Strain identifier

BacDive ID: 133198

Type strain: Yes

Species: Polaribacter marinaquae

Strain Designation: RZW3-2

Strain history: <- Yan Wang, XinXiang Medical Univ.

NCBI tax ID(s): 1642819 (species)

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General

@ref: 24996

BacDive-ID: 133198

keywords: 16S sequence, Bacteria, obligate aerobe, Gram-negative, rod-shaped, colony-forming

description: Polaribacter marinaquae RZW3-2 is an obligate aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from surface seawater.

NCBI tax id

  • NCBI tax id: 1642819
  • Matching level: species

strain history

@refhistory
67770Y. Wang; Sch. of Life Sci. & Technol., Xin Xiang Med. Univ., China; RZW3-2.
67771<- Yan Wang, XinXiang Medical Univ.

doi: 10.13145/bacdive133198.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Flavobacteriaceae
  • genus: Polaribacter
  • species: Polaribacter marinaquae
  • full scientific name: Polaribacter marinaquae Wang et al. 2016

@ref: 24996

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Polaribacter

species: Polaribacter marinaquae

strain designation: RZW3-2

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotility
24996negative1.5-2.7 µm0.4-0.5 µmrod-shapedno
67771rod-shaped
67771negative

colony morphology

  • @ref: 24996
  • colony size: 1.5-2.0 mm
  • colony color: yellow
  • colony shape: circular
  • incubation period: 2 days
  • medium used: MA (marine agar)

Culture and growth conditions

culture medium

  • @ref: 24996
  • name: Marine agar (MA)
  • growth: yes

culture temp

@refgrowthtypetemperaturerange
24996positivegrowth4.0-32.0
24996positiveoptimum24.0-28.0
24996nogrowth0psychrophilic
24996positivegrowth16psychrophilic
67770positivegrowth30mesophilic
67771positivegrowth28mesophilic

culture pH

@refabilitytypepHPH range
24996positivegrowth5.0-10.0alkaliphile
24996positiveoptimum6.0-7.0

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
24996obligate aerobe
67771aerobe

spore formation

  • @ref: 24996
  • spore formation: no

observation

@refobservation
67770quinones: MK-6
67771quinones: MK-6

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
24996309162-oxoglutarate-respiration
24996286442-oxopentanoate-respiration
249962509agar-hydrolysis
2499616449alanine-carbon source
2499636219alpha-lactose-respiration
2499616150benzoate-carbon source
2499617126carnitine-respiration
24996casein-hydrolysis
2499617029chitin-hydrolysis
2499616947citrate-carbon source
2499616947citrate-respiration
2499617057cellobiose-carbon source
2499617057cellobiose-respiration
2499615824D-fructose-respiration
2499612936D-galactose-carbon source
2499614314D-glucose 6-phosphate-respiration
2499617716lactose-builds acid from
2499617306maltose-builds acid from
2499616024D-mannose-carbon source
2499616024D-mannose-respiration
2499665327D-xylose-carbon source
2499628757fructose-carbon source
2499628066gentiobiose-respiration
2499629042glucose 1-phosphate-respiration
2499617754glycerol-builds acid from
2499617754glycerol-carbon source
2499628087glycogen-respiration
2499617596inosine-respiration
2499617268myo-inositol-carbon source
2499621217L-alaninamide-respiration
2499616977L-alanine-respiration
2499617196L-asparagine-respiration
2499629985L-glutamate-carbon source
2499615971L-histidine-carbon source
2499615603L-leucine-carbon source
2499615603L-leucine-respiration
2499617295L-phenylalanine-carbon source
2499617295L-phenylalanine-respiration
2499618183L-pyroglutamic acid-respiration
2499617716lactose-carbon source
249966359lactulose-respiration
2499625094lysine-carbon source
2499617306maltose-carbon source
2499651850methyl pyruvate-respiration
2499675146monomethyl succinate-respiration
2499617632nitrate-reduction
2499617272propionate-respiration
2499616634raffinose-respiration
2499630031succinate-respiration
2499617992sucrose-builds acid from
2499627082trehalose-respiration
2499632528turanose-respiration
2499653423tween 40-respiration
2499653426tween 80-hydrolysis
2499616199urea-hydrolysis
2499618222xylose-builds acid from
24996167632-oxobutanoate+respiration
24996182404-hydroxy-L-proline+respiration
24996581435-dehydro-D-gluconate+builds acid from
2499630089acetate+carbon source
2499630089acetate+respiration
2499658187alginate+carbon source
2499640585alpha-cyclodextrin+respiration
2499617925alpha-D-glucose+respiration
2499673706bromosuccinate+respiration
2499612936D-galactose+respiration
2499615748D-glucuronate+respiration
2499616899D-mannitol+respiration
2499623652dextrin+respiration
2499616991dna+hydrolysis
249965291gelatin+hydrolysis
2499614336glycerol 1-phosphate+respiration
2499673804glycyl L-aspartic acid+respiration
2499673786L-alanylglycine+respiration
2499629991L-aspartate+respiration
2499629985L-glutamate+respiration
2499615729L-ornithine+respiration
2499617203L-proline+respiration
2499617115L-serine+respiration
2499616857L-threonine+respiration
2499624996lactate+respiration
2499628017starch+hydrolysis
2499628017starch+builds acid from
2499617992sucrose+respiration
2499653424tween 20+carbon source
2499653423tween 40+hydrolysis
2499653423tween 40+carbon source
2499653425tween 60+hydrolysis
2499653425tween 60+carbon source
2499653426tween 80+carbon source
2499616704uridine+respiration
249964853esculin+/-hydrolysis
2499653424tween 20+/-hydrolysis

antibiotic resistance

@refChEBImetaboliteis antibioticis sensitive
249963508ceftazidimeyesno
2499650845doxycyclineyesno
249967731ofloxacinyesno
24996100246norfloxacinyesno
249963493cefoperazoneyesyes

metabolite production

@refChebi-IDmetaboliteproduction
2499616136hydrogen sulfideno
2499635581indoleno

enzymes

@refvalueactivityec
24996acid phosphatase+3.1.3.2
24996alkaline phosphatase+3.1.3.1
24996alpha-chymotrypsin+3.4.21.1
24996alpha-fucosidase-3.2.1.51
24996alpha-galactosidase-3.2.1.22
24996alpha-glucosidase+3.2.1.20
24996alpha-mannosidase-3.2.1.24
24996beta-galactosidase-3.2.1.23
24996beta-glucosidase-3.2.1.21
24996beta-glucuronidase-3.2.1.31
24996catalase+1.11.1.6
24996cystine arylamidase+3.4.11.3
24996cytochrome oxidase+1.9.3.1
24996esterase (C 4)+
24996esterase Lipase (C 8)+
24996leucine arylamidase+3.4.11.1
24996lipase (C 14)-
24996N-acetyl-beta-glucosaminidase-3.2.1.52
24996naphthol-AS-BI-phosphohydrolase+
24996trypsin+3.4.21.4
24996valine arylamidase+

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitudeenrichment cultureenrichment culture temperatureisolation procedure
24996surface seawaterYellow Sea coastRepublic of ChinaCHNAsia35.475119.613marine agar 2216 (MA)25streaking three times on MA
67770Seawater from near the Yellow Sea coast of China
67771From coastal surface seawater off the Yellow Sea coastChinaCHNAsia35.475119.613

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Marine
#Environmental#Aquatic#Surface water

taxonmaps

  • @ref: 69479
  • File name: preview.99_3633.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_214;96_760;97_885;98_2778;99_3633&stattab=map
  • Last taxonomy: Polaribacter marinaquae subclade
  • 16S sequence: KR080701
  • Sequence Identity:
  • Total samples: 2152
  • soil counts: 58
  • aquatic counts: 1879
  • animal counts: 194
  • plant counts: 21

Sequence information

16S sequences

  • @ref: 24996
  • description: Polaribacter sp. RZW3-2 16S ribosomal RNA gene, partial sequence
  • accession: KR080701
  • length: 1479
  • database: nuccore
  • NCBI tax ID: 1642819

GC content

@refGC-contentmethod
2499630.5high performance liquid chromatography (HPLC)
6777130.5

External links

@ref: 24996

culture collection no.: JCM 30825, KCTC 42664, MCCC 1K00696

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny27498989Polaribacter marinaquae sp. nov., isolated from seawater.Wang Y, Gao L, Ming H, Zhang P, Zhu WInt J Syst Evol Microbiol10.1099/ijsem.0.0013962016Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacteriaceae/*classification/genetics/isolation & purification, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistryTranscriptome
Phylogeny28665265Polaribacter litorisediminis sp. nov., isolated from a tidal flat.Park S, Yoon SY, Ha MJ, Yoon JHInt J Syst Evol Microbiol10.1099/ijsem.0.0019192017Animals, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacteriaceae/*classification/genetics/isolation & purification, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Seawater/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistryTranscriptome

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
24996Y. G. Wang, Liyun,Ming, Hong,Zhang, Peng,Zhu, WulingPolaribacter marinaquae sp. nov., isolated from seawater10.1099/ijsem.0.001396IJSEM 66: 4594-4599 201627498989
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/