Name: Chelatococcus composti PC-2
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133085

Type strain:

Species: Chelatococcus composti

Strain Designation: PC-2

Culture col. no.: DSM 101465, CGMCC 1.15283

Strain history: <- Z. Zhang, Nanjing Institute of Environmental Sciences, Key Lab on Biosafety of National Environmental Protection; PC-2 <- Z. Zhang and J. Zhao, Nanjing Institute of Environmental Sciences, Key Lab on Biosafety of National Environmental Protection

NCBI tax ID(s): 1743235 (species)

SI-ID 397583

DSM 101465

Section

Chelatococcus composti PC-2 is a Gram-negative, motile, rod-shaped bacterium that forms circular colonies and was isolated from co-compost of penicillin fermentation fungi residue and pig manure.

colony-forming
Gram-negative
motile
rod-shaped
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Chelatococcaceae*
	Genus	*Chelatococcus*
	Species	**Chelatococcus composti**
	Full Scientific Name (LPSN)	Chelatococcus composti Zhang et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #25241]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.995

[Ref.: #25241]	Cell length	1.8-2.8 µm

[Ref.: #25241]	Cell width	0.8-1.0 µm

[Ref.: #25241]	Cell shape	rod-shaped

[Ref.: #25241]	Motility	yes

[Ref.: #25241]	Flagellum arrangement	polar

[Ref.: #25241]	Colony size	0.8-2.0 mm
[Ref.: #25241]	Colony color	moderately yellow
[Ref.: #25241]	Colony shape	circular
[Ref.: #25241]	Incubation period	2 days
[Ref.: #25241]	Cultivation medium used	LB

Information on culture and growth conditions Culture and growth conditions

[Ref.: #25241]

Culture medium

LB (Luria-Bertani) MEDIUM

[Ref.: #25241]

Culture medium growth

[Ref.: #24873]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #24873]

Culture medium growth

[Ref.: #24873]

Culture medium link

Medium recipe at MediaDive

[Ref.: #24873]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #24873]	growth	40 °C
[Ref.: #25241]	optimum	35-40 °C
[Ref.: #25241]	growth	20-60 °C

[Ref.: #24873]

Temperature range

thermophilic

	pH	Kind of pH		pH
[Ref.: #25241]			optimum	7.5-8.0
[Ref.: #25241]			growth	5.5-10.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.997

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #25241]		NaCl		growth	0-4	%(w/v)
[Ref.: #25241]		NaCl		optimum	0-1	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #25241]	2-oxobutanoate ChEBI	+	assimilation
[Ref.: #25241]	3-O-methyl-D-glucose ChEBI	-	assimilation
[Ref.: #25241]	cellobiose ChEBI	-	builds acid from
[Ref.: #25241]	D-arabitol ChEBI	-	assimilation
[Ref.: #25241]	D-fucose ChEBI	-	builds acid from
[Ref.: #25241]	D-galactose ChEBI	+	assimilation
[Ref.: #25241]	D-galacturonic acid ChEBI	+	assimilation
[Ref.: #25241]	D-glucose ChEBI	+	assimilation
[Ref.: #25241]	D-glucuronate ChEBI	+	assimilation
[Ref.: #25241]	D-mannitol ChEBI	-	assimilation
[Ref.: #25241]	D-sorbitol ChEBI	-	assimilation
[Ref.: #25241]	D-trehalose ChEBI	-	assimilation
[Ref.: #25241]	esculin ChEBI	+	builds acid from
[Ref.: #25241]	fructose ChEBI	+	builds acid from
[Ref.: #25241]	gelatin ChEBI	-	hydrolysis
[Ref.: #25241]	gentiobiose ChEBI	-	assimilation
[Ref.: #25241]	gluconate ChEBI	-	assimilation
[Ref.: #25241]	glucose ChEBI	+	builds acid from
[Ref.: #25241]	glycerol ChEBI	-	assimilation
[Ref.: #25241]	L-alanine ChEBI	-	assimilation
[Ref.: #25241]	L-fucose ChEBI	-	assimilation
[Ref.: #25241]	L-glutamate ChEBI	+	assimilation
[Ref.: #25241]	L-histidine ChEBI	+	assimilation
[Ref.: #25241]	L-proline ChEBI	-	assimilation
[Ref.: #25241]	L-rhamnose ChEBI	-	assimilation
[Ref.: #25241]	L-serine ChEBI	+	assimilation
[Ref.: #25241]	lactate ChEBI	-	assimilation
[Ref.: #25241]	malonate ChEBI	+	assimilation
[Ref.: #25241]	maltose ChEBI	-	assimilation
[Ref.: #25241]	mannitol ChEBI	-	assimilation
[Ref.: #25241]	mannitol ChEBI	-	builds acid from
[Ref.: #25241]	methyl D-glucoside ChEBI	-	assimilation
[Ref.: #25241]	myo-inositol ChEBI	+	builds acid from
[Ref.: #25241]	N-acetylglucosamine ChEBI	-	assimilation
[Ref.: #25241]	nitrate ChEBI	-	reduction
[Ref.: #25241]	propionate ChEBI	+	assimilation
[Ref.: #25241]	raffinose ChEBI	-	assimilation
[Ref.: #25241]	rhamnose ChEBI	-	builds acid from
[Ref.: #25241]	salicin ChEBI	-	assimilation
[Ref.: #25241]	sorbitol ChEBI	+	builds acid from
[Ref.: #25241]	starch ChEBI	-	hydrolysis
[Ref.: #25241]	sucrose ChEBI	-	assimilation
[Ref.: #25241]	turanose ChEBI	-	assimilation
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #25241]		acetoin ChEBI	no
[Ref.: #25241]		indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #25241]		acetoin ChEBI	-

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #25241]		catalase	+	1.11.1.6
[Ref.: #25241]		cytochrome oxidase	+	1.9.3.1

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #25241]

Fatty acid	Percentage
C18:1ω7c	50.7
cyclo-C19:0	22.3
C18:1 2OH	6.9
C18:0 3OH	4.8
C14:0	4.6
C16:0	3.4
C18:0	2.8

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24873]	Sample type/isolated from	co-compost of penicillin fermentation fungi residue and pig manure
[Ref.: #24873]	Geographic location (country and/or sea, region)	HengXi, Nanjing city (N31° 43' E118° 45')
[Ref.: #24873]	Country	China
[Ref.: #24873]	Country ISO 3 Code	CHN
[Ref.: #24873]	Continent	Asia
[Ref.: #24873]	Geographic location	31.7167°/118.7500°

[Ref.: #25241]	Sample type/isolated from	penicillin fermentation fungi residue with pig manure co-compost
* marker position based on {}

Isolation sources categories

#Engineered	#Biodegradation	#Composting
#Host	#Fungi	-
#Host	#Mammals	#Suidae (Pig,Swine)
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KP994349 (>99% sequence identity) for Chelatococcus from Microbeatlas

Aquatic Samples	84
Soil Samples	359
Animal Samples	150
Plant Samples	41
Total Samples	634

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #24873]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #24873]	Chelatococcus composti strain PC-2 16S ribosomal RNA gene, partial sequence	KP994349	1475	ENA	1743235 tax ID

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Chelatococcus composti DSM 101465	2861150374	draft	JGI IMG/M	1743235 tax ID	*
[Ref.: #66792]	Chelatococcus composti CGMCC 1.15283	GCA_014641535	scaffold	GenBank	1743235 tax ID	*
[Ref.: #66792]	Chelatococcus composti DSM 101465	GCA_014201415	contig	GenBank	1743235 tax ID	*
[Ref.: #66792]	Chelatococcus composti strain CGMCC 1.15283	1743235.4	wgs	PATRIC	1743235 tax ID	*
[Ref.: #66792]	Chelatococcus composti strain DSM 101465	1743235.5	wgs	PATRIC	1743235 tax ID	*
[Ref.: #66792]	Chelatococcus composti strain DSM 101465	1743235.3	wgs	PATRIC	1743235 tax ID	*

[Ref.: #24873]

GC-content

70.9 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Chelatococcus composti CGMCC 1.15283 NCBI: GCA_014641535.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Chelatococcus composti CGMCC 1.15283 NCBI: GCA_014641535.1
[Ref.: #69480]	flagellated	no	66.126	no
[Ref.: #69480]	gram-positive	no	98.642	no
[Ref.: #69480]	anaerobic	no	98.145	no
[Ref.: #69480]	aerobic	yes	90.749	no
[Ref.: #69480]	halophile	no	86.9	no
[Ref.: #69480]	spore-forming	no	94.334	no
[Ref.: #69480]	thermophile	no	80.637	no
[Ref.: #69480]	glucose-util	yes	88.148	yes
[Ref.: #69480]	motile	yes	87.219	yes
[Ref.: #69480]	glucose-ferment	no	90.511	no

Availability in culture collections External links

[Ref.: #24873]

Culture collection no.

DSM 101465, CGMCC 1.15283

[Ref.: #91350]

SI-ID 397583

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Salinarimonas soli sp. nov., isolated from soil.	Jin CZ, Jin L, Liu MJ, Kang MK, Park SH, Park DJ, Kim CJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.005095	2022	*
Enzymology	Acesulfame aerobic biodegradation by enriched consortia and Chelatococcus spp.: Kinetics, transformation products, and genomic characterization.	Huang Y, Deng Y, Law JC, Yang Y, Ding J, Leung KS, Zhang T	Water Res	10.1016/j.watres.2021.117454	2021	*
Phylogeny	Chelatococcus composti sp. nov., isolated from penicillin fermentation fungi residue with pig manure co-compost.	Zhang Z, Zhao J, Yu C, Dong S, Duan H, Yu R, Liu Y, Wang C	Int J Syst Evol Microbiol	10.1099/ijsem.0.001651	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24873

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 101465

#25241

Z. Z. Zhang, Juan,Yu, Cigang,Dong, Shanshan,Duan, Huiyin,Yu, Ran,Liu, Yan,Wang, Changyong: Chelatococcus composti sp. nov., isolated from penicillin fermentation fungi residue with pig manure co-compost. IJSEM 67: 565 - 569 2017 ( DOI 10.1099/ijsem.0.001651 , PubMed 27902244 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#91350

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID397583.1 )

* These data were automatically processed and therefore are not curated

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Chelatococcus composti CGMCC 1.15283

Chelatococcus composti CGMCC 1.15283

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