Polaribacter marinaquae (RZW3-2, JCM 30825, KCTC 42664)

Name: Polaribacter marinaquae (RZW3-2, JCM 30825, KCTC 42664)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 133198

Type strain

Strain Designation RZW3-2

Culture col. no. RZW3-2 JCM 30825 KCTC 42664 MCCC 1K00696

NCBI tax ID(s) 1642819

Special Collections JCM KCTC Literature strains

Links

Polaribacter marinaquae RZW3-2 is an obligate aerobe, Gram-negative, rod-shaped prokaryote that forms circular colonies and was isolated from surface seawater.

Gram-negative rod-shaped colony-forming obligate aerobe genome sequence 16S sequence

Name and taxonomic classification

SI-ID 27337

KCTC 42664,JCM 30825

@ref 20215

Last LPSN update 2025-12-16 10:01:42

Domain Pseudomonadati

Phylum Bacteroidota

Class Flavobacteriia

Order Flavobacteriales

Family Flavobacteriaceae

Genus Polaribacter

Species Polaribacter marinaquae

Full scientific name Polaribacter marinaquae Wang et al. 2016

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape
24996	negative	1.5-2.7 µm	0.4-0.5 µm	rod-shaped
67771				rod-shaped
67771	negative

Colony morphology

@ref	Colony size	Colony color	Colony shape	Incubation period	Medium used
24996	1.5-2.0 mm	yellow	circular	2 days	MA (marine agar)

Culture and growth conditions

Culture medium

@ref	Name	Growth
24996	Marine agar (MA)

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
24996	positive	growth	4.0-32.0
24996	positive	optimum	24.0-28.0
24996	negative	growth	0
24996	positive	growth	16	psychrophilic
67770	positive	growth	30	mesophilic
67771	positive	growth	28	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
24996	positive	optimum	6.0-7.0
24996	positive	growth	5.0-10.0	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
24996	obligate aerobe
67771	aerobe

Spore formation

24996

Spore formationno

Observation

@ref	Observation
67770	quinones: MK-6
67771	quinones: MK-6

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
24996	16763 ChEBI	2-oxobutanoate	+	respiration
24996	30916 ChEBI	2-oxoglutarate	-	respiration
24996	28644 ChEBI	2-oxopentanoate	-	respiration
24996	18240 ChEBI	4-hydroxy-L-proline	+	respiration
24996	58143 ChEBI	5-dehydro-D-gluconate	+	builds acid from
24996	30089 ChEBI	acetate	+	carbon source
24996	30089 ChEBI	acetate	+	respiration
24996	2509 ChEBI	agar	-	hydrolysis
24996	16449 ChEBI	alanine	-	carbon source
24996	58187 ChEBI	alginate	+	carbon source
24996	40585 ChEBI	alpha-cyclodextrin	+	respiration
24996	17925 ChEBI	alpha-D-glucose	+	respiration
24996	36219 ChEBI	alpha-lactose	-	respiration
24996	16150 ChEBI	benzoate	-	carbon source
24996	73706 ChEBI	bromosuccinate	+	respiration
24996	17126 ChEBI	carnitine	-	respiration
24996		casein	-	hydrolysis
24996	17057 ChEBI	cellobiose	-	carbon source
24996	17057 ChEBI	cellobiose	-	respiration
24996	17029 ChEBI	chitin	-	hydrolysis
24996	16947 ChEBI	citrate	-	carbon source
24996	16947 ChEBI	citrate	-	respiration
24996	15824 ChEBI	D-fructose	-	respiration
24996	12936 ChEBI	D-galactose	-	carbon source
24996	12936 ChEBI	D-galactose	+	respiration
24996	14314 ChEBI	D-glucose 6-phosphate	-	respiration
24996	15748 ChEBI	D-glucuronate	+	respiration
24996	16899 ChEBI	D-mannitol	+	respiration
24996	16024 ChEBI	D-mannose	-	carbon source
24996	16024 ChEBI	D-mannose	-	respiration
24996	65327 ChEBI	D-xylose	-	carbon source
24996	23652 ChEBI	dextrin	+	respiration
24996	16991 ChEBI	dna	+	hydrolysis
24996	4853 ChEBI	esculin	+/-	hydrolysis
24996	28757 ChEBI	fructose	-	carbon source
24996	5291 ChEBI	gelatin	+	hydrolysis
24996	28066 ChEBI	gentiobiose	-	respiration
24996	29042 ChEBI	glucose 1-phosphate	-	respiration
24996	17754 ChEBI	glycerol	-	builds acid from
24996	17754 ChEBI	glycerol	-	carbon source
24996	14336 ChEBI	glycerol 1-phosphate	+	respiration
24996	28087 ChEBI	glycogen	-	respiration
24996	73804 ChEBI	glycyl L-aspartic acid	+	respiration
24996	17596 ChEBI	inosine	-	respiration
24996	21217 ChEBI	L-alaninamide	-	respiration
24996	16977 ChEBI	L-alanine	-	respiration
24996	73786 ChEBI	L-alanylglycine	+	respiration
24996	17196 ChEBI	L-asparagine	-	respiration
24996	29991 ChEBI	L-aspartate	+	respiration
24996	29985 ChEBI	L-glutamate	-	carbon source
24996	29985 ChEBI	L-glutamate	+	respiration
24996	15971 ChEBI	L-histidine	-	carbon source
24996	15603 ChEBI	L-leucine	-	carbon source
24996	15603 ChEBI	L-leucine	-	respiration
24996	15729 ChEBI	L-ornithine	+	respiration
24996	17295 ChEBI	L-phenylalanine	-	carbon source
24996	17295 ChEBI	L-phenylalanine	-	respiration
24996	17203 ChEBI	L-proline	+	respiration
24996	18183 ChEBI	L-pyroglutamic acid	-	respiration
24996	17115 ChEBI	L-serine	+	respiration
24996	16857 ChEBI	L-threonine	+	respiration
24996	24996 ChEBI	lactate	+	respiration
24996	17716 ChEBI	lactose	-	builds acid from
24996	17716 ChEBI	lactose	-	carbon source
24996	6359 ChEBI	lactulose	-	respiration
24996	25094 ChEBI	lysine	-	carbon source
24996	17306 ChEBI	maltose	-	builds acid from
24996	17306 ChEBI	maltose	-	carbon source
24996	51850 ChEBI	methyl pyruvate	-	respiration
24996	75146 ChEBI	monomethyl succinate	-	respiration
24996	17268 ChEBI	myo-inositol	-	carbon source
24996	17632 ChEBI	nitrate	-	reduction
24996	17272 ChEBI	propionate	-	respiration
24996	16634 ChEBI	raffinose	-	respiration
24996	28017 ChEBI	starch	+	hydrolysis
24996	28017 ChEBI	starch	+	builds acid from
24996	30031 ChEBI	succinate	-	respiration
24996	17992 ChEBI	sucrose	-	builds acid from
24996	17992 ChEBI	sucrose	+	respiration
24996	27082 ChEBI	trehalose	-	respiration
24996	32528 ChEBI	turanose	-	respiration
24996	53424 ChEBI	tween 20	+	carbon source
24996	53424 ChEBI	tween 20	+/-	hydrolysis
24996	53423 ChEBI	tween 40	-	respiration
24996	53423 ChEBI	tween 40	+	hydrolysis
24996	53423 ChEBI	tween 40	+	carbon source
24996	53425 ChEBI	tween 60	+	hydrolysis
24996	53425 ChEBI	tween 60	+	carbon source
24996	53426 ChEBI	tween 80	-	hydrolysis
24996	53426 ChEBI	tween 80	+	carbon source
24996	16199 ChEBI	urea	-	hydrolysis
24996	16704 ChEBI	uridine	+	respiration
24996	18222 ChEBI	xylose	-	builds acid from

Antibiotic resistance

@ref	ChEBI	Metabolite
24996	3493	cefoperazone
24996	3508	ceftazidime
24996	50845	doxycycline
24996	100246	norfloxacin
24996	7731	ofloxacin

Metabolite production

@ref	Chebi-ID	Metabolite	Production
24996	16136 ChEBI	hydrogen sulfide
24996	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
24996	acid phosphatase	+	3.1.3.2
24996	alkaline phosphatase	+	3.1.3.1
24996	alpha-chymotrypsin	+	3.4.21.1
24996	alpha-fucosidase	-	3.2.1.51
24996	alpha-galactosidase	-	3.2.1.22
24996	alpha-glucosidase	+	3.2.1.20
24996	alpha-mannosidase	-	3.2.1.24
24996	beta-galactosidase	-	3.2.1.23
24996	beta-glucosidase	-	3.2.1.21
24996	beta-glucuronidase	-	3.2.1.31
24996	catalase	+	1.11.1.6
24996	cystine arylamidase	+	3.4.11.3
24996	cytochrome oxidase	+	1.9.3.1
24996	esterase (C 4)	+
24996	esterase Lipase (C 8)	+
24996	leucine arylamidase	+	3.4.11.1
24996	lipase (C 14)	-
24996	N-acetyl-beta-glucosaminidase	-	3.2.1.52
24996	naphthol-AS-BI-phosphohydrolase	+
24996	trypsin	+	3.4.21.4
24996	valine arylamidase	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Surface water

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude	Enrichment culture	Enrichment culture temperature	Isolation procedure
24996	surface seawater	Yellow Sea coast	Republic of China	CHN	Asia	35.475	119.613 35.475/119.613	marine agar 2216 (MA)	25	streaking three times on MA
67770	Seawater from near the Yellow Sea coast of China
67771	From coastal surface seawater off the Yellow Sea coast		China	CHN	Asia	35.475	119.613 35.475/119.613

Taxonmaps

69479

Global distribution of 16S sequence KR080701 (>99% sequence identity) for Polaribacter marinaquae subclade from Microbeatlas

Aquatic Samples	1879
Soil Samples	58
Animal Samples	194
Plant Samples	21
Total Samples	2152

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM3801902v1 assembly for Polaribacter marinaquae MCCC 1K00696	complete	GCA_038019025	1642819	92.16
124043	ASM4268456v1 assembly for Polaribacter marinaquae KCTC 42664	scaffold	GCA_042684565	1642819	67.72

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
24996	Polaribacter marinaquae strain RZW3-2 16S ribosomal RNA gene, partial sequence	KR080701	1479		1642819

GC content

@ref	GC-content (mol%)	Method
24996	30.5	high performance liquid chromatography (HPLC)
67771	30.5

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Polaribacter litorisediminis sp. nov., isolated from a tidal flat.	Park S, Yoon SY, Ha MJ, Yoon JH	Int J Syst Evol Microbiol	10.1099/ijsem.0.001919	2017
Phylogeny	Polaribacter marinaquae sp. nov., isolated from seawater.	Wang Y, Gao L, Ming H, Zhang P, Zhu W	Int J Syst Evol Microbiol	10.1099/ijsem.0.001396	2016

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#24996	Y. G. Wang, Liyun,Ming, Hong,Zhang, Peng,Zhu, Wuling: Polaribacter marinaquae sp. nov., isolated from seawater. IJSEM 66: 4594 - 4599 2016 ( DOI 10.1099/ijsem.0.001396 , PubMed 27498989 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Polaribacter marinaquae (RZW3-2, JCM 30825, KCTC 42664)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Observation

Metabolite utilization

Antibiotic resistance

Metabolite production

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_038019025

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

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