Name: Deinococcus budaensis FeSTC15-38
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 133034

Type strain:

Species: Deinococcus budaensis

Strain Designation: FeSTC15-38

Culture col. no.: DSM 101791, NCAIM B.02630

Strain history: <- J. Makk, Eötvös Loránd Univ., Microbiology, Budapest, Hungary; FeSTC15-38

NCBI tax ID(s): 1665626 (species)

SI-ID 406501

DSM 101791

Special Collections

Section

Deinococcus budaensis FeSTC15-38 is an aerobe, Gram-negative, sphere-shaped bacterium that forms circular colonies and was isolated from biofilm from a hydrothermal spring cave wall.

colony-forming
Gram-negative
sphere-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Deinococcota*
	Class	*Deinococci*
	Order	*Deinococcales*
	Family	*Deinococcaceae*
	Genus	*Deinococcus*
	Species	**Deinococcus budaensis**
	Full Scientific Name (LPSN)	Deinococcus budaensis Makk et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #25080]	Gram stain	negative

[Ref.: #25080]	Cell length	1.8 µm

[Ref.: #25080]	Cell width	1 µm

[Ref.: #25080]	Cell shape	sphere-shaped

[Ref.: #25080]	Motility	no

[Ref.: #25080]	Colony size	1.0-2.0 mm
[Ref.: #25080]	Colony color	pale pink
[Ref.: #25080]	Colony shape	circular
[Ref.: #25080]	Incubation period	3 days
[Ref.: #25080]	Cultivation medium used	Sphaerotilus-Leptothrix

Information on culture and growth conditions Culture and growth conditions

[Ref.: #25080]

Culture medium

Sphaerotilus-Leptothrix agar

[Ref.: #25080]

Culture medium growth

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Culture medium

glycerol-yeast extract-peptone medium

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Culture medium growth

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Culture medium

Reasoner's 2A agar (R2A)

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Culture medium growth

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Culture medium

TGY medium

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Culture medium growth

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Culture medium

Sphaerotilus-Leptothrix

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Culture medium growth

[Ref.: #24822]

Culture medium

GLYCEROL-YEAST EXTRACT-PEPTONE MEDIUM (DSMZ Medium 1484)

[Ref.: #24822]

Culture medium growth

[Ref.: #24822]

Culture medium link

Medium recipe at MediaDive

[Ref.: #24822]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #24822]	growth	28 °C
[Ref.: #25080]	growth	20.0-37.0 °C
[Ref.: #25080]	optimum	28 °C

	pH	Kind of pH		pH
[Ref.: #25080]			optimum	7
[Ref.: #25080]			growth	6.0-9.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #25080]

Oxygen tolerance

aerobe

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Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #25080]		NaCl	no	growth	>1.0	%

[Ref.: #25080]	Murein short key	A21.01
[Ref.: #25080]	Murein types	A3ß L-Orn-Gly₂_-₃

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #25080]	adipate ChEBI	-	assimilation
[Ref.: #25080]	alanine ChEBI	-	carbon source
[Ref.: #25080]	casein	-	hydrolysis
[Ref.: #25080]	D-fructose ChEBI	+	carbon source
[Ref.: #25080]	D-galactose ChEBI	+	carbon source
[Ref.: #25080]	D-glucose ChEBI	-	fermentation
[Ref.: #25080]	D-glucose ChEBI	-	builds acid from
[Ref.: #25080]	D-glucose ChEBI	-	assimilation
[Ref.: #25080]	D-glucose ChEBI	-	carbon source
[Ref.: #25080]	D-mannitol ChEBI	-	assimilation
[Ref.: #25080]	D-mannose ChEBI	-	assimilation
[Ref.: #25080]	D-mannose ChEBI	-	carbon source
[Ref.: #25080]	D-rhamnose ChEBI	-	carbon source
[Ref.: #25080]	D-ribose ChEBI	-	carbon source
[Ref.: #25080]	D-xylose ChEBI	-	carbon source
[Ref.: #25080]	esculin ChEBI	-	hydrolysis
[Ref.: #25080]	gelatin ChEBI	-	hydrolysis
[Ref.: #25080]	gelatin ChEBI	+	degradation
[Ref.: #25080]	glycerol ChEBI	-	carbon source
[Ref.: #25080]	hexanoate ChEBI	-	assimilation
[Ref.: #25080]	L-arabinose ChEBI	-	assimilation
[Ref.: #25080]	L-arabinose ChEBI	-	carbon source
[Ref.: #25080]	L-asparagine ChEBI	-	carbon source
[Ref.: #25080]	L-glutamine ChEBI	-	carbon source
[Ref.: #25080]	lactose ChEBI	-	carbon source
[Ref.: #25080]	malate ChEBI	-	assimilation
[Ref.: #25080]	maltose ChEBI	-	assimilation
[Ref.: #25080]	maltose ChEBI	+	carbon source
[Ref.: #25080]	myo-inositol ChEBI	-	carbon source
[Ref.: #25080]	N-acetylglucosamine ChEBI	-	assimilation
[Ref.: #25080]	nitrate ChEBI	-	reduction
[Ref.: #25080]	nitrite ChEBI	-	reduction
[Ref.: #25080]	phenylacetate ChEBI	-	assimilation
[Ref.: #25080]	potassium gluconate ChEBI	-	assimilation
[Ref.: #25080]	sodium acetate ChEBI	+	carbon source
[Ref.: #25080]	sodium citrate ChEBI	-	assimilation
[Ref.: #25080]	sodium citrate ChEBI	-	carbon source
[Ref.: #25080]	sodium pyruvate ChEBI	+	carbon source
[Ref.: #25080]	starch ChEBI	-	hydrolysis
[Ref.: #25080]	sucrose ChEBI	-	carbon source
[Ref.: #25080]	trehalose ChEBI	-	carbon source
[Ref.: #25080]	tryptophan ChEBI	-	energy source
[Ref.: #25080]	tween 80 ChEBI	-	hydrolysis
[Ref.: #25080]	urea ChEBI	-	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #25080]	acetoin ChEBI	no
[Ref.: #25080]	hydrogen sulfide ChEBI	no
[Ref.: #25080]	indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #25080]		acetoin ChEBI	-
[Ref.: #25080]		indole ChEBI		-

	Enzyme	Enzyme activity	EC number
[Ref.: #25080]	acid phosphatase	+	3.1.3.2
[Ref.: #25080]	alkaline phosphatase	+	3.1.3.1
[Ref.: #25080]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #25080]	alpha-fucosidase	-	3.2.1.51
[Ref.: #25080]	alpha-galactosidase	-	3.2.1.22
[Ref.: #25080]	alpha-glucosidase	+	3.2.1.20
[Ref.: #25080]	alpha-mannosidase	-	3.2.1.24
[Ref.: #25080]	arginine dihydrolase	+	3.5.3.6
[Ref.: #25080]	beta-glucosidase	-	3.2.1.21
[Ref.: #25080]	beta-glucuronidase	+	3.2.1.31
[Ref.: #25080]	catalase	+	1.11.1.6
[Ref.: #25080]	cystine arylamidase	-	3.4.11.3
[Ref.: #25080]	cytochrome oxidase	-	1.9.3.1
[Ref.: #25080]	esterase (C 4)	+
[Ref.: #25080]	esterase Lipase (C 8)	+
[Ref.: #25080]	leucine arylamidase	+	3.4.11.1
[Ref.: #25080]	lipase (C 14)	-
[Ref.: #25080]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #25080]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #25080]	phosphatase	-
[Ref.: #25080]	trypsin	-	3.4.21.4
[Ref.: #25080]	tryptophan deaminase	-	4.1.99.1
[Ref.: #25080]	urease	+	3.5.1.5
[Ref.: #25080]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24822]	Sample type/isolated from	biofilm from a hydrothermal spring cave wall
[Ref.: #24822]	Geographic location (country and/or sea, region)	Budapest, Gellért Hill, Rudas-Török spring cave (47.489° N 19.046° E)
[Ref.: #24822]	Country	Hungary
[Ref.: #24822]	Country ISO 3 Code	HUN
[Ref.: #24822]	Continent	Europe
[Ref.: #24822]	Geographic location	47.4890°/19.0460°

[Ref.: #25080]	Enrichment culture	Sphaerotilus-Leptothrix agar plates; pH 7.0 (DSMZ Medium 803)
[Ref.: #25080]	Enrichment culture composition	l-1: 1.0 g yeast extract, 1.5 g peptone, 0.2 g MgSO4.7H2O, 0.05 g CaCl2 , 0.50 g (NH4)5Fe(C6H4O7)2 , 0.05 g MnSO4 .4H2O, 0.01 g FeCl2 .6H2O and 20.0 g agar
[Ref.: #25080]	Enrichment culture duration	5 days
[Ref.: #25080]	Enrichment culture temperature	28 ̊C
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Cave water
#Environmental	#Aquatic	#Thermal spring
#Environmental	#Biofilm	-
#Condition	#Thermophilic (>45°C)	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #24822]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #24822]	Deinococcus sp. FeSTC15-38 partial 16S rRNA gene, strain FeSTC15-38	LN864925	1448	GenBank ENA	1665626 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Deinococcus budaensis DSM 101791	GCA_014201885	scaffold	GenBank ENA	1665626 tax ID	*
[Ref.: #66792]	Deinococcus budaensis strain DSM 101791	1665626.3	wgs	PATRIC	1665626 tax ID	*
[Ref.: #66792]	Deinococcus budaensis DSM 101791	2861295632	draft	JGI IMG/M	1665626 tax ID	*

[Ref.: #24822]

GC-content

68.2 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Deinococcus budaensis DSM 101791 NCBI: GCA_014201885.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	60	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Deinococcus budaensis DSM 101791 NCBI: GCA_014201885.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	68.119	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	91.477	yes
[Ref.: #69480]	aerobic	aerobicⓘ	yes	80.885	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	72.811	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	80.815	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	75.69	no

Availability in culture collections External links

[Ref.: #24822]

Culture collection no.

DSM 101791, NCAIM B.02630

[Ref.: #91304]

SI-ID 406501

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Deinococcus budaensis sp. nov., a mesophilic species isolated from a biofilm sample of a hydrothermal spring cave.	Makk J, Toth EM, Anda D, Pal S, Schumann P, Kovacs AL, Madl-Szonyi J, Marialigeti K, Borsodi AK	Int J Syst Evol Microbiol	10.1099/ijsem.0.001519	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24822

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 101791

#25080

J. T. Makk, E. M.,Anda, D.,Pál, S.,Schumann, P.,Kovács, A. L.,Mádl-Szönyi, J.,Márialigeti, K.,Borsodi, A. K.: Deinococcus budaensis sp. nov., a mesophilic species isolated from a biofilm sample of a hydrothermal spring cave. IJSEM 66: 5345 - 5351 2016 ( DOI 10.1099/ijsem.0.001519 , PubMed 27667170 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#91304

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID406501.1 )

* These data were automatically processed and therefore are not curated

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Deinococcus budaensis DSM 101791

Deinococcus budaensis DSM 101791

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