Name: Dongia soli D78
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133005

Type strain:

Species: Dongia soli

Strain Designation: D78

Culture col. no.: DSM 29855, KACC 13941, LMG 2919

Strain history: <- D. Kim, SNUCM; D78

NCBI tax ID(s): 600628 (species)

SI-ID 400079

DSM 29855

Section

Dongia soli D78 is a mesophilic bacterium that was isolated from agricultural field.

mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodospirillales*
	Family	*Rhodospirillaceae*
	Genus	*Dongia*
	Species	**Dongia soli**
	Full Scientific Name (LPSN)	Dongia soli Kim et al. 2016

Information on culture and growth conditions Culture and growth conditions

[Ref.: #24793]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #24793]

Culture medium growth

[Ref.: #24793]

Culture medium link

Medium recipe at MediaDive

[Ref.: #24793]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #24793]			growth	28 °C

[Ref.: #24793]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24793]	Sample type/isolated from	agricultural field
[Ref.: #24793]	Geographic location (country and/or sea, region)	Dokdo
[Ref.: #24793]	Country	Republic of Korea
[Ref.: #24793]	Country ISO 3 Code	KOR
[Ref.: #24793]	Continent	Asia
[Ref.: #24793]	Geographic location	37.2367°/131.8690°
* marker position based on {}

Isolation sources categories

#Engineered

#Agriculture

#Field

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FJ654262 (>99% sequence identity) for Dongia soli subclade from Microbeatlas

Aquatic Samples	400
Soil Samples	4639
Animal Samples	390
Plant Samples	815
Total Samples	6244

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #24793]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #24793]	Dongia soli strain D78 16S ribosomal RNA gene, partial sequence	FJ654262	1430	ENA	600628 tax ID

[Ref.: #24793]

GC-content

54.7 mol%

fluorimetric

Availability in culture collections External links

[Ref.: #24793]

Culture collection no.

DSM 29855, KACC 13941, LMG 2919

[Ref.: #91280]

SI-ID 400079

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Dongia soli sp. nov., isolated from soil from Dokdo, Korea.	Kim DU, Lee H, Kim H, Kim SG, Ka JO	Antonie Van Leeuwenhoek	10.1007/s10482-016-0738-x	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24793

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 29855

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#91280

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID400079.1 )

* These data were automatically processed and therefore are not curated

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