Skermanella rosea (M1, KEMB 2255-458, JCM 31276)

Name: Skermanella rosea (M1, KEMB 2255-458, JCM 31276)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 133168

Type strain

Strain Designation M1

Culture col. no. M1 KEMB 2255-458 JCM 31276

NCBI tax ID(s) 1817965

Special Collections JCM Literature strains

History S.-S. Lee; KEMB, Kyonggi Univ., South Korea; M1.

Links

Skermanella rosea M1 is a chemoorganoheterotroph, Gram-negative, motile bacterium that was isolated from hydrocarbon-contaminated desert sands.

Gram-negative motile rod-shaped chemoorganoheterotroph genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 132843

JCM 31276

@ref 20215

Last LPSN update 2026-02-09 11:31:53

Domain Bacteria

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Rhodospirillales

Family Azospirillaceae

Genus Skermanella

Species Skermanella rosea

Full scientific name Skermanella rosea Subhash and Lee 2016

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility	Flagellum arrangement
24943	negative	1.4-1.5 µm	0.8-0.9 µm	rod-shaped		polar

Colony morphology

24943

Colony colordark pink

Pigmentation

@ref	Production	Name
24943		carotenoid pigment

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
24943	positive	growth	12-45
24943	positive	optimum	27-32
67770	positive	growth	30

Culture pH

@ref	Ability	Type	PH	PH range
24943	positive	optimum	6.1-8.8	alkaliphile
24943	positive	growth	6.5-7.5

Physiology and metabolism

Nutrition type

24943

Typechemoorganoheterotroph

Halophily

@ref	Salt	Growth	Tested relation	Concentration
24943	NaCl	positive	growth	0-4.5 %
24943	NaCl	positive	optimum	0-0.5 %
24943	NaCl	positive	maximum	4.5 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
24943	35391 ChEBI	aspartate	+	carbon source
24943	85146 ChEBI	carboxymethylcellulose	-	hydrolysis
24943		casein	+	hydrolysis
24943	17057 ChEBI	cellobiose	-	carbon source
24943	17057 ChEBI	cellobiose	-	builds acid from
24943	17029 ChEBI	chitin	-	hydrolysis
24943	15824 ChEBI	D-fructose	+	carbon source
24943	15824 ChEBI	D-fructose	+	builds acid from
24943	12936 ChEBI	D-galactose	+	carbon source
24943	12936 ChEBI	D-galactose	+	builds acid from
24943	17634 ChEBI	D-glucose	+	carbon source
24943	17634 ChEBI	D-glucose	+	builds acid from
24943	16899 ChEBI	D-mannitol	+	carbon source
24943	17924 ChEBI	D-sorbitol	+	carbon source
24943	16991 ChEBI	dna	-	hydrolysis
24943	5291 ChEBI	gelatin	-	hydrolysis
24943	17234 ChEBI	glucose	-	fermentation
24943	29987 ChEBI	glutamate	-	carbon source
24943	30849 ChEBI	L-arabinose	+	carbon source
24943	30849 ChEBI	L-arabinose	+	builds acid from
24943	62345 ChEBI	L-rhamnose	-	carbon source
24943	17716 ChEBI	lactose	-	carbon source
24943	17306 ChEBI	maltose	-	carbon source
24943	17306 ChEBI	maltose	-	builds acid from
24943	17632 ChEBI	nitrate	-	reduction
24943	15361 ChEBI	pyruvate	+	carbon source
24943	16634 ChEBI	raffinose	-	carbon source
24943	16634 ChEBI	raffinose	-	builds acid from
24943	28017 ChEBI	starch	-	hydrolysis
24943	17992 ChEBI	sucrose	+	carbon source
24943	17992 ChEBI	sucrose	+	builds acid from
24943	27897 ChEBI	tryptophan	-	energy source
24943	53424 ChEBI	tween 20	+	hydrolysis
24943	53426 ChEBI	tween 80	+	hydrolysis
24943	18186 ChEBI	tyrosine	+	hydrolysis
24943	16199 ChEBI	urea	-	hydrolysis

Antibiotic resistance

@ref	ChEBI	Metabolite
24943	28971	ampicillin
24943	17698	chloramphenicol
24943	100147	nalidixic acid
24943	18208	penicillin g
24943	28077	rifampicin

Metabolite production

@ref	Chebi-ID	Metabolite	Production
24943	15688 ChEBI	acetoin
24943	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Methylred-test	Indole test
24943	15688 ChEBI	acetoin	-
24943	17234 ChEBI	glucose		-
24943	35581 ChEBI	indole			-

Enzymes

@ref	Value	Activity	Ec
24943	acid phosphatase	+	3.1.3.2
24943	alkaline phosphatase	+	3.1.3.1
24943	alpha-chymotrypsin	-	3.4.21.1
24943	alpha-fucosidase	-	3.2.1.51
24943	alpha-galactosidase	-	3.2.1.22
24943	alpha-glucosidase	+	3.2.1.20
24943	alpha-mannosidase	-	3.2.1.24
24943	arginine dihydrolase	-	3.5.3.6
24943	beta-galactosidase	-	3.2.1.23
24943	beta-glucosidase	-	3.2.1.21
24943	beta-glucuronidase	-	3.2.1.31
24943	catalase	+	1.11.1.6
24943	cystine arylamidase	-	3.4.11.3
24943	cytochrome oxidase	+	1.9.3.1
24943	esterase (C 4)	+
24943	esterase lipase (C 8)	+
24943	leucine arylamidase	+	3.4.11.1
24943	lipase (C 14)	-
24943	N-acetyl-beta-glucosaminidase	-	3.2.1.52
24943	naphthol-AS-BI-phosphohydrolase	+
24943	trypsin	-	3.4.21.4
24943	tryptophan deaminase	-	4.1.99.1
24943	valine arylamidase	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Contamination	-
#Environmental	#Terrestrial	#Desert
#Environmental	#Terrestrial	#Sandy

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
24943	hydrocarbon-contaminated desert sands	Kuwait	KWT	Asia
67770	Hydrocarbon-contaminated desert sands	Kuwait	KWT	Asia

Taxonmaps

69479

Global distribution of 16S sequence LT545982 (>99% sequence identity) for Skermanella from Microbeatlas

Aquatic Samples	3
Soil Samples	14
Animal Samples	13
Plant Samples
Total Samples	30

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
124043	ASM1680683v2 assembly for Skermanella rosea KEMB 2255-458	complete	GCA_016806835	1817965.3	8057682428	1817965	93.33

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
24943	Skermanella sp. M1 partial 16S rRNA gene, strain M1	LT545982	1416		1817965

GC content

@ref	GC-content (mol%)	Method
24943	69.5	high performance liquid chromatography (HPLC)

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Skermanella rosea sp. nov., isolated from hydrocarbon-contaminated desert sands.	Subhash Y, Lee SS	Int J Syst Evol Microbiol	10.1099/ijsem.0.001293	2016

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#24943	Y. L. Subhash, Sang-Seob: Skermanella rosea sp. nov., isolated from hydrocarbon-contaminated desert sands. IJSEM 66: 3951 - 3956 2016 ( DOI 10.1099/ijsem.0.001293 , PubMed 27406793 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Skermanella rosea (M1, KEMB 2255-458, JCM 31276)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Pigmentation

Culture and growth conditions

Culture temp

Culture pH

Physiology and metabolism

Nutrition type

Halophily

Metabolite utilization

Antibiotic resistance

Metabolite production

Metabolite tests

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_016806835

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

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