Lacinutrix iliipiscaria (DSM 26284, JCM 18637, KCTC 32141)

Name: Lacinutrix iliipiscaria (DSM 26284, JCM 18637, KCTC 32141)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 133006

Type strain

Strain Designation Th68

Culture col. no. DSM 26284 JCM 18637 KCTC 32141 Th68

NCBI tax ID(s) 1230532

Special Collections DSMZ JCM KCTC Literature strains

History <- X.-H. Zhang, Ocean Univ. China, Dept. of Marine Biology, Qingdao, P. R. China; Th68 <- K. Tang X.-H. Zhang and Y. Zhang <-- K. Tang Th68. <- X-H Zhang, Ocean Univ. of China

Links

Lacinutrix iliipiscaria Th68 is an aerobe, chemoheterotroph, Gram-negative bacterium that was isolated from From intestine of cultured flounder `Paralichthys olivaceus`.

Gram-negative motile rod-shaped aerobe chemoheterotroph genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 406769

KCTC 32141,JCM 18637,DSM 26284

@ref 20215

Last LPSN update 2026-02-09 11:31:51

Domain Bacteria

Phylum Bacteroidota

Class Flavobacteriia

Order Flavobacteriales

Family Flavobacteriaceae

Genus Lacinutrix

Species Lacinutrix iliipiscaria

Full scientific name Lacinutrix iliipiscaria (Shakeela et al. 2015) Nedashkovskaya et al. 2016

Synonyms (1)

Flavirhabdus iliipiscaria

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Flagellum arrangement	Confidence
24984	negative	0.3-3.0 µm	0.2-0.8 µm	rod-shaped
67771				rod-shaped	gliding
67771	negative
125438						95
125438	negative					98.358
125439	negative					99.8

Pigmentation

@ref	Production	Name
24984		flexirubin type pigments

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
24794	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)		Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
24794	positive	growth	28
67770	positive	growth	30
67771	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
24984	aerobe
67771	aerobe
125439	obligate aerobe	99.6

Nutrition type

24984

Typechemoheterotroph

Spore formation

@ref	Spore formation	Confidence
24984
125438		91.218
125439		98.8

Observation

@ref	Observation
67770	quinones: MK-6
67771	quinones: MK-6

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
24984	28816 ChEBI	2-deoxy-d-ribose	-	builds acid from
24984	2509 ChEBI	agar	-	hydrolysis
24984		casein	+	hydrolysis
24984	17057 ChEBI	cellobiose	-	builds acid from
24984	17029 ChEBI	chitin	-	hydrolysis
24984	16947 ChEBI	citrate	-	carbon source
24984	15824 ChEBI	D-fructose	-	builds acid from
24984	17634 ChEBI	D-glucose	+	carbon source
24984	16899 ChEBI	D-mannitol	-	builds acid from
24984	16991 ChEBI	dna	-	hydrolysis
24984	4853 ChEBI	esculin	+	hydrolysis
24984	5291 ChEBI	gelatin	+	hydrolysis
24984	24265 ChEBI	gluconate	-	carbon source
24984	17234 ChEBI	glucose	-	builds acid from
24984	17754 ChEBI	glycerol	-	builds acid from
24984	30849 ChEBI	L-arabinose	-	builds acid from
24984	30849 ChEBI	L-arabinose	+	carbon source
24984	62345 ChEBI	L-rhamnose	-	builds acid from
24984	17716 ChEBI	lactose	-	builds acid from
24984	17716 ChEBI	lactose	-	carbon source
24984	17306 ChEBI	maltose	-	builds acid from
24984	17306 ChEBI	maltose	+	carbon source
24984	29864 ChEBI	mannitol	+	carbon source
24984	37684 ChEBI	mannose	-	builds acid from
24984	37684 ChEBI	mannose	+	carbon source
24984	17632 ChEBI	nitrate	+	reduction
24984	16634 ChEBI	raffinose	-	builds acid from
24984	30911 ChEBI	sorbitol	-	carbon source
24984	28017 ChEBI	starch	-	hydrolysis
24984	17992 ChEBI	sucrose	-	builds acid from
24984	17992 ChEBI	sucrose	+	carbon source
24984	27897 ChEBI	tryptophan	+	energy source
24984	53424 ChEBI	tween 20	+	hydrolysis
24984	53423 ChEBI	tween 40	-	hydrolysis
24984	53426 ChEBI	tween 80	-	hydrolysis
24984	16199 ChEBI	urea	+	hydrolysis

Antibiotic resistance

@ref	ChEBI	Metabolite
24984	28971	ampicillin
24984	3393	carbenicillin
24984	474053	cefazolin
24984	3534	cephalexin
24984	17698	chloramphenicol
24984	50845	doxycycline
24984	48923	erythromycin
24984	17833	gentamicin
24984	6104	kanamycin
24984	6472	lincomycin
24984	100147	nalidixic acid
24984	7507	neomycin
24984	7731	ofloxacin
24984	16869	oleandomycin
24984	7809	oxacillin
24984	18208	penicillin g
24984	59062	polymyxin
24984	28077	rifampicin
24984	17076	streptomycin
24984	27902	tetracycline
24984	28001	vancomycin

Metabolite production

@ref	Chebi-ID	Metabolite
24984	15688 ChEBI	acetoin
24984	16136 ChEBI	hydrogen sulfide
24984	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Citrate test	Indole test
24984	16947 ChEBI	citrate	-
24984	35581 ChEBI	indole		+

Enzymes

@ref	Value	Activity	Ec
24984	acid phosphatase	-	3.1.3.2
24984	alkaline phosphatase	+	3.1.3.1
24984	alpha-chymotrypsin	-	3.4.21.1
24984	alpha-galactosidase	-	3.2.1.22
24984	alpha-glucosidase	-	3.2.1.20
24984	beta-galactosidase	-	3.2.1.23
24984	beta-glucosidase	-	3.2.1.21
24984	catalase	+	1.11.1.6
24984	cystine arylamidase	-	3.4.11.3
24984	cytochrome oxidase	+	1.9.3.1
24984	esterase (C 4)	-
24984	esterase Lipase (C 8)	-
24984	leucine arylamidase	-	3.4.11.1
24984	lipase (C 14)	-
24984	N-acetyl-beta-glucosaminidase	-	3.2.1.52
24984	naphthol-AS-BI-phosphohydrolase	-
24984	trypsin	+	3.4.21.4
24984	tryptophan deaminase	+	4.1.99.1
24984	valine arylamidase	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Host	#Fishes
#Host Body-Site	#Gastrointestinal tract

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent
67771	From intestine of cultured flounder `Paralichthys olivaceus`		Shandong Province	China	CHN	Asia
24794	intestine of flounder Paralichthys olivaceus	Paralichthys olivaceus	Shandong Province	China	CHN	Asia
67770	Intestine of cultured flounder (Paralichthys olivaceus) collected from a fish farm in Shandong Province	Paralichthys olivaceus		China	CHN	Asia

Taxonmaps

69479

Global distribution of 16S sequence JX412960 (>99% sequence identity) for Lacinutrix iliipiscaria subclade from Microbeatlas

Aquatic Samples	76
Soil Samples	13
Animal Samples	9
Plant Samples	1
Total Samples	99

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
24794	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	IMG accession	NCBI tax ID	Score	BV-BRC accession	INSDC accession
66792	Lacinutrix iliipiscaria DSM 26284	complete	2861378864	1230532	94.88
66792	Lacinutrix iliipiscaria strain DSM 26284	contig		1230532	75.8	1230532.3
124043	ASM4268612v1 assembly for Lacinutrix iliipiscaria KCTC 32141	scaffold		1230532	73.59		GCA_042686125

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
24794	Lacinutrix iliipiscaria strain Th68 16S ribosomal RNA gene, partial sequence	JX412960	1486		1230532

GC content

@ref	GC-content (mol%)	Method
24984	32.5	thermal denaturation, midpoint method (Tm)
24794	33.0	high performance liquid chromatography (HPLC)
67770	33	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Lacinutrix iliipiscaria strain DSM 26284
PATRIC: 1230532.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.60	no
125439	gram_stain	BacteriaNetⓘ	negative	99.80	no
125439	motility	BacteriaNetⓘ	no	62.80	no
125439	spore_formation	BacteriaNetⓘ	no	98.80	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Lacinutrix iliipiscaria strain DSM 26284
PATRIC: 1230532.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.36	no
125438	anaerobic	anaerobicⓘ	no	96.55	yes
125438	spore-forming	spore-formingⓘ	no	91.22	yes
125438	aerobic	aerobicⓘ	yes	86.57	yes
125438	thermophilic	thermophileⓘ	no	96.89	yes
125438	flagellated	motile2+ⓘ	no	95.00	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Flavirhabdus iliipiscaria gen. nov., sp. nov., isolated from intestine of flounder (Paralichthys olivaceus) and emended descriptions of the genera Flavivirga, Algibacter, Bizionia and Formosa.	Shakeela Q, Shehzad A, Zhang Y, Tang K, Zhang XH	Int J Syst Evol Microbiol	10.1099/ijs.0.000110	2015

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#24794	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 26284
#24984	O. I. K. Nedashkovskaya, Song-Gun,Zhukova, Natalia V.,Lee, Jung-Sook,Mikhailov, Valery V.: Lacinutrix cladophorae sp. nov., a flavobacterium isolated from the green alga Cladophora stimpsonii, transfer of Flavirhabdus iliipiscaria Shakeela et al. 2015 to the genus Lacinutrix as Lacinutrix iliipiscaria comb. nov. and emended description of the genus Lacinutrix. IJSEM 66: 4339 - 4346 2016 ( DOI 10.1099/ijsem.0.001353 , PubMed 27473360 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Lacinutrix iliipiscaria (DSM 26284, JCM 18637, KCTC 32141)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Nutrition type

Spore formation

Observation

Metabolite utilization

Antibiotic resistance

Metabolite production

Metabolite tests

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_042686125

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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