Name: Skermanella rosea M1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133168

Type strain:

Species: Skermanella rosea

Strain Designation: M1

Culture col. no.: KEMB 2255-458, JCM 31276

Strain history: S.-S. Lee; KEMB, Kyonggi Univ., South Korea; M1.

NCBI tax ID(s): 1817965 (species)

Section

Skermanella rosea M1 is a chemoorganoheterotroph, Gram-negative, motile bacterium that was isolated from hydrocarbon-contaminated desert sands.

Gram-negative
motile
rod-shaped
chemoorganoheterotroph
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodospirillales*
	Family	*Azospirillaceae*
	Genus	*Skermanella*
	Species	**Skermanella rosea**
	Full Scientific Name (PNU)	Skermanella rosea Subhash and Lee 2016

Information on morphological and physiological properties Morphology

[Ref.: #24943]	Gram stain	negative
[Ref.: #24943]	Cell length	1.4-1.5 µm
[Ref.: #24943]	Cell width	0.8-0.9 µm
[Ref.: #24943]	Cell shape	rod-shaped
[Ref.: #24943]	Motility	yes
[Ref.: #24943]	Flagellum arrangement	polar

[Ref.: #24943]

Colony color

dark pink

[Ref.: #24943]	Pigment production	yes
[Ref.: #24943]	Pigment name	Carotenoid pigments

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #24943]	growth	12-45 °C
[Ref.: #24943]	optimum	27-32 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #24943]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #24943]			optimum	6.1-8.8
[Ref.: #24943]			growth	6.5-7.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #24943]

Nutrition type

chemoorganoheterotroph

	Salt		Salt conc.
[Ref.: #24943]	NaCl	growth	0-4.5	%
[Ref.: #24943]	NaCl	optimum	0-0.5	%
[Ref.: #24943]	NaCl	maximum	4.5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #24943]	aspartate ChEBI	+	carbon source
[Ref.: #24943]	carboxymethylcellulose ChEBI	-	hydrolysis
[Ref.: #24943]	casein	+	hydrolysis
[Ref.: #24943]	cellobiose ChEBI	-	carbon source
[Ref.: #24943]	cellobiose ChEBI	-	builds acid from
[Ref.: #24943]	chitin ChEBI	-	hydrolysis
[Ref.: #24943]	D-fructose ChEBI	+	carbon source
[Ref.: #24943]	D-fructose ChEBI	+	builds acid from
[Ref.: #24943]	D-galactose ChEBI	+	carbon source
[Ref.: #24943]	D-galactose ChEBI	+	builds acid from
[Ref.: #24943]	D-glucose ChEBI	+	carbon source
[Ref.: #24943]	D-glucose ChEBI	+	builds acid from
[Ref.: #24943]	D-mannitol ChEBI	+	carbon source
[Ref.: #24943]	D-sorbitol ChEBI	+	carbon source
[Ref.: #24943]	dna ChEBI	-	hydrolysis
[Ref.: #24943]	gelatin ChEBI	-	hydrolysis
[Ref.: #24943]	glucose ChEBI	-	fermentation
[Ref.: #24943]	glutamate ChEBI	-	carbon source
[Ref.: #24943]	L-arabinose ChEBI	+	carbon source
[Ref.: #24943]	L-arabinose ChEBI	+	builds acid from
[Ref.: #24943]	L-rhamnose ChEBI	-	carbon source
[Ref.: #24943]	lactose ChEBI	-	carbon source
[Ref.: #24943]	maltose ChEBI	-	carbon source
[Ref.: #24943]	maltose ChEBI	-	builds acid from
[Ref.: #24943]	nitrate ChEBI	-	reduction
[Ref.: #24943]	pyruvate ChEBI	+	carbon source
[Ref.: #24943]	raffinose ChEBI	-	carbon source
[Ref.: #24943]	raffinose ChEBI	-	builds acid from
[Ref.: #24943]	starch ChEBI	-	hydrolysis
[Ref.: #24943]	sucrose ChEBI	+	carbon source
[Ref.: #24943]	sucrose ChEBI	+	builds acid from
[Ref.: #24943]	tryptophan ChEBI	-	energy source
[Ref.: #24943]	tween 20 ChEBI	+	hydrolysis
[Ref.: #24943]	tween 80 ChEBI	+	hydrolysis
[Ref.: #24943]	tyrosine ChEBI	+	hydrolysis
[Ref.: #24943]	urea ChEBI	-	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #24943]	ampicillin ChEBI	yes
[Ref.: #24943]	chloramphenicol ChEBI	yes
[Ref.: #24943]	nalidixic acid ChEBI	yes
[Ref.: #24943]	penicillin g ChEBI		yes
[Ref.: #24943]	rifampicin ChEBI		yes

	Metabolite production	Metabolite
[Ref.: #24943]		acetoin ChEBI
[Ref.: #24943]		indole ChEBI

	Metabolite	Voges-Proskauer-test	Methylred-test	Indole test
[Ref.: #24943]	acetoin ChEBI	-
[Ref.: #24943]	glucose ChEBI		-
[Ref.: #24943]	indole ChEBI			-

	Enzyme	Enzyme activity	EC number
[Ref.: #24943]	acid phosphatase	+	3.1.3.2
[Ref.: #24943]	alkaline phosphatase	+	3.1.3.1
[Ref.: #24943]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #24943]	alpha-fucosidase	-	3.2.1.51
[Ref.: #24943]	alpha-galactosidase	-	3.2.1.22
[Ref.: #24943]	alpha-glucosidase	+	3.2.1.20
[Ref.: #24943]	alpha-mannosidase	-	3.2.1.24
[Ref.: #24943]	arginine dihydrolase	-	3.5.3.6
[Ref.: #24943]	beta-galactosidase	-	3.2.1.23
[Ref.: #24943]	beta-glucosidase	-	3.2.1.21
[Ref.: #24943]	beta-glucuronidase	-	3.2.1.31
[Ref.: #24943]	catalase	+	1.11.1.6
[Ref.: #24943]	cystine arylamidase	-	3.4.11.3
[Ref.: #24943]	cytochrome oxidase	+	1.9.3.1
[Ref.: #24943]	esterase (C 4)	+
[Ref.: #24943]	esterase lipase (C 8)	+
[Ref.: #24943]	leucine arylamidase	+	3.4.11.1
[Ref.: #24943]	lipase (C 14)	-
[Ref.: #24943]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #24943]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #24943]	trypsin	-	3.4.21.4
[Ref.: #24943]	tryptophan deaminase	-	4.1.99.1
[Ref.: #24943]	valine arylamidase	-
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24943]	Sample type/isolated from	hydrocarbon-contaminated desert sands
[Ref.: #24943]	Country	Kuwait
[Ref.: #24943]	Country ISO 3 Code	KWT
[Ref.: #24943]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Hydrocarbon-contaminated desert sands
[Ref.: #67770]	Country	Kuwait
[Ref.: #67770]	Country ISO 3 Code	KWT
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Contamination	-
#Environmental	#Terrestrial	#Desert
#Environmental	#Terrestrial	#Sandy

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence LT545982 (>99% sequence identity) for Skermanella from Microbeatlas

Aquatic Samples	3
Soil Samples	14
Animal Samples	13
Plant Samples
Total Samples	30

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #24943]	Skermanella sp. M1 partial 16S rRNA gene, strain M1	LT545982	1416	GenBank	1817965 tax ID

[Ref.: #24943]

GC-content

69.5 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #24943]

Culture collection no.

KEMB 2255-458, JCM 31276

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Skermanella rosea sp. nov., isolated from hydrocarbon-contaminated desert sands.	Subhash Y, Lee SS	Int J Syst Evol Microbiol	10.1099/ijsem.0.001293	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24943

Y. L. Subhash, Sang-Seob: Skermanella rosea sp. nov., isolated from hydrocarbon-contaminated desert sands. IJSEM 66: 3951 - 3956 2016 ( DOI 10.1099/ijsem.0.001293 , PubMed 27406793 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Skermanella rosea in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF