Name: Humibacter aquilariae CC-YTH161
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133102

Type strain:

Species: Humibacter aquilariae

Strain Designation: CC-YTH161

Culture col. no.: BCRC 80936, JCM 31199

Strain history: C.-C. Young; Natl. Chung Hsing Univ., Taiwan; CC-YTH161.

NCBI tax ID(s): 1848970 (species)

Section

Humibacter aquilariae CC-YTH161 is an aerobe, Gram-positive, rod-shaped bacterium that forms circular colonies and was isolated from agarwood sample collected at Nantou County.

colony-forming
Gram-positive
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Microbacteriaceae*
	Genus	*Humibacter*
	Species	**Humibacter aquilariae**
	Full Scientific Name (LPSN)	Humibacter aquilariae Lin et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #25295]	Gram stain	positive

[Ref.: #25295]	Cell length	1.0-1.4 µm

[Ref.: #25295]	Cell width	0.5-0.6 µm

[Ref.: #25295]	Cell shape	rod-shaped

[Ref.: #25295]	Motility	no

[Ref.: #25295]	Colony size	1-2 mm
[Ref.: #25295]	Colony color	yellowish
[Ref.: #25295]	Colony shape	circular
[Ref.: #25295]	Incubation period	2 days
[Ref.: #25295]	Cultivation medium used	NA

Information on culture and growth conditions Culture and growth conditions

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Culture medium

Nutrient agar (NA)

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Culture medium growth

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Culture medium

Trypticase Soy Agar (TSA)

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Culture medium growth

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Culture medium

Reasoner's 2A agar (R2A)

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Culture medium growth

		Temperature
[Ref.: #25295]	growth	20-40 °C
[Ref.: #25295]	optimum	25 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #25295]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #25295]			optimum	7
[Ref.: #25295]			growth	5.0-9.0

Information on physiology and metabolism Physiology and metabolism

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Oxygen tolerance

aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #25295]		NaCl		optimum	1	%
[Ref.: #25295]		NaCl		growth	0-5	%(w/v)

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Observation

quinones: MK-11, MK-12

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #25295]	alpha-D-glucose ChEBI	+	carbon source
[Ref.: #25295]	bromosuccinate ChEBI	+	carbon source
[Ref.: #25295]	cellobiose ChEBI	+	carbon source
[Ref.: #25295]	D-fructose ChEBI	+	carbon source
[Ref.: #25295]	D-gluconate ChEBI	+	carbon source
[Ref.: #25295]	D-glucose ChEBI	+	assimilation
[Ref.: #25295]	D-mannitol ChEBI	+	carbon source
[Ref.: #25295]	D-mannitol ChEBI	+	assimilation
[Ref.: #25295]	D-mannose ChEBI	+	carbon source
[Ref.: #25295]	D-mannose ChEBI	+	assimilation
[Ref.: #25295]	dextrin ChEBI	+	carbon source
[Ref.: #25295]	gelatin ChEBI	+	hydrolysis
[Ref.: #25295]	gentiobiose ChEBI	+	carbon source
[Ref.: #25295]	glycerol ChEBI	+	carbon source
[Ref.: #25295]	glycerol 1-phosphate ChEBI	+	carbon source
[Ref.: #25295]	L-arabinose ChEBI	-	assimilation
[Ref.: #25295]	L-arabinose ChEBI	+	carbon source
[Ref.: #25295]	malate ChEBI	+	assimilation
[Ref.: #25295]	maltose ChEBI	+	carbon source
[Ref.: #25295]	maltose ChEBI	+	assimilation
[Ref.: #25295]	methyl pyruvate ChEBI	+	carbon source
[Ref.: #25295]	N-acetylglucosamine ChEBI	-	assimilation
[Ref.: #25295]	nitrate ChEBI	-	reduction
[Ref.: #25295]	potassium gluconate ChEBI	+	assimilation
[Ref.: #25295]	putrescine ChEBI	+	carbon source
[Ref.: #25295]	sucrose ChEBI	+	carbon source
[Ref.: #25295]	trehalose ChEBI	+	carbon source
[Ref.: #25295]	turanose ChEBI	+	carbon source
[Ref.: #25295]	tween 40 ChEBI	+	carbon source
[Ref.: #25295]	tween 80 ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #25295]	acid phosphatase	+	3.1.3.2
[Ref.: #25295]	alkaline phosphatase	+	3.1.3.1
[Ref.: #25295]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #25295]	alpha-galactosidase	-	3.2.1.22
[Ref.: #25295]	alpha-glucosidase	+	3.2.1.20
[Ref.: #25295]	alpha-mannosidase	-	3.2.1.24
[Ref.: #25295]	beta-galactosidase	-	3.2.1.23
[Ref.: #25295]	beta-glucosidase	+	3.2.1.21
[Ref.: #25295]	beta-glucuronidase	+	3.2.1.31
[Ref.: #25295]	catalase	+	1.11.1.6
[Ref.: #25295]	cystine arylamidase	+	3.4.11.3
[Ref.: #25295]	cytochrome oxidase	+	1.9.3.1
[Ref.: #25295]	esterase (C 4)	+
[Ref.: #25295]	esterase Lipase (C 8)	+
[Ref.: #25295]	leucine arylamidase	+	3.4.11.1
[Ref.: #25295]	lipase (C 14)	+
[Ref.: #25295]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #25295]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #25295]	trypsin	+	3.4.21.4
[Ref.: #25295]	urease	-	3.5.1.5
[Ref.: #25295]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #25295]

Fatty acid	Percentage
C15:0 anteiso	51.1
C17:0 anteiso	16.1
C16:0 iso	14.3
C18:1ω7c / C18:1ω6c	8.2
C17:1 iso ω10c	2.1
C16:0	1.7
C17:0 iso	1.3
C15:1ω5c	1.1
C14:0 iso	1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #25295]	Sample type/isolated from	agarwood sample collected at Nantou County
[Ref.: #25295]	Geographic location (country and/or sea, region)	Nantou County, Taiwan
[Ref.: #25295]	Country	Taiwan
[Ref.: #25295]	Country ISO 3 Code	TWN
[Ref.: #25295]	Continent	Asia
[Ref.: #25295]	Geographic location	24.0770°/121.0660°

[Ref.: #67770]	Sample type/isolated from	Agarwood chip
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Tree
#Host Body-Site	-	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KU248164 (>99% sequence identity) for Microbacteriaceae from Microbeatlas

Aquatic Samples	59
Soil Samples	45
Animal Samples	160
Plant Samples	61
Total Samples	325

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #25295]	16S rRNA gene sequences	KU248164	1410	ENA	1848970 tax ID

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GC-content

67 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

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Culture collection no.

BCRC 80936, JCM 31199

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Humibacter aquilariae sp. nov., an actinobacterium isolated from an agarwood chip.	Lin SY, Hameed A, Liu YC, Hsu YH, Hsieh YT, Lai WA, Young CC	Int J Syst Evol Microbiol	10.1099/ijsem.0.001740	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#25295

S. Y. H. Lin, A.,Liu, Y. C.,Hsu, Y. H.,Hsieh, Y. T.,Lai, W. A.,Young, C. C.: Humibacter aquilariae sp. nov., an actinobacterium isolated from an agarwood chip. IJSEM 67: 1468 - 1472 2017 ( DOI 10.1099/ijsem.0.001740 , PubMed 27983468 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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