Name: Shinella curvata C3
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133167

Type strain:

Species: Shinella curvata

Strain Designation: C3

Culture col. no.: KEMB 2255-446, JCM 31239

Strain history: S.-S. Lee; KEMB, Kyonggi Univ., South Korea; C3.

NCBI tax ID(s): 1817964 (species)

Section

Shinella curvata C3 is a chemoorganoheterotroph, Gram-negative, rod-shaped bacterium that was isolated from hydrocarbon-contaminated desert sands.

Gram-negative
rod-shaped
chemoorganoheterotroph
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Rhizobiaceae*
	Genus	*Shinella*
	Species	**Shinella curvata**
	Full Scientific Name (LPSN)	Shinella curvata Subhash and Lee 2016

Information on morphological and physiological properties Morphology

[Ref.: #24941]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.806

[Ref.: #24941]	Cell length	1.9-2.8 µm

[Ref.: #24941]	Cell width	0.5-0.6 µm

[Ref.: #24941]	Cell shape	rod-shaped

[Ref.: #24941]	Motility	no
[Ref.: #69480]	Motility	yes Confidence in %95.647

[Ref.: #24941]

Colony color

cream

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #24941]	growth	4-45 °C
[Ref.: #24941]	optimum	28-35 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #24941]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #24941]			optimum	6.9-7.7
[Ref.: #24941]			growth	6.1-8.8

Information on physiology and metabolism Physiology and metabolism

[Ref.: #24941]

Nutrition type

chemoorganoheterotroph

[Ref.: #69481]	Ability of spore formation	no Confidence in %99
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.868

	Salt		Salt conc.
[Ref.: #24941]	NaCl	maximum	3.5	%(w/v)
[Ref.: #24941]	NaCl	growth	0.5	%(w/v)
[Ref.: #24941]	NaCl	growth	0-3.5	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #24941]	ammonium chloride ChEBI	+	nitrogen source
[Ref.: #24941]	aspartate ChEBI	+	carbon source
[Ref.: #24941]	casein	+	hydrolysis
[Ref.: #24941]	cellobiose ChEBI	-	carbon source
[Ref.: #24941]	cellobiose ChEBI	-	builds acid from
[Ref.: #24941]	chitin ChEBI	-	hydrolysis
[Ref.: #24941]	D-fructose ChEBI	+	builds acid from
[Ref.: #24941]	D-glucose ChEBI	+	carbon source
[Ref.: #24941]	D-glucose ChEBI	+	builds acid from
[Ref.: #24941]	D-mannitol ChEBI	+	carbon source
[Ref.: #24941]	D-ribose ChEBI	+	carbon source
[Ref.: #24941]	D-sorbitol ChEBI	+	carbon source
[Ref.: #24941]	dna ChEBI	-	hydrolysis
[Ref.: #24941]	esculin ChEBI	-	hydrolysis
[Ref.: #24941]	fructose ChEBI	+	carbon source
[Ref.: #24941]	gelatin ChEBI	-	hydrolysis
[Ref.: #24941]	glucose ChEBI	-	fermentation
[Ref.: #24941]	glutamate ChEBI	+	carbon source
[Ref.: #24941]	L-arabinose ChEBI	-	carbon source
[Ref.: #24941]	L-arabinose ChEBI	-	builds acid from
[Ref.: #24941]	L-rhamnose ChEBI	-	carbon source
[Ref.: #24941]	L-rhamnose ChEBI	-	builds acid from
[Ref.: #24941]	malate ChEBI	+	carbon source
[Ref.: #24941]	maltose ChEBI	-	builds acid from
[Ref.: #24941]	maltose ChEBI	+	carbon source
[Ref.: #24941]	melibiose ChEBI	+	carbon source
[Ref.: #24941]	melibiose ChEBI	+	builds acid from
[Ref.: #24941]	pyruvate ChEBI	+	carbon source
[Ref.: #24941]	raffinose ChEBI	-	carbon source
[Ref.: #24941]	raffinose ChEBI	-	builds acid from
[Ref.: #24941]	starch ChEBI	+	hydrolysis
[Ref.: #24941]	sucrose ChEBI	+	carbon source
[Ref.: #24941]	tryptophan ChEBI	-	energy source
[Ref.: #24941]	tween 20 ChEBI	+	hydrolysis
[Ref.: #24941]	tween 80 ChEBI	-	hydrolysis
[Ref.: #24941]	urea ChEBI	-	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #24941]	ampicillin ChEBI	yes
[Ref.: #24941]	chloramphenicol ChEBI		yes
[Ref.: #24941]	nalidixic acid ChEBI	yes
[Ref.: #24941]	penicillin g ChEBI		yes
[Ref.: #24941]	rifampicin ChEBI		yes

	Metabolite production	Metabolite	Production
[Ref.: #24941]		acetoin ChEBI	no
[Ref.: #24941]		indole ChEBI	no

	Metabolite	Voges-Proskauer-test	Methylred-test	Indole test
[Ref.: #24941]	acetoin ChEBI	-
[Ref.: #24941]	glucose ChEBI		-
[Ref.: #24941]	indole ChEBI			-

	Enzyme	Enzyme activity	EC number
[Ref.: #24941]	acid phosphatase	+	3.1.3.2
[Ref.: #24941]	alkaline phosphatase	+	3.1.3.1
[Ref.: #24941]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #24941]	alpha-fucosidase	+	3.2.1.51
[Ref.: #24941]	alpha-galactosidase	-	3.2.1.22
[Ref.: #24941]	alpha-glucosidase	-	3.2.1.20
[Ref.: #24941]	alpha-mannosidase	-	3.2.1.24
[Ref.: #24941]	arginine decarboxylase	-	4.1.1.19
[Ref.: #24941]	beta-galactosidase	+	3.2.1.23
[Ref.: #24941]	beta-glucosidase	+	3.2.1.21
[Ref.: #24941]	beta-glucuronidase	-	3.2.1.31
[Ref.: #24941]	catalase	+	1.11.1.6
[Ref.: #24941]	cystine arylamidase	+	3.4.11.3
[Ref.: #24941]	cytochrome oxidase	+	1.9.3.1
[Ref.: #24941]	esterase (C 4)	+
[Ref.: #24941]	esterase lipase (C 8)	-
[Ref.: #24941]	leucine arylamidase	+	3.4.11.1
[Ref.: #24941]	lipase (C 14)	-
[Ref.: #24941]	lysine decarboxylase	-	4.1.1.18
[Ref.: #24941]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #24941]	naphthol-AS-BI-phosphohydrolase	-
[Ref.: #24941]	trypsin	-	3.4.21.4
[Ref.: #24941]	tryptophan deaminase	-	4.1.99.1
[Ref.: #24941]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24941]	Sample type/isolated from	hydrocarbon-contaminated desert sands
[Ref.: #24941]	Country	Kuwait
[Ref.: #24941]	Country ISO 3 Code	KWT
[Ref.: #24941]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Hydrocarbon-contaminated desert sands
* marker position based on {}

Isolation sources categories

#Engineered	#Contamination	-
#Environmental	#Terrestrial	#Desert
#Environmental	#Terrestrial	#Sandy

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence LT545981 (>99% sequence identity) for Shinella from Microbeatlas

Aquatic Samples	1019
Soil Samples	353
Animal Samples	568
Plant Samples	143
Total Samples	2083

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #24941]	Shinella sp. C3 partial 16S rRNA gene, strain C3	LT545981	1423	GenBank	1817964 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Shinella curvata JCM 31239	GCA_010994455	contig	GenBank	1817964 tax ID
[Ref.: #66792]	Shinella curvata strain JCM 31239	1817964.4	wgs	PATRIC	1817964 tax ID	*
[Ref.: #66792]	Shinella curvata JCM 31239	2891339218	draft	JGI IMG/M	1817964 tax ID	*
[Ref.: #66792]	Shinella curvata C3	GCA_022899935	scaffold	GenBank	1817964 tax ID	*

[Ref.: #24941]

GC-content

65.4 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Shinella curvata strain JCM 31239 PATRIC: 1817964.4
[Ref.: #69481]	spore-forming	no	99	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Shinella curvata strain JCM 31239 PATRIC: 1817964.4
[Ref.: #69480]	motile	yes	75.683	yes
[Ref.: #69480]	gram-positive	no	96.781	yes
[Ref.: #69480]	anaerobic	no	97.797	no
[Ref.: #69480]	aerobic	yes	82.094	no
[Ref.: #69480]	halophile	no	84.323	no
[Ref.: #69480]	spore-forming	no	88.331	no
[Ref.: #69480]	glucose-util	yes	93.617	no
[Ref.: #69480]	flagellated	no	60.252	no
[Ref.: #69480]	thermophile	no	99.813	yes
[Ref.: #69480]	glucose-ferment	no	85.951	yes

Availability in culture collections External links

[Ref.: #24941]

Culture collection no.

KEMB 2255-446, JCM 31239

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Shinella curvata sp. nov., isolated from hydrocarbon-contaminated desert sands.	Subhash Y, Lee SS	Int J Syst Evol Microbiol	10.1099/ijsem.0.001290	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24941

Y. L. Subhash, Sang-Seob: Shinella curvata sp. nov., isolated from hydrocarbon-contaminated desert sands. IJSEM 66: 3929 - 3934 2016 ( DOI 10.1099/ijsem.0.001290 , PubMed 27393556 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Shinella curvata strain JCM 31239

Shinella curvata strain JCM 31239

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