Name: Sporolactobacillus pectinivorans GD201205
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133204

Type strain:

Species: Sporolactobacillus pectinivorans

Strain Designation: GD201205

Culture col. no.: CICC 23867, KCTC 15488

Strain history: <- Jing Chen, Food Testing Institute, Shenzhen Academy of Metrology & Quality Inspection, China

NCBI tax ID(s): 1591408 (species)

Section

Sporolactobacillus pectinivorans GD201205 is a facultative anaerobe, spore-forming, Gram-positive bacterium that forms circular colonies and was isolated from spoiled jelly.

colony-forming
Gram-positive
rod-shaped
spore-forming
facultative anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Sporolactobacillaceae*
	Genus	*Sporolactobacillus*
	Species	**Sporolactobacillus pectinivorans**
	Full Scientific Name (LPSN)	Sporolactobacillus pectinivorans Lan et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #25019]	Gram stain	positive
[Ref.: #67771]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #25019]	Cell length	1.2-1.6 µm

[Ref.: #25019]	Cell width	0.8-1.0 µm

[Ref.: #25019]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #69480]	Motility	yes Confidence in %90.716

[Ref.: #25019]	Colony shape	circular
[Ref.: #25019]	Incubation period	7 days
[Ref.: #25019]	Cultivation medium used	GYP agar medium

Information on culture and growth conditions Culture and growth conditions

[Ref.: #25019]

Culture medium

GYP agar medium

[Ref.: #25019]

Culture medium growth

	Kind of temperature		Temperature
[Ref.: #25019]		growth	20-40 °C
[Ref.: #25019]		optimum	37 °C
[Ref.: #25019]	no	growth	15 °C
[Ref.: #25019]	no	growth	45-50 °C
[Ref.: #67771]		growth	37 °C

[Ref.: #25019]	Temperature range	mesophilic
[Ref.: #25019]	Temperature range	psychrophilic
[Ref.: #25019]	Temperature range	thermophilic
[Ref.: #67771]	Temperature range	mesophilic

	Kind of pH		pH
[Ref.: #25019]		optimum	6
[Ref.: #25019]		growth	4.0-7.0
[Ref.: #25019]	no	growth	3
[Ref.: #25019]	no	growth	8.0-10.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #25019]	Oxygen tolerance	facultative anaerobe
[Ref.: #67771]	Oxygen tolerance	anaerobe

[Ref.: #25019]	Spore description	subterminal with swollen sporangia
[Ref.: #25019]	Type of spore	endospore
[Ref.: #25019]	Ability of spore formation	yes
[Ref.: #67771]	Type of spore	endospore
[Ref.: #67771]	Ability of spore formation	yes
[Ref.: #69481]	Ability of spore formation	yes Confidence in %95
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #25019]		NaCl		growth	1.0-2.0	%(w/v)
[Ref.: #25019]		NaCl	no	growth	3.0-10.0	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #25019]	2-dehydro-D-gluconate ChEBI	-	builds acid from
[Ref.: #25019]	5-dehydro-D-gluconate ChEBI	-	builds acid from
[Ref.: #25019]	amygdalin ChEBI	-	builds acid from
[Ref.: #25019]	arbutin ChEBI	-	builds acid from
[Ref.: #25019]	cellobiose ChEBI	-	builds acid from
[Ref.: #25019]	D-arabinose ChEBI	-	builds acid from
[Ref.: #25019]	D-arabitol ChEBI	-	builds acid from
[Ref.: #25019]	D-fructose ChEBI	+	builds acid from
[Ref.: #25019]	D-fucose ChEBI	-	builds acid from
[Ref.: #25019]	D-galactose ChEBI	-	builds acid from
[Ref.: #25019]	D-glucose ChEBI	+	builds acid from
[Ref.: #25019]	D-lyxose ChEBI	-	builds acid from
[Ref.: #25019]	D-mannitol ChEBI	-	builds acid from
[Ref.: #25019]	D-mannose ChEBI	+	builds acid from
[Ref.: #25019]	D-ribose ChEBI	-	builds acid from
[Ref.: #25019]	D-sorbitol ChEBI	-	builds acid from
[Ref.: #25019]	D-tagatose ChEBI	-	builds acid from
[Ref.: #25019]	D-xylose ChEBI	-	builds acid from
[Ref.: #25019]	erythritol ChEBI	-	builds acid from
[Ref.: #25019]	esculin ChEBI	-	builds acid from
[Ref.: #25019]	galactitol ChEBI	-	builds acid from
[Ref.: #25019]	gentiobiose ChEBI	-	builds acid from
[Ref.: #25019]	glycerol ChEBI	-	builds acid from
[Ref.: #25019]	glycogen ChEBI	-	builds acid from
[Ref.: #25019]	inulin ChEBI	-	builds acid from
[Ref.: #25019]	L-arabinose ChEBI	-	builds acid from
[Ref.: #25019]	L-arabitol ChEBI	-	builds acid from
[Ref.: #25019]	L-fucose ChEBI	-	builds acid from
[Ref.: #25019]	L-rhamnose ChEBI	-	builds acid from
[Ref.: #25019]	L-sorbose ChEBI	-	builds acid from
[Ref.: #25019]	L-xylose ChEBI	-	builds acid from
[Ref.: #25019]	lactose ChEBI	-	builds acid from
[Ref.: #25019]	maltose ChEBI	-	builds acid from
[Ref.: #25019]	melezitose ChEBI	-	builds acid from
[Ref.: #25019]	melibiose ChEBI	-	builds acid from
[Ref.: #25019]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from
[Ref.: #25019]	methyl alpha-D-mannoside ChEBI	-	builds acid from
[Ref.: #25019]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from
[Ref.: #25019]	myo-inositol ChEBI	-	builds acid from
[Ref.: #25019]	N-acetylglucosamine ChEBI	-	builds acid from
[Ref.: #25019]	nitrate ChEBI	-	reduction
[Ref.: #25019]	potassium gluconate ChEBI	-	builds acid from
[Ref.: #25019]	raffinose ChEBI	-	builds acid from
[Ref.: #25019]	raffinose ChEBI	+	builds acid from
[Ref.: #25019]	ribitol ChEBI	-	builds acid from
[Ref.: #25019]	salicin ChEBI	-	builds acid from
[Ref.: #25019]	sorbitol ChEBI	-	builds acid from
[Ref.: #25019]	sorbose ChEBI	-	builds acid from
[Ref.: #25019]	starch ChEBI	-	builds acid from
[Ref.: #25019]	sucrose ChEBI	-	builds acid from
[Ref.: #25019]	sucrose ChEBI	+	builds acid from
[Ref.: #25019]	trehalose ChEBI	-	builds acid from
[Ref.: #25019]	turanose ChEBI	-	builds acid from
[Ref.: #25019]	turanose ChEBI	+	builds acid from
[Ref.: #25019]	xylitol ChEBI	-	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #25019]	amylase	-
[Ref.: #25019]	catalase	-	1.11.1.6
[Ref.: #25019]	cytochrome oxidase	-	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #25019]	Sample type/isolated from	spoiled jelly
[Ref.: #25019]	Country	China
[Ref.: #25019]	Country ISO 3 Code	CHN
[Ref.: #25019]	Continent	Asia
[Ref.: #25019]	Enrichment culture	GYP broth
[Ref.: #25019]	Enrichment culture composition	2% glucose (Difo),1 % yeast extract (Difo), 2 % polypepton (Difo), 0.1 % KH2PO4 and 0.05% MgSO4.7H2O
[Ref.: #25019]	Enrichment culture duration	7 days
[Ref.: #25019]	Enrichment culture temperature	37 ̊C
[Ref.: #25019]	Isolation/enrichment procedure	methods of Thamacharoensuk et al. (2015)

[Ref.: #67771]	Sample type/isolated from	From spoiled jelly
[Ref.: #67771]	Country	China
[Ref.: #67771]	Country ISO 3 Code	CHN
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Food production	#Sugary food
#Environmental	#Microbial community	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KP340805 (>99% sequence identity) for Sporolactobacillus pectinivorans subclade from Microbeatlas

Aquatic Samples	8
Soil Samples	8
Animal Samples	37
Plant Samples	4
Total Samples	57

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #25019]	16S rRNA	KP340805		GenBank

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Sporolactobacillus pectinivorans GD201205	GCA_002802965	scaffold	GenBank	1591408 tax ID	*
[Ref.: #66792]	Sporolactobacillus pectinivorans GD201205	2791354945	draft	JGI IMG/M	1591408 tax ID	*

[Ref.: #25019]	GC-content	48.7 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67771]	GC-content	48.7 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Sporolactobacillus pectinivorans GD201205 NCBI: GCA_002802965.1
[Ref.: #69481]	spore-forming	yes	95	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Sporolactobacillus pectinivorans GD201205 NCBI: GCA_002802965.1
[Ref.: #69480]	flagellated	yes	72.199	no
[Ref.: #69480]	gram-positive	yes	83.444	no
[Ref.: #69480]	anaerobic	no	92.795	no
[Ref.: #69480]	halophile	no	68.674	no
[Ref.: #69480]	spore-forming	yes	94.379	yes
[Ref.: #69480]	glucose-util	yes	86.751	no
[Ref.: #69480]	aerobic	no	89.957	yes
[Ref.: #69480]	thermophile	no	99.102	no
[Ref.: #69480]	motile	yes	83.911	no
[Ref.: #69480]	glucose-ferment	no	61.993	no

Availability in culture collections External links

[Ref.: #25019]

Culture collection no.

CICC 23867, KCTC 15488

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Sporolactobacillus pectinivorans sp. nov., an anaerobic bacterium isolated from spoiled jelly.	Lan QX, Chen J, Lin L, Ye XL, Yan QY, Huang JF, Liu CC, Yang GW	Int J Syst Evol Microbiol	10.1099/ijsem.0.001351	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#25019

Q. X. C. Lan, J.,Lin, L.,Ye, X. L.,Yan, Q. Y.,Huang, J. F.,Liu, C. C.,Yang, G. W.: Sporolactobacillus pectinivorans sp. nov., an anaerobic bacterium isolated from spoiled jelly. IJSEM 66: 4323 - 4328 2016 ( DOI 10.1099/ijsem.0.001351 , PubMed 27516092 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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