Name: Streptomyces phyllanthi PA1-07
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 133132

Type strain:

Species: Streptomyces phyllanthi

Strain Designation: PA1-07

Culture col. no.: JCM 30865, KCTC 39785, TISTR 2346

Strain history: <- Somboon Tanasupawat, Chulalongkorn Univ.

NCBI tax ID(s): 1803180 (species)

Special Collections

Section

Streptomyces phyllanthi PA1-07 is an aerobe, spore-forming, Gram-positive bacterium that was isolated from stem of Phyllanthus amarus.

Gram-positive
spore-forming
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces phyllanthi**
	Full Scientific Name (LPSN)	Streptomyces phyllanthi Klykleung et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #24894]	Gram stain	positive

Information on culture and growth conditions Culture and growth conditions

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Culture medium

Yeast extract-malt extract agar (ISP2)

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Culture medium growth

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Culture medium

Inorganic salts-starch agar (ISP4)

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Culture medium growth

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Culture medium

Oatmeal agar (ISP3)

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Culture medium growth

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Culture medium

Glycerol-asparagine agar (ISP5)

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Culture medium growth

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Culture medium

Peptone Yeast Extract Iron Agar (ISP6)

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Culture medium growth

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Culture medium

Tyrosine Agar (ISP7)

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Culture medium growth

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Culture medium

NA (Nutrient Agar)

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Culture medium growth

		Temperature
[Ref.: #24894]	growth	20.0-40.0 °C
[Ref.: #67770]	growth	28 °C
[Ref.: #67771]	growth	28 °C

	pH	Kind of pH		pH
[Ref.: #24894]			growth	5.0-9.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #24894]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #24894]	Spore description	ovule,rugose surface
[Ref.: #24894]	Type of spore	spore
[Ref.: #24894]	Ability of spore formation	yes
[Ref.: #69480]	Ability of spore formation	yes Confidence in %93.752
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #24894]		NaCl	no	growth	>5.0	%(w/v)

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Observation

quinones: MK-9(H₄), MK-9(H₆), MK-9(H₈)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #24894]	cellobiose ChEBI	+	assimilation
[Ref.: #24894]	D-mannitol ChEBI	+	assimilation
[Ref.: #24894]	D-xylose ChEBI	+	assimilation
[Ref.: #24894]	fructose ChEBI	+	assimilation
[Ref.: #24894]	galactose ChEBI	+	assimilation
[Ref.: #24894]	glucose ChEBI	+	assimilation
[Ref.: #24894]	L-arabinose ChEBI	+	assimilation
[Ref.: #24894]	L-rhamnose ChEBI	+	assimilation
[Ref.: #24894]	myo-inositol ChEBI	+	assimilation
[Ref.: #24894]	nitrate ChEBI	+	reduction
[Ref.: #24894]	raffinose ChEBI	+	assimilation
[Ref.: #24894]	ribose ChEBI	-	assimilation
[Ref.: #24894]	salicin ChEBI	-	assimilation
[Ref.: #24894]	sucrose ChEBI	-	assimilation
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #24894]	acid phosphatase	+	3.1.3.2
[Ref.: #24894]	alkaline phosphatase	+	3.1.3.1
[Ref.: #24894]	alpha-chymotrypsin	+	3.4.21.1
[Ref.: #24894]	alpha-galactosidase	-	3.2.1.22
[Ref.: #24894]	alpha-glucosidase	+	3.2.1.20
[Ref.: #24894]	alpha-mannosidase	+	3.2.1.24
[Ref.: #24894]	beta-galactosidase	+	3.2.1.23
[Ref.: #24894]	beta-glucosidase	+	3.2.1.21
[Ref.: #24894]	beta-glucuronidase	-	3.2.1.31
[Ref.: #24894]	cystine arylamidase	+	3.4.11.3
[Ref.: #24894]	esterase (C 4)	+
[Ref.: #24894]	esterase lipase (C 8)	+
[Ref.: #24894]	leucine arylamidase	+	3.4.11.1
[Ref.: #24894]	lipase (C 14)	-
[Ref.: #24894]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #24894]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #24894]	trypsin	+	3.4.21.4
[Ref.: #24894]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24894]	Sample type/isolated from	stem of Phyllanthus amarus
[Ref.: #24894]	Geographic location (country and/or sea, region)	botanical garden of the Faculty of Pharmaceutical Sciences,Chulalongkorn University,Bangkok
[Ref.: #24894]	Country	Thailand
[Ref.: #24894]	Country ISO 3 Code	THA
[Ref.: #24894]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Stem of Phyllanthus amarus
[Ref.: #67770]	Host species	Phyllanthus amarus
[Ref.: #67770]	Country	Thailand
[Ref.: #67770]	Country ISO 3 Code	THA
[Ref.: #67770]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From stem of plant (Phyllanthus amarus, Euphobiaceae)
[Ref.: #67771]	Geographic location (country and/or sea, region)	Bangkok
[Ref.: #67771]	Country	Thailand
[Ref.: #67771]	Country ISO 3 Code	THA
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Stem (Branch)

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #24894]	Streptomyces phyllanthi gene for 16S ribosomal RNA, partial sequence	LC125632	1462	GenBank ENA	1803180 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Streptomyces phyllanthi TISTR 2346	GCA_009377205	contig	GenBank ENA	1803180 tax ID
[Ref.: #66792]	Streptomyces phyllanthi strain TISTR 2346	1803180.3	wgs	PATRIC	1803180 tax ID	*

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GC-content

71 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces phyllanthi strain TISTR 2346 PATRIC: 1803180.3
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces phyllanthi strain TISTR 2346 PATRIC: 1803180.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	85.312	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	97.065	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	93.752	yes
[Ref.: #69480]	aerobic	aerobicⓘ	yes	87.333	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	97.4	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	87	no

Availability in culture collections External links

[Ref.: #24894]

Culture collection no.

JCM 30865, KCTC 39785, TISTR 2346

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptomyces blattellae, a novel actinomycete isolated from the in vivo of a Blattella germanica.	Liu GM, Yuan LL, Zhang LL, Zeng H	Antonie Van Leeuwenhoek	10.1007/s10482-021-01681-w	2021	*
Phylogeny	Streptomyces acidicola sp. nov., isolated from a peat swamp forest in Thailand.	Lipun K, Chantavorakit T, Mingma R, Duangmal K	J Antibiot (Tokyo)	10.1038/s41429-020-0294-5	2020	*
Phylogeny	Streptomyces phyllanthi sp. nov., isolated from the stem of Phyllanthus amarus.	Klykleung N, Phongsopitanun W, Pittayakhajonwut P, Ohkuma M, Kudo T, Tanasupawat S	Int J Syst Evol Microbiol	10.1099/ijsem.0.001289	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24894

N. P. Klykleung, Wongsakorn,Pittayakhajonwut, Pattama,Ohkuma, Moriya,Kudo, Takuji,Tanasupawat, Somboon: Streptomyces phyllanthi sp. nov., isolated from the stem of Phyllanthus amarus. IJSEM 66: 3923 - 3928 2016 ( DOI 10.1099/ijsem.0.001289 , PubMed 27393329 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Streptomyces phyllanthi strain TISTR 2346

Streptomyces phyllanthi strain TISTR 2346

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