Name: Nocardia xestospongiae ST01-07
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133101

Type strain:

Species: Nocardia xestospongiae

Strain Designation: ST01-07

Culture col. no.: BCC 45622, NBRC 109069

NCBI tax ID(s): 1522140 (species)

Section

Nocardia xestospongiae ST01-07 is an aerobe, Gram-positive bacterium that builds a globose bodies and rod-shaped elements directly on the substrate mycelium and has a yellowish-brown pigmentation.

Gram-positive
pigmented
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Mycobacteriales*
	Family	*Nocardiaceae*
	Genus	*Nocardia*
	Species	**Nocardia xestospongiae**
	Full Scientific Name (LPSN)	Nocardia xestospongiae Thawai et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #25298]	Gram stain	positive

[Ref.: #25298]	Motility	no

[Ref.: #25298]	Colony color	greyish-yellow to dark greyish-yellow
[Ref.: #25298]	Cultivation medium used	ISP2 seawater agar

[Ref.: #25298]	Colony color	light orange yellow
[Ref.: #25298]	Cultivation medium used	ISP3

[Ref.: #25298]	Colony color	light orange yellow
[Ref.: #25298]	Cultivation medium used	ISP4

[Ref.: #25298]	Colony color	light orange yellow
[Ref.: #25298]	Cultivation medium used	ISP6

[Ref.: #25298]	Colony color	light orange yellow
[Ref.: #25298]	Cultivation medium used	ISP7

[Ref.: #25298]	Colony color	pale orange yellow to light orange yellow
[Ref.: #25298]	Cultivation medium used	ISP5

[Ref.: #25298]	Colony color	pale orange yellow to light orange yellow
[Ref.: #25298]	Cultivation medium used	NA (Nutrient Agar)

[Ref.: #25298]	Colony color	light orange yellow to moderate orange yellow
[Ref.: #25298]	Cultivation medium used	Czapek's sucrose and glucose-asparagine agar

[Ref.: #25298]	Pigment production	yes
[Ref.: #25298]	Pigmentation color	yellowish-brown

[Ref.: #25298]	Multicellular complex forming ability	yes
[Ref.: #25298]	Multicellular complex name	globose bodies and rod-shaped elements directly on the substrate mycelium

Information on culture and growth conditions Culture and growth conditions

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Culture medium

ISP2 seawater agar

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Culture medium growth

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Culture medium

ISP3

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Culture medium growth

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Culture medium

ISP4

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Culture medium growth

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Culture medium

ISP6

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Culture medium growth

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Culture medium

ISP7

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Culture medium growth

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Culture medium

ISP5

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Culture medium growth

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Culture medium

NA (Nutrient Agar)

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Culture medium growth

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Culture medium

Czapek's sucrose and glucose-asparagine agar

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Culture medium growth

	Kind of temperature		Temperature
[Ref.: #25298]		growth	20-40 °C
[Ref.: #25298]		optimum	30 °C
[Ref.: #25298]	no	growth	45 °C

[Ref.: #25298]	Temperature range	mesophilic
[Ref.: #25298]	Temperature range	thermophilic

	Kind of pH		pH
[Ref.: #25298]		optimum	8
[Ref.: #25298]		growth	6-12
[Ref.: #25298]	no	growth	5

Information on physiology and metabolism Physiology and metabolism

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Oxygen tolerance

aerobe

	Salt		Salt conc.
[Ref.: #25298]	NaCl	optimum	4	%
[Ref.: #25298]	NaCl	growth	0-7	%(w/v)
[Ref.: #25298]	NaCl	maximum	7	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #25298]	cellobiose ChEBI	+	builds acid from
[Ref.: #25298]	D-fructose ChEBI	+	builds acid from
[Ref.: #25298]	D-galactose ChEBI	+	builds acid from
[Ref.: #25298]	D-ribose ChEBI	+	builds acid from
[Ref.: #25298]	D-sorbose ChEBI	+	builds acid from
[Ref.: #25298]	D-xylose ChEBI	-	builds acid from
[Ref.: #25298]	gelatin ChEBI	-	degradation
[Ref.: #25298]	milk	-	degradation
[Ref.: #25298]	milk	+
[Ref.: #25298]	nitrate ChEBI	+	reduction
[Ref.: #25298]	salicin ChEBI	-	builds acid from
[Ref.: #25298]	starch ChEBI	-	hydrolysis
[Ref.: #25298]	sucrose ChEBI	+	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity
[Ref.: #25298]	amikacin ChEBI	yes
[Ref.: #25298]	ciprofloxacin ChEBI	yes
[Ref.: #25298]	clarithromycin ChEBI	yes
[Ref.: #25298]	imipenem ChEBI	yes
[Ref.: #25298]	linezolid ChEBI	yes
[Ref.: #25298]	minocycline ChEBI	yes

Fatty acid profile

Metadata FA analysis

Reference

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Fatty acid	Percentage
C17:1ω8c	21.8
C16:0	20.5
C17:0	14.2
C16:1ω7c	9.2
C18:1ω9c	8.2
10-Methyl C17:0	7.7
C18:0	5.6
C15:1ω5c	3.4
10-Methyl C18:0	3.4
C19:0	1.8
C16:0 iso	1.5
C14:0	1.3
10-Methyl C16:0	0.6
C19:1ω9c	0.5
C20:1ω7c	0.3

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #25298]	Sample type/isolated from	a marine sponge (Xestospongia sp.) collected from the Andaman Sea
[Ref.: #25298]	Geographic location (country and/or sea, region)	Andaman Sea, Phuket Province, Thailand
[Ref.: #25298]	Country	Thailand
[Ref.: #25298]	Country ISO 3 Code	THA
[Ref.: #25298]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Host	#Invertebrates (Other)	#Porifera (Sponges)

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #25298]	16S rRNA gene and gyrB sequences	AB973878	1399	ENA	1522140 tax ID
[Ref.: #25298]	16S rRNA gene and gyrB sequences	LC169506	1010	ENA	1522140 tax ID

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GC-content

70.2 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

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Culture collection no.

BCC 45622, NBRC 109069

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Nocardia xestospongiae sp. nov., isolated from a marine sponge in the Andaman Sea.	Thawai C, Rungjindamai N, Klanbut K, Tanasupawat S	Int J Syst Evol Microbiol	10.1099/ijsem.0.001736	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#25298

C. R. Thawai, N.,Klanbut, K.,Tanasupawat, S.: Nocardia xestospongiae sp. nov., isolated from a marine sponge in the Andaman Sea. IJSEM 67: 1451 - 1456 2017 ( DOI 10.1099/ijsem.0.001736 , PubMed 27974088 )

* These data were automatically processed and therefore are not curated

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