Name: Edaphobacter aggregans Wbg-1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133

Type strain:

Species: Edaphobacter aggregans

Strain Designation: Wbg-1

Culture col. no.: DSM 19364, ATCC BAA-1497

Strain history: <- J. Overmann, LMU, München; Wbg-1 <- P. F. Dunfield, Wairakei Res. Centre, Taupo, New Zealand

NCBI tax ID(s): 1121860 (strain), 570835 (species)

SI-ID 398081

DSM 19364

Section

Edaphobacter aggregans Wbg-1 is a mesophilic, Gram-negative, rod-shaped bacterium that was isolated from protorendzina in a deciduous forest near Würzburg.

Gram-negative
rod-shaped
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Acidobacteriota*
	Class	*Terriglobia*
	Order	*Terriglobales*
	Family	*Acidobacteriaceae*
	Genus	*Edaphobacter*
	Species	**Edaphobacter aggregans**
	Full Scientific Name (LPSN)	Edaphobacter aggregans Koch et al. 2008

Information on morphological and physiological properties Morphology

[Ref.: #21411]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.935

[Ref.: #21411]	Cell length	1.5-2.1 µm

[Ref.: #21411]	Cell width	0.7-0.9 µm

[Ref.: #21411]	Cell shape	rod-shaped

[Ref.: #21411]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %93.811

[Ref.: #21411]	Colony color	beige
[Ref.: #21411]	Colony shape	circular
[Ref.: #21411]	Incubation period	14-21 days
[Ref.: #21411]	Cultivation medium used	agar-solidified media

[Ref.: #8075]	Incubation period	8-14 days

[Ref.: #21411]	Cultivation medium used	gellan gum media

Information on culture and growth conditions Culture and growth conditions

[Ref.: #8075]

Culture medium

HD-MEDIUM, 1:10 DILUTED, MODIFIED (DSMZ Medium 1135)

[Ref.: #8075]

Culture medium growth

[Ref.: #8075]

Culture medium link

Medium recipe at MediaDive

[Ref.: #8075]

Culture medium composition

expand / minimize

[Ref.: #21411]

Culture medium

SSE (pH 6.3) supplemented with 0.0025% yeast extract, 0.1% glucose and trace element solution SL10 (1 ml l21; Widdel et al., 1983) or in HD medium (1 : 10-diluted, containing 0.05% casein peptone, 0.01% glucose, 0.025% yeast extract, pH 7.0)

		Temperature
[Ref.: #8075]	growth	15-25 °C
[Ref.: #21411]	maximum	37 °C
[Ref.: #21411]	minimum	15 °C
[Ref.: #21411]	optimum	30 °C

[Ref.: #21411]	Temperature range	mesophilic
[Ref.: #21411]	Temperature range	psychrophilic
[Ref.: #21411]	Temperature range	mesophilic

		pH
[Ref.: #21411]	maximum	7
[Ref.: #21411]	minimum	4.5
[Ref.: #21411]	optimum	5.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Ability of spore formation

no Confidence in %99.777

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #21411]	(+)-D-galactose	-
[Ref.: #21411]	(+)-D-glucosamine	-
[Ref.: #21411]	(+)-D-mannose	-
[Ref.: #21411]	(+)-D-xylose	-
[Ref.: #21411]	(+)-L-aspartate	+
[Ref.: #21411]	(+)-L-glutamate	+
[Ref.: #21411]	(+)-L-lyxitol	-
[Ref.: #21411]	(+)-L-ornithine	+
[Ref.: #21411]	(+)-L-rhamnose	-
[Ref.: #21411]	(2)-D-fructose	-
[Ref.: #21411]	(2)-D-lactose	+
[Ref.: #21411]	(2)-D-lyxose	-
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #21411]	casamino acids (0.01 %, w/v)	+
[Ref.: #21411]	cellobiose ChEBI	-
[Ref.: #21411]	D-gluconate ChEBI	-
[Ref.: #68369]	D-glucose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #21411]	D-glucuronate ChEBI	+
[Ref.: #21411]	D-mannitol ChEBI	-
[Ref.: #68369]	D-mannitol ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	-	assimilation	* from API 20NE
[Ref.: #21411]	D-sorbitol ChEBI	-
[Ref.: #68369]	decanoate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	esculin ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #68369]	gelatin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	-	assimilation	* from API 20NE
[Ref.: #21411]	L-arabinose ChEBI	-
[Ref.: #68369]	L-arabinose ChEBI	-	assimilation	* from API 20NE
[Ref.: #21411]	L-glutamine ChEBI	+
[Ref.: #68369]	malate ChEBI	-	assimilation	* from API 20NE
[Ref.: #21411]	maltose ChEBI	-
[Ref.: #68369]	maltose ChEBI	-	assimilation	* from API 20NE
[Ref.: #21411]	myo-inositol ChEBI	-
[Ref.: #68369]	N-acetylglucosamine ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	nitrate ChEBI	-	reduction	* from API 20NE
[Ref.: #21411]	peptone (0.01 %, w/v)	+
[Ref.: #21411]	raffinose ChEBI	-
[Ref.: #21411]	succinate ChEBI	-
[Ref.: #21411]	trehalose ChEBI	-
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #21411]	xylitol ChEBI	-
[Ref.: #21411]	yeast extract (0.01 %, w/v)	+
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #68369]	beta-glucosidase	+	3.2.1.21	* from API 20NE
[Ref.: #8075]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68369]	cytochrome oxidase	-	1.9.3.1	* from API 20NE
[Ref.: #8075]	cytochrome-c oxidase	-	1.9.3.1
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #68369]	gelatinase	-		* from API 20NE
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #8075]	23812	-	-	-	-	-	+	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #21411]	1049	-	+	+	-	+	+	-	-	-	+	+	+	+	+	-	+	+	+	-	-
[Ref.: #8075]	13997	-	+/-	-	-	-	+	+/-	-	+/-	+/-	+	+/-	-	+/-	+	-	+/-	+	-	-

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	cellulose degradation	100	5 of 5
[Ref.: #66794]	threonine metabolism	100	10 of 10
[Ref.: #66794]	cis-vaccenate biosynthesis	100	2 of 2
[Ref.: #66794]	methylglyoxal degradation	100	5 of 5
[Ref.: #66794]	ppGpp biosynthesis	100	4 of 4
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	formaldehyde oxidation	100	3 of 3
[Ref.: #66794]	suberin monomers biosynthesis	100	2 of 2
[Ref.: #66794]	valine metabolism	100	9 of 9
[Ref.: #66794]	quinate degradation	100	2 of 2
[Ref.: #66794]	starch degradation	100	10 of 10
[Ref.: #66794]	cardiolipin biosynthesis	100	7 of 7
[Ref.: #66794]	palmitate biosynthesis	100	22 of 22
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	adipate degradation	100	2 of 2
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	propionate fermentation	90	9 of 10
[Ref.: #66794]	glutamate and glutamine metabolism	89.29	25 of 28
[Ref.: #66794]	NAD metabolism	88.89	16 of 18
[Ref.: #66794]	CO2 fixation in Crenarchaeota	88.89	8 of 9
[Ref.: #66794]	aspartate and asparagine metabolism	88.89	8 of 9
[Ref.: #66794]	d-mannose degradation	88.89	8 of 9
[Ref.: #66794]	allantoin degradation	88.89	8 of 9
[Ref.: #66794]	ketogluconate metabolism	87.5	7 of 8
[Ref.: #66794]	flavin biosynthesis	86.67	13 of 15
[Ref.: #66794]	ubiquinone biosynthesis	85.71	6 of 7
[Ref.: #66794]	phenylalanine metabolism	84.62	11 of 13
[Ref.: #66794]	1,4-dihydroxy-6-naphthoate biosynthesis	83.33	5 of 6
[Ref.: #66794]	purine metabolism	82.98	78 of 94
[Ref.: #66794]	pyrimidine metabolism	82.22	37 of 45
[Ref.: #66794]	pentose phosphate pathway	81.82	9 of 11
[Ref.: #66794]	peptidoglycan biosynthesis	80	12 of 15
[Ref.: #66794]	Entner Doudoroff pathway	80	8 of 10
[Ref.: #66794]	glycogen metabolism	80	4 of 5
[Ref.: #66794]	glycine betaine biosynthesis	80	4 of 5
[Ref.: #66794]	citric acid cycle	78.57	11 of 14
[Ref.: #66794]	photosynthesis	78.57	11 of 14
[Ref.: #66794]	molybdenum cofactor biosynthesis	77.78	7 of 9
[Ref.: #66794]	serine metabolism	77.78	7 of 9
[Ref.: #66794]	chorismate metabolism	77.78	7 of 9
[Ref.: #66794]	alanine metabolism	75.86	22 of 29
[Ref.: #66794]	glycogen biosynthesis	75	3 of 4
[Ref.: #66794]	CMP-KDO biosynthesis	75	3 of 4
[Ref.: #66794]	butanoate fermentation	75	3 of 4
[Ref.: #66794]	acetate fermentation	75	3 of 4
[Ref.: #66794]	isoleucine metabolism	75	6 of 8
[Ref.: #66794]	gluconeogenesis	75	6 of 8
[Ref.: #66794]	degradation of pentoses	75	21 of 28
[Ref.: #66794]	d-xylose degradation	72.73	8 of 11
[Ref.: #66794]	metabolism of disaccharids	72.73	8 of 11
[Ref.: #66794]	histidine metabolism	72.41	21 of 29
[Ref.: #66794]	degradation of hexoses	72.22	13 of 18
[Ref.: #66794]	degradation of sugar acids	72	18 of 25
[Ref.: #66794]	propanol degradation	71.43	5 of 7
[Ref.: #66794]	reductive acetyl coenzyme A pathway	71.43	5 of 7
[Ref.: #66794]	glutathione metabolism	71.43	10 of 14
[Ref.: #66794]	tyrosine metabolism	71.43	10 of 14
[Ref.: #66794]	glycolysis	70.59	12 of 17
[Ref.: #66794]	methionine metabolism	69.23	18 of 26
[Ref.: #66794]	leucine metabolism	69.23	9 of 13
[Ref.: #66794]	vitamin B1 metabolism	69.23	9 of 13
[Ref.: #66794]	cyanate degradation	66.67	2 of 3
[Ref.: #66794]	L-lactaldehyde degradation	66.67	2 of 3
[Ref.: #66794]	cysteine metabolism	66.67	12 of 18
[Ref.: #66794]	octane oxidation	66.67	2 of 3
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	acetyl CoA biosynthesis	66.67	2 of 3
[Ref.: #66794]	lipid A biosynthesis	66.67	6 of 9
[Ref.: #66794]	phenol degradation	65	13 of 20
[Ref.: #66794]	lipid metabolism	64.52	20 of 31
[Ref.: #66794]	tetrahydrofolate metabolism	64.29	9 of 14
[Ref.: #66794]	heme metabolism	64.29	9 of 14
[Ref.: #66794]	non-pathway related	63.16	24 of 38
[Ref.: #66794]	tryptophan metabolism	63.16	24 of 38
[Ref.: #66794]	degradation of sugar alcohols	62.5	10 of 16
[Ref.: #66794]	dTDPLrhamnose biosynthesis	62.5	5 of 8
[Ref.: #66794]	C4 and CAM-carbon fixation	62.5	5 of 8
[Ref.: #66794]	myo-inositol biosynthesis	60	6 of 10
[Ref.: #66794]	arginine metabolism	58.33	14 of 24
[Ref.: #66794]	polyamine pathway	56.52	13 of 23
[Ref.: #66794]	proline metabolism	54.55	6 of 11
[Ref.: #66794]	isoprenoid biosynthesis	53.85	14 of 26
[Ref.: #66794]	phenylpropanoid biosynthesis	53.85	7 of 13
[Ref.: #66794]	lysine metabolism	52.38	22 of 42
[Ref.: #66794]	phenylmercury acetate degradation	50	1 of 2
[Ref.: #66794]	coenzyme M biosynthesis	50	5 of 10
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	50	6 of 12
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	50	4 of 8
[Ref.: #66794]	glycolate and glyoxylate degradation	50	3 of 6
[Ref.: #66794]	selenocysteine biosynthesis	50	3 of 6
[Ref.: #66794]	sulfopterin metabolism	50	2 of 4
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	50	1 of 2
[Ref.: #66794]	kanosamine biosynthesis II	50	1 of 2
[Ref.: #66794]	ethanol fermentation	50	1 of 2
[Ref.: #66794]	glycine metabolism	50	5 of 10
[Ref.: #66794]	cyclohexanol degradation	50	2 of 4
[Ref.: #66794]	catecholamine biosynthesis	50	2 of 4
[Ref.: #66794]	pantothenate biosynthesis	50	3 of 6
[Ref.: #66794]	carnitine metabolism	50	4 of 8
[Ref.: #66794]	biotin biosynthesis	50	2 of 4
[Ref.: #66794]	3-phenylpropionate degradation	46.67	7 of 15
[Ref.: #66794]	sulfate reduction	46.15	6 of 13
[Ref.: #66794]	urea cycle	46.15	6 of 13
[Ref.: #66794]	arachidonic acid metabolism	44.44	8 of 18
[Ref.: #66794]	nitrate assimilation	44.44	4 of 9
[Ref.: #66794]	oxidative phosphorylation	43.96	40 of 91
[Ref.: #66794]	androgen and estrogen metabolism	43.75	7 of 16
[Ref.: #66794]	aclacinomycin biosynthesis	42.86	3 of 7
[Ref.: #66794]	vitamin K metabolism	40	2 of 5
[Ref.: #66794]	D-cycloserine biosynthesis	40	2 of 5
[Ref.: #66794]	arachidonate biosynthesis	40	2 of 5
[Ref.: #66794]	lipoate biosynthesis	40	2 of 5
[Ref.: #66794]	ethylmalonyl-CoA pathway	40	2 of 5
[Ref.: #66794]	ascorbate metabolism	36.36	8 of 22
[Ref.: #66794]	cholesterol biosynthesis	36.36	4 of 11
[Ref.: #66794]	vitamin B6 metabolism	36.36	4 of 11
[Ref.: #66794]	enterobactin biosynthesis	33.33	1 of 3
[Ref.: #66794]	sphingosine metabolism	33.33	2 of 6
[Ref.: #66794]	4-hydroxymandelate degradation	33.33	3 of 9
[Ref.: #66794]	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
[Ref.: #66794]	IAA biosynthesis	33.33	1 of 3
[Ref.: #66794]	carotenoid biosynthesis	31.82	7 of 22
[Ref.: #66794]	4-hydroxyphenylacetate degradation	30	3 of 10
[Ref.: #66794]	benzoyl-CoA degradation	28.57	2 of 7
[Ref.: #66794]	chlorophyll metabolism	27.78	5 of 18
[Ref.: #66794]	toluene degradation	25	1 of 4
[Ref.: #66794]	lactate fermentation	25	1 of 4
[Ref.: #66794]	alginate biosynthesis	25	1 of 4
[Ref.: #66794]	phosphatidylethanolamine bioynthesis	23.08	3 of 13
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #8075]	Sample type/isolated from	protorendzina (leptosol) in a deciduous forest near Würzburg
[Ref.: #8075]	Geographic location (country and/or sea, region)	northern Bavaria
[Ref.: #8075]	Country	Germany
[Ref.: #8075]	Country ISO 3 Code	DEU
[Ref.: #8075]	Continent	Europe

[Ref.: #21411]	Sample type/isolated from	Soil sample, protorendzina (leptosol), upper 8 bis 13 cm of Ah horizon
[Ref.: #21411]	Sampling date	2001-02-00
[Ref.: #21411]	Geographic location (country and/or sea, region)	deciduous forest near Würzburg (northern Bavaria)
[Ref.: #21411]	Country	Germany
[Ref.: #21411]	Country ISO 3 Code	DEU
[Ref.: #21411]	Continent	Europe
[Ref.: #21411]	Enrichment culture composition	soil crumbs were placed on agar plates ammonium mineral salts medium containing (per litre) 0.1 g NH4Cl, 0.2 g MgSO4 . 7H2O, 0.04 g CaCl2, 0.001 g sequestrene Fe [ethylenediaminedi(o-hydroxyphenylacetic) acid (Fe EDDHA)], 0.1 ml trace elements et al., 1970) and 10 ml sterile-filtered 100 mM NaH2PO4/ (Whittenbury Na2HPO4 buffer (pH 7.0), Incubation at 20 uC in a gastight chamber containing 20% (v/v) methane in air yielded large, slimy, semi-transparent masses composed primarilyof the ethane-oxidi
[Ref.: #21411]	Enrichment culture temperature	20 ̊C
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Forest
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence DQ528761 (>99% sequence identity) for Edaphobacter aggregans from Microbeatlas

Aquatic Samples	11
Soil Samples	270
Animal Samples	5
Plant Samples	19
Total Samples	305

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #8075]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #21411]	Biosafety level	1

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #8075]	Edaphobacter aggregans strain Wbg-1 16S ribosomal RNA gene, partial sequence	DQ528761	1425	ENA	1121860 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Edaphobacter aggregans DSM 19364	GCA_000745965	scaffold	GenBank	1121860 tax ID	*
[Ref.: #66792]	Edaphobacter aggregans DSM 19364	1121860.3	wgs	PATRIC	1121860 tax ID	*
[Ref.: #66792]	Edaphobacter aggregans DSM 19364	2571042012	draft	JGI IMG/M	1121860 tax ID	*

[Ref.: #21411]	GC-content	56.9 mol%
[Ref.: #8075]	GC-content	56.9 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Edaphobacter aggregans DSM 19364 DSM 19364 NCBI: GCA_000745965.1
[Ref.: #69481]	spore-forming	no	56	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Edaphobacter aggregans DSM 19364 DSM 19364 NCBI: GCA_000745965.1
[Ref.: #69480]	motile	no	81.71	yes
[Ref.: #69480]	flagellated	no	94.198	yes
[Ref.: #69480]	gram-positive	no	97.329	no
[Ref.: #69480]	anaerobic	no	97.683	no
[Ref.: #69480]	aerobic	yes	80.02	no
[Ref.: #69480]	halophile	no	96.729	no
[Ref.: #69480]	spore-forming	no	87.179	no
[Ref.: #69480]	thermophile	no	95.449	yes
[Ref.: #69480]	glucose-util	yes	62.404	yes
[Ref.: #69480]	glucose-ferment	no	91.054	yes

Availability in culture collections External links

[Ref.: #8075]

Culture collection no.

DSM 19364, ATCC BAA-1497

[Ref.: #69816]

SI-ID 398081

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Edaphobacter acidisoli sp. nov., an acidobacterium isolated from forest soil.	Xia F, Cai YM, Chen DX, Qiu LH	Int J Syst Evol Microbiol	10.1099/ijsem.0.002300	2017	*
Pathogenicity	Conjugative transfer of broad host range plasmids to an acidobacterial strain, Edaphobacter aggregans.	Bouhajja E, Efthymiopoulos T, George IF, Moreels D, Van Houdt R, Mergeay M, Agathos SN	J Biotechnol	10.1016/j.jbiotec.2016.01.025	2016	*
Phylogeny	Edaphobacter modestus gen. nov., sp. nov., and Edaphobacter aggregans sp. nov., acidobacteria isolated from alpine and forest soils.	Koch IH, Gich F, Dunfield PF, Overmann J	Int J Syst Evol Microbiol	10.1099/ijs.0.65303-0	2008	*

References

#8075

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19364

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21411

Koch I.H. , Gich F. , Dunfield P. F. , Overmann J.: Edaphobacter modestus gen. nov., sp. nov., and Edaphobacter aggregans sp. nov., acidobacteria isolated from alpine and forest soils. Syst Appl Microbiol. 58: 1114 - 1122 2008 ( DOI 10.1099/ijs.0.65303-0 , PubMed 18450699 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#68369

Automatically annotated from API 20NE .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#69816

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID398081.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Edaphobacter aggregans in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Edaphobacter aggregans DSM 19364 DSM 19364

Edaphobacter aggregans DSM 19364 DSM 19364

Change proposal

Change proposal