactonic acid lactone	+	assimilation
25018	12936 ChEBI	D-galactose	-	respiration
25018	18024 ChEBI	D-galacturonic acid	+	respiration
25018	30612 ChEBI	D-glucarate	+	respiration
25018	8391 ChEBI	D-gluconate	+	respiration
25018	17315 ChEBI	D-glucosamine	+	respiration
25018	14314 ChEBI	D-glucose 6-phosphate	-	respiration
25018	15748 ChEBI	D-glucuronate	+	respiration
25018	16899 ChEBI	D-mannitol	+	respiration
25018	16024 ChEBI	D-mannose	+	respiration
25018	27605 ChEBI	D-psicose	-	respiration
25018	16523 ChEBI	D-serine	-	respiration
25018	17924 ChEBI	D-sorbitol	+	respiration
25018	16398 ChEBI	D-threonine	-	respiration
25018	27689 ChEBI	decanoate	+	assimilation
25018	23652 ChEBI	dextrin	-	respiration
25018	17113 ChEBI	erythritol	-	respiration
25018	4853 ChEBI	esculin	-	hydrolysis
25018	16000 ChEBI	ethanolamine	-	respiration
25018	15740 ChEBI	formate	-	respiration
25018	16865 ChEBI	gamma-aminobutyric acid	+	respiration
25018	28066 ChEBI	gentiobiose	+	assimilation
25018	24265 ChEBI	gluconate	-	assimilation
25018	17234 ChEBI	glucose	+	assimilation
25018	29042 ChEBI	glucose 1-phosphate	+	assimilation
25018	32323 ChEBI	glucuronamide	-	respiration
25018	17754 ChEBI	glycerol	-	respiration
25018	14336 ChEBI	glycerol 1-phosphate	+	assimilation
25018	28087 ChEBI	glycogen	-	respiration
25018	73804 ChEBI	glycyl L-aspartic acid	-	respiration
25018	73784 ChEBI	glycyl-l-glutamate	+	respiration
25018	24741 ChEBI	hydroxyproline	+	assimilation
25018	17596 ChEBI	inosine	-	respiration
25018	17240 ChEBI	itaconate	-	respiration
25018	21217 ChEBI	L-alaninamide	+	respiration
25018	16977 ChEBI	L-alanine	+	respiration
25018	73786 ChEBI	L-alanylglycine	+	respiration
25018	30849 ChEBI	L-arabinose	-	respiration
25018	17196 ChEBI	L-asparagine	+	respiration
25018	29991 ChEBI	L-aspartate	+	respiration
25018	18287 ChEBI	L-fucose	-	respiration
25018	29985 ChEBI	L-glutamate	+	respiration
25018	15971 ChEBI	L-histidine	+	respiration
25018	15603 ChEBI	L-leucine	+	assimilation
25018	15729 ChEBI	L-ornithine	-	respiration
25018	17295 ChEBI	L-phenylalanine	-	respiration
25018	17203 ChEBI	L-proline	+	respiration
25018	18183 ChEBI	L-pyroglutamic acid	+	assimilation
25018	62345 ChEBI	L-rhamnose	-	respiration
25018	17115 ChEBI	L-serine	+	assimilation
25018	6359 ChEBI	lactulose	-	respiration
25018	25115 ChEBI	malate	+	assimilation
25018	17306 ChEBI	maltose	-	assimilation
25018	17306 ChEBI	maltose	-	respiration
25018	29864 ChEBI	mannitol	+	assimilation
25018	37684 ChEBI	mannose	+	assimilation
25018	28053 ChEBI	melibiose	-	respiration
25018	320055 ChEBI	methyl beta-D-glucopyranoside	-	respiration
25018	51850 ChEBI	methyl pyruvate	+	respiration
25018	75146 ChEBI	monomethyl succinate	+	respiration
25018	17268 ChEBI	myo-inositol	-	respiration
25018	28037 ChEBI	N-acetylgalactosamine	-	respiration
25018	506227 ChEBI	N-acetylglucosamine	-	assimilation
25018	506227 ChEBI	N-acetylglucosamine	-	respiration
25018	17632 ChEBI	nitrate	-	reduction
25018	18401 ChEBI	phenylacetate	-	assimilation
25018	50048 ChEBI	phenylethylamine	-	respiration
25018	17272 ChEBI	propionate	+	assimilation
25018	17148 ChEBI	putrescine	+	respiration
25018	16634 ChEBI	raffinose	-	respiration
25018	15963 ChEBI	ribitol	-	respiration
25018	41865 ChEBI	sebacic acid	-	respiration
25018	62983 ChEBI	sodium malonate	-	respiration
25018	143136 ChEBI	succinamate	-	respiration
25018	30031 ChEBI	succinate	+	respiration
25018	17992 ChEBI	sucrose	+	respiration
25018	17748 ChEBI	thymidine	-	respiration
25018	27082 ChEBI	trehalose	+	respiration
25018	27897 ChEBI	tryptophan	-	energy source
25018	32528 ChEBI	turanose	-	respiration
25018	53423 ChEBI	tween 40	+	respiration
25018	53426 ChEBI	tween 80	+	respiration
25018	16704 ChEBI	uridine	-	respiration
25018	27248 ChEBI	urocanic acid	+	respiration
25018	17151 ChEBI	xylitol	-	respiration

Metabolite production

@ref	Chebi-ID	Metabolite	Production
25018	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
25018	35581 ChEBI	indole	-

Enzymes

@ref	Value	Activity	Ec
25018	arginine dihydrolase	-	3.5.3.6
25018	beta-galactosidase	-	3.2.1.23
25018	catalase	+	1.11.1.6
25018	cytochrome oxidase	+	1.9.3.1
25018	tryptophan deaminase	-	4.1.99.1
25018	urease	-	3.5.1.5

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Contamination	#Oil (Fuel)
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
25018	oil-contaminated soil	Turukhansk District, East Siberia	Russia	RUS	Asia

Taxonmaps

69479

Global distribution of 16S sequence KP306892 (>99% sequence identity) for Pseudomonas from Microbeatlas

Aquatic Samples	21
Soil Samples	18
Animal Samples	14
Plant Samples	18
Total Samples	71

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
124043	ASM2792236v1 assembly for Pseudomonas turukhanskensis VKM B-2935	scaffold	GCA_027922365	1806536.3	8104513975	1806536	64.45

16S sequences

@ref	Description	Accession	Database
25018	Pseudomonas turukhanskensis strain IB1.1 16S ribosomal RNA gene, partial sequence	KP306892

GC content

@ref	GC-content (mol%)	Method
25018	58.5	Thermal denaturation, fluorometry

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
	Evaluation of aerobic biodegradation of phenanthrene using Pseudomonas turukhanskensis: an optimized study.	Sharma M, Salama ES, Usman M, Khan A, Arif M, Li X.	Biodegradation	10.1007/s10532-022-10002-5	2023
	Root-secreted nucleosides: signaling chemoattractants of rhizosphere bacteria.	Keren G, Yehezkel G, Satish L, Adamov Z, Barak Z, Ben-Shabat S, Kagan-Zur V, Sitrit Y.	Front Plant Sci	10.3389/fpls.2024.1388384	2024
	Enhancing Pisum sativum growth and symbiosis under heat stress: the synergistic impact of co-inoculated bacterial consortia and ACC deaminase-lacking Rhizobium.	Ben Gaied R, Sbissi I, Tarhouni M, Brigido C.	Arch Microbiol	10.1007/s00203-024-03943-3	2024
	Mucilage produced by aerial roots hosts diazotrophs that provide nitrogen in Sorghum bicolor.	Venado RE, Wilker J, Pankievicz VCS, Infante V, MacIntyre A, Wolf ESA, Vela S, Robbins F, Fernandes-Junior PI, Vermerris W, Ane JM.	PLoS Biol	10.1371/journal.pbio.3003037	2025
	Comparison of Atmospheric and Lithospheric Culturable Bacterial Communities from Two Dissimilar Active Volcanic Sites, Surtsey Island and Fimmvörðuháls Mountain in Iceland.	Daussin A, Vannier P, Menager M, Daboussy L, Santl-Temkiv T, Cockell C, Marteinsson VTh.	Microorganisms	10.3390/microorganisms11030665	2023
Phylogeny	Pseudomonas turukhanskensis sp. nov., isolated from oil-contaminated soils.	Korshunova TY, Ramirez-Bahena MH, Chetverikov SP, Igual JM, Peix A, Loginov O	Int J Syst Evol Microbiol	10.1099/ijsem.0.001406	2016

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#25018	T. Y. R.-B. Korshunova, M. H.,Chetverikov, S. P.,Igual, J. M.,Peix, A.,Loginov, O.: Pseudomonas turukhanskensis sp. nov., isolated from oil-contaminated soils. IJSEM 66: 4657 - 4664 2016 ( DOI 10.1099/ijsem.0.001406 , PubMed 27503709 )
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Pseudomonas turukhanskensis (IB1.1, VKM B-2935, CECT 9091)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_027922365

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

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