Name: Streptococcus marmotae HTS5
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 133203

Type strain:

Species: Streptococcus marmotae

Strain Designation: HTS5

Culture col. no.: DSM 101995, CGMCC 1.15534

Strain history: <- L. Niu, Nat. Inst. for Communicable Disease Control and Prevention, Beijing, China; HTS5

NCBI tax ID(s): 1825069 (species)

SI-ID 405906

DSM 101995

Special Collections

Section

Streptococcus marmotae HTS5 is a facultative anaerobe, Gram-positive, coccus-shaped bacterium that forms circular colonies and was isolated from respiratory tract of a wild marmot Marmota himalayana.

coccus-shaped
colony-forming
Gram-positive
facultative anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Lactobacillales*
	Family	*Streptococcaceae*
	Genus	*Streptococcus*
	Species	**Streptococcus marmotae**
	Full Scientific Name (LPSN)	Streptococcus marmotae Niu et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #25002]	Gram stain	positive

[Ref.: #25002]	Cell length	0.5-1.0 µm

[Ref.: #25002]	Cell shape	coccus-shaped

[Ref.: #25002]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %92.479

[Ref.: #25002]	Type of hemolysis	alpha
[Ref.: #25002]	Hemolysis ability	1
[Ref.: #25002]	Colony size	0.5-1.0 mm
[Ref.: #25002]	Colony shape	circular
[Ref.: #25002]	Incubation period	1 day
[Ref.: #25002]	Cultivation medium used	Columbia blood agar

[Ref.: #25002]	Pigment production	no
[Ref.: #25002]	Pigment name	no pigments

Information on culture and growth conditions Culture and growth conditions

[Ref.: #25002]

Culture medium

Columbia blood agar

[Ref.: #25002]

Culture medium growth

[Ref.: #64138]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #64138]

Culture medium growth

[Ref.: #64138]

Culture medium link

Medium recipe at MediaDive

[Ref.: #64138]

Culture medium composition

expand / minimize

	Kind of temperature		Temperature
[Ref.: #25002]		growth	22-42 °C
[Ref.: #25002]	no	growth	4-15 °C
[Ref.: #64138]		growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #25002]

Oxygen tolerance

facultative anaerobe

[Ref.: #25002]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #25002]		NaCl		maximum	2.5	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #25002]	2-dehydro-D-gluconate ChEBI	-	builds acid from
[Ref.: #25002]	5-dehydro-D-gluconate ChEBI	+	builds acid from
[Ref.: #25002]	amygdalin ChEBI	+	builds acid from
[Ref.: #25002]	arbutin ChEBI	+	builds acid from
[Ref.: #25002]	arginine ChEBI	-	hydrolysis
[Ref.: #25002]	cellobiose ChEBI	+	builds acid from
[Ref.: #25002]	cyclodextrin ChEBI	-	builds acid from
[Ref.: #25002]	D-arabinose ChEBI	-	builds acid from
[Ref.: #25002]	D-arabitol ChEBI	-	builds acid from
[Ref.: #25002]	D-fructose ChEBI	+	builds acid from
[Ref.: #25002]	D-fucose ChEBI	-	builds acid from
[Ref.: #25002]	D-galactose ChEBI	+	builds acid from
[Ref.: #25002]	D-glucose ChEBI	+	builds acid from
[Ref.: #25002]	D-lyxose ChEBI	-	builds acid from
[Ref.: #25002]	D-mannitol ChEBI	-	builds acid from
[Ref.: #25002]	D-mannose ChEBI	+	builds acid from
[Ref.: #25002]	D-ribose ChEBI	-	builds acid from
[Ref.: #25002]	D-xylose ChEBI	+	builds acid from
[Ref.: #25002]	erythritol ChEBI	+	builds acid from
[Ref.: #25002]	esculin ChEBI	+	builds acid from
[Ref.: #25002]	galactitol ChEBI	-	builds acid from
[Ref.: #25002]	gentiobiose ChEBI	+	builds acid from
[Ref.: #25002]	glycerol ChEBI	+	builds acid from
[Ref.: #25002]	glycogen ChEBI	+	builds acid from
[Ref.: #25002]	hippurate ChEBI	-	hydrolysis
[Ref.: #25002]	inulin ChEBI	-	builds acid from
[Ref.: #25002]	L-arabinose ChEBI	-	builds acid from
[Ref.: #25002]	L-arabitol ChEBI	-	builds acid from
[Ref.: #25002]	L-fucose ChEBI	-	builds acid from
[Ref.: #25002]	L-rhamnose ChEBI	-	builds acid from
[Ref.: #25002]	L-sorbose ChEBI	-	builds acid from
[Ref.: #25002]	L-xylose ChEBI	-	builds acid from
[Ref.: #25002]	lactose ChEBI	+	builds acid from
[Ref.: #25002]	maltose ChEBI	+	builds acid from
[Ref.: #25002]	melezitose ChEBI	-	builds acid from
[Ref.: #25002]	melibiose ChEBI	+	builds acid from
[Ref.: #25002]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from
[Ref.: #25002]	methyl alpha-D-mannoside ChEBI	-	builds acid from
[Ref.: #25002]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from
[Ref.: #25002]	myo-inositol ChEBI	-	builds acid from
[Ref.: #25002]	N-acetylgalactosamine ChEBI	+	builds acid from
[Ref.: #25002]	pullulan ChEBI	-	builds acid from
[Ref.: #25002]	raffinose ChEBI	+	builds acid from
[Ref.: #25002]	ribitol ChEBI	-	builds acid from
[Ref.: #25002]	salicin ChEBI	+	builds acid from
[Ref.: #25002]	sorbitol ChEBI	-	builds acid from
[Ref.: #25002]	starch ChEBI	-	builds acid from
[Ref.: #25002]	sucrose ChEBI	+	builds acid from
[Ref.: #25002]	tagatose ChEBI	-	builds acid from
[Ref.: #25002]	trehalose ChEBI	-	builds acid from
[Ref.: #25002]	turanose ChEBI	-	builds acid from
[Ref.: #25002]	urea ChEBI	-	hydrolysis
[Ref.: #25002]	xylitol ChEBI	-	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #25002]		acetoin ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #25002]		acetoin ChEBI	-

	Enzyme	Enzyme activity	EC number
[Ref.: #25002]	6-phospho-beta-galactosidase	+	3.2.1.85
[Ref.: #25002]	acid phosphatase	-	3.1.3.2
[Ref.: #25002]	alkaline phosphatase	-	3.1.3.1
[Ref.: #25002]	alpha-chymotrypsin	+	3.4.21.1
[Ref.: #25002]	alpha-fucosidase	-	3.2.1.51
[Ref.: #25002]	alpha-galactosidase	+	3.2.1.22
[Ref.: #25002]	alpha-glucosidase	-	3.2.1.20
[Ref.: #25002]	alpha-mannosidase	-	3.2.1.24
[Ref.: #25002]	beta-glucosidase	+	3.2.1.21
[Ref.: #25002]	beta-glucuronidase	+	3.2.1.31
[Ref.: #25002]	beta-mannosidase	-	3.2.1.25
[Ref.: #25002]	catalase	-	1.11.1.6
[Ref.: #25002]	cystine arylamidase	-	3.4.11.3
[Ref.: #25002]	esterase (C 4)	+
[Ref.: #25002]	esterase lipase (C 8)	-
[Ref.: #25002]	glycyl tryptophan arylamidase	-
[Ref.: #25002]	leucine arylamidase	+	3.4.11.1
[Ref.: #25002]	lipase (C 14)	-
[Ref.: #25002]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #25002]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #25002]	phenylalanine arylamidase
[Ref.: #25002]	pyroglutamic acid arylamidase	-
[Ref.: #25002]	trypsin	-	3.4.21.4
[Ref.: #25002]	valine arylamidase	-
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #25002]	Sample type/isolated from	respiratory tract of a wild marmot Marmota himalayana
[Ref.: #25002]	Geographic location (country and/or sea, region)	Yushu, Tibetan autonomous Prefecture, Qinghai province
[Ref.: #25002]	Country	China
[Ref.: #25002]	Country ISO 3 Code	CHN
[Ref.: #25002]	Continent	Asia

[Ref.: #64138]	Sample type/isolated from	respiratory tract of wild marmot (Marmota himalayana)
[Ref.: #64138]	Geographic location (country and/or sea, region)	Qinghai province, Tibetan autonomous Prefecture, Yushu (33° 21' N 96° 62' E, altitude 3599.6 m)
[Ref.: #64138]	Country	China
[Ref.: #64138]	Country ISO 3 Code	CHN
[Ref.: #64138]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Mammals	#Rodentia (Other)
#Host Body-Site	#Oral cavity and airways	#Airways

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #64138]	Streptococcus marmotae strain HTS5 16S ribosomal RNA gene, partial sequence	KU992301	1510	GenBank ENA	1825069 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Streptococcus marmotae HTS5	GCA_001623565	complete	GenBank ENA	1825069 tax ID	*
[Ref.: #66792]	Streptococcus marmotae HTS5	2687453179	complete	JGI IMG/M	1825069 tax ID	*

[Ref.: #25002]	GC-content	41.6 mol%
[Ref.: #64138]	GC-content	41.6 mol%	sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptococcus marmotae HTS5 NCBI: GCA_001623565.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptococcus marmotae HTS5 NCBI: GCA_001623565.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	86.392	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	91.912	yes
[Ref.: #69480]	aerobic	aerobicⓘ	no	96.114	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	84.748	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	95	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	92.479	yes

Availability in culture collections External links

[Ref.: #64138]

Culture collection no.

DSM 101995, CGMCC 1.15534

[Ref.: #91391]

SI-ID 405906

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptococcus himalayensis sp. nov., isolated from the respiratory tract of Marmota himalayana.	Niu L, Lu S, Lai XH, Hu S, Chen C, Zhang G, Yang J, Jin D, Wang Y, Lan R, Lu G, Xie Y, Ye C, Xu J	Int J Syst Evol Microbiol	10.1099/ijsem.0.001609	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#25002

L. L. Niu, Shan,Hu, Shoukui,Jin, Dong,Lai, Xinhe,Yang, Jing,Chen, Cuixia,Wang, Yi,Wang, Yiting,Bai, Xiangning,Lan, Ruiting,Lv, Gang,Xie, Yingping,Ye, Changyun,Xu, Jianguo: Streptococcus marmotae sp. nov., isolated from the respiratory tract of Marmota himalayana. IJSEM 66: 4315 - 4322 2016 ( DOI 10.1099/ijsem.0.001350 , PubMed 27473166 )

#64138

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 101995

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#91391

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID405906.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Streptococcus marmotae in external resources:
SILVA
BRENDA
PANGAEA
GBIF