Name: Pseudomonas turukhanskensis IB1.1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133231

Type strain:

Species: Pseudomonas turukhanskensis

Strain Designation: IB1.1

Culture col. no.: VKM B-2935, CECT 9091

NCBI tax ID(s): 1806536 (species)

Section

Pseudomonas turukhanskensis IB1.1 is an aerobe, Gram-negative, motile bacterium that forms circular colonies and was isolated from oil-contaminated soil.

colony-forming
Gram-negative
motile
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Pseudomonadales*
	Family	*Pseudomonadaceae*
	Genus	*Pseudomonas*
	Species	**Pseudomonas turukhanskensis**
	Full Scientific Name (LPSN)	Pseudomonas turukhanskensis Korshunova et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #25018]	Gram stain	negative

[Ref.: #25018]	Cell shape	rod-shaped

[Ref.: #25018]	Motility	yes

[Ref.: #25018]	Flagellum arrangement	polar

[Ref.: #25018]	Colony size	2.5-3.3 mm
[Ref.: #25018]	Colony color	beige
[Ref.: #25018]	Colony shape	circular
[Ref.: #25018]	Incubation period	3 days
[Ref.: #25018]	Cultivation medium used	nutrient agar

[Ref.: #25018]	Pigment production	yes
[Ref.: #25018]	Pigment name	fluorescent pigment on King B medium

Information on culture and growth conditions Culture and growth conditions

[Ref.: #25018]

Culture medium

Nutrient agar (NA)

[Ref.: #25018]

Culture medium growth

	Temperatures	Kind of temperature		Temperature
[Ref.: #25018]			growth	0-34 °C

	pH	Kind of pH		pH
[Ref.: #25018]			growth	6.0-8.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #25018]

Oxygen tolerance

aerobe

[Ref.: #25018]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #25018]		NaCl	no	growth	5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #25018]	2,3-butanediol ChEBI	-	respiration
[Ref.: #25018]	2-hydroxybutyrate ChEBI	-	respiration
[Ref.: #25018]	2-oxobutanoate ChEBI	-	respiration
[Ref.: #25018]	2-oxopentanoate ChEBI	-	respiration
[Ref.: #25018]	4-hydroxyphenylacetic acid ChEBI	+	assimilation
[Ref.: #25018]	acetate ChEBI	+	respiration
[Ref.: #25018]	adipate ChEBI	+	assimilation
[Ref.: #25018]	alpha-cyclodextrin ChEBI	-	respiration
[Ref.: #25018]	alpha-D-glucose ChEBI	+	respiration
[Ref.: #25018]	alpha-lactose ChEBI	-	respiration
[Ref.: #25018]	beta-hydroxybutyrate ChEBI	+	respiration
[Ref.: #25018]	bromosuccinate ChEBI	+	respiration
[Ref.: #25018]	carnitine ChEBI	+	respiration
[Ref.: #25018]	cellobiose ChEBI	+	assimilation
[Ref.: #25018]	cis-aconitate ChEBI	+	respiration
[Ref.: #25018]	citrate ChEBI	-	assimilation
[Ref.: #25018]	citrate ChEBI	+	respiration
[Ref.: #25018]	D-alanine ChEBI	+	respiration
[Ref.: #25018]	D-arabitol ChEBI	+	assimilation
[Ref.: #25018]	D-fructose ChEBI	+	respiration
[Ref.: #25018]	D-galactonic acid lactone ChEBI	+	assimilation
[Ref.: #25018]	D-galactose ChEBI	-	respiration
[Ref.: #25018]	D-galacturonic acid ChEBI	+	respiration
[Ref.: #25018]	D-glucarate ChEBI	+	respiration
[Ref.: #25018]	D-gluconate ChEBI	+	respiration
[Ref.: #25018]	D-glucosamine ChEBI	+	respiration
[Ref.: #25018]	D-glucose 6-phosphate ChEBI	-	respiration
[Ref.: #25018]	D-glucuronate ChEBI	+	respiration
[Ref.: #25018]	D-mannitol ChEBI	+	respiration
[Ref.: #25018]	D-mannose ChEBI	+	respiration
[Ref.: #25018]	D-psicose ChEBI	-	respiration
[Ref.: #25018]	D-serine ChEBI	-	respiration
[Ref.: #25018]	D-sorbitol ChEBI	+	respiration
[Ref.: #25018]	D-threonine ChEBI	-	respiration
[Ref.: #25018]	decanoate ChEBI	+	assimilation
[Ref.: #25018]	dextrin ChEBI	-	respiration
[Ref.: #25018]	erythritol ChEBI	-	respiration
[Ref.: #25018]	esculin ChEBI	-	hydrolysis
[Ref.: #25018]	ethanolamine ChEBI	-	respiration
[Ref.: #25018]	formate ChEBI	-	respiration
[Ref.: #25018]	gamma-aminobutyric acid ChEBI	+	respiration
[Ref.: #25018]	gentiobiose ChEBI	+	assimilation
[Ref.: #25018]	gluconate ChEBI	-	assimilation
[Ref.: #25018]	glucose ChEBI	+	assimilation
[Ref.: #25018]	glucose 1-phosphate ChEBI	+	assimilation
[Ref.: #25018]	glucuronamide ChEBI	-	respiration
[Ref.: #25018]	glycerol ChEBI	-	respiration
[Ref.: #25018]	glycerol 1-phosphate ChEBI	+	assimilation
[Ref.: #25018]	glycogen ChEBI	-	respiration
[Ref.: #25018]	glycyl L-aspartic acid ChEBI	-	respiration
[Ref.: #25018]	glycyl-l-glutamate ChEBI	+	respiration
[Ref.: #25018]	hydroxyproline ChEBI	+	assimilation
[Ref.: #25018]	inosine ChEBI	-	respiration
[Ref.: #25018]	itaconate ChEBI	-	respiration
[Ref.: #25018]	L-alaninamide ChEBI	+	respiration
[Ref.: #25018]	L-alanine ChEBI	+	respiration
[Ref.: #25018]	L-alanylglycine ChEBI	+	respiration
[Ref.: #25018]	L-arabinose ChEBI	-	respiration
[Ref.: #25018]	L-asparagine ChEBI	+	respiration
[Ref.: #25018]	L-aspartate ChEBI	+	respiration
[Ref.: #25018]	L-fucose ChEBI	-	respiration
[Ref.: #25018]	L-glutamate ChEBI	+	respiration
[Ref.: #25018]	L-histidine ChEBI	+	respiration
[Ref.: #25018]	L-leucine ChEBI	+	assimilation
[Ref.: #25018]	L-ornithine ChEBI	-	respiration
[Ref.: #25018]	L-phenylalanine ChEBI	-	respiration
[Ref.: #25018]	L-proline ChEBI	+	respiration
[Ref.: #25018]	L-pyroglutamic acid ChEBI	+	assimilation
[Ref.: #25018]	L-rhamnose ChEBI	-	respiration
[Ref.: #25018]	L-serine ChEBI	+	assimilation
[Ref.: #25018]	lactulose ChEBI	-	respiration
[Ref.: #25018]	malate ChEBI	+	assimilation
[Ref.: #25018]	maltose ChEBI	-	assimilation
[Ref.: #25018]	maltose ChEBI	-	respiration
[Ref.: #25018]	mannitol ChEBI	+	assimilation
[Ref.: #25018]	mannose ChEBI	+	assimilation
[Ref.: #25018]	melibiose ChEBI	-	respiration
[Ref.: #25018]	methyl beta-D-glucopyranoside ChEBI	-	respiration
[Ref.: #25018]	methyl pyruvate ChEBI	+	respiration
[Ref.: #25018]	monomethyl succinate ChEBI	+	respiration
[Ref.: #25018]	myo-inositol ChEBI	-	respiration
[Ref.: #25018]	N-acetylgalactosamine ChEBI	-	respiration
[Ref.: #25018]	N-acetylglucosamine ChEBI	-	assimilation
[Ref.: #25018]	N-acetylglucosamine ChEBI	-	respiration
[Ref.: #25018]	nitrate ChEBI	-	reduction
[Ref.: #25018]	phenylacetate ChEBI	-	assimilation
[Ref.: #25018]	phenylethylamine ChEBI	-	respiration
[Ref.: #25018]	propionate ChEBI	+	assimilation
[Ref.: #25018]	putrescine ChEBI	+	respiration
[Ref.: #25018]	raffinose ChEBI	-	respiration
[Ref.: #25018]	ribitol ChEBI	-	respiration
[Ref.: #25018]	sebacic acid ChEBI	-	respiration
[Ref.: #25018]	sodium malonate ChEBI	-	respiration
[Ref.: #25018]	succinamate ChEBI	-	respiration
[Ref.: #25018]	succinate ChEBI	+	respiration
[Ref.: #25018]	sucrose ChEBI	+	respiration
[Ref.: #25018]	thymidine ChEBI	-	respiration
[Ref.: #25018]	trehalose ChEBI	+	respiration
[Ref.: #25018]	tryptophan ChEBI	-	energy source
[Ref.: #25018]	turanose ChEBI	-	respiration
[Ref.: #25018]	tween 40 ChEBI	+	respiration
[Ref.: #25018]	tween 80 ChEBI	+	respiration
[Ref.: #25018]	uridine ChEBI	-	respiration
[Ref.: #25018]	urocanic acid ChEBI	+	respiration
[Ref.: #25018]	xylitol ChEBI	-	respiration
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #25018]		indole ChEBI	no

	Physiological tests	Metabolite	Indole test
[Ref.: #25018]		indole ChEBI	-

	Enzyme	Enzyme activity	EC number
[Ref.: #25018]	arginine dihydrolase	-	3.5.3.6
[Ref.: #25018]	beta-galactosidase	-	3.2.1.23
[Ref.: #25018]	catalase	+	1.11.1.6
[Ref.: #25018]	cytochrome oxidase	+	1.9.3.1
[Ref.: #25018]	tryptophan deaminase	-	4.1.99.1
[Ref.: #25018]	urease	-	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #25018]	Sample type/isolated from	oil-contaminated soil
[Ref.: #25018]	Geographic location (country and/or sea, region)	Turukhansk District, East Siberia
[Ref.: #25018]	Country	Russia
[Ref.: #25018]	Country ISO 3 Code	RUS
[Ref.: #25018]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Contamination	#Oil (Fuel)
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KP306892 (>99% sequence identity) for Pseudomonas from Microbeatlas

Aquatic Samples	21
Soil Samples	18
Animal Samples	14
Plant Samples	18
Total Samples	71

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #25018]	16S rRNA	KP306892		GenBank

[Ref.: #25018]

GC-content

58.5 mol%

Thermal denaturation, fluorometry

Availability in culture collections External links

[Ref.: #25018]

Culture collection no.

VKM B-2935, CECT 9091

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pseudomonas turukhanskensis sp. nov., isolated from oil-contaminated soils.	Korshunova TY, Ramirez-Bahena MH, Chetverikov SP, Igual JM, Peix A, Loginov O	Int J Syst Evol Microbiol	10.1099/ijsem.0.001406	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#25018

T. Y. R.-B. Korshunova, M. H.,Chetverikov, S. P.,Igual, J. M.,Peix, A.,Loginov, O.: Pseudomonas turukhanskensis sp. nov., isolated from oil-contaminated soils. IJSEM 66: 4657 - 4664 2016 ( DOI 10.1099/ijsem.0.001406 , PubMed 27503709 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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