Name: Pseudoalteromonas gelatinilytica NH153
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 132999

Type strain:

Species: Pseudoalteromonas gelatinilytica

Strain Designation: NH153

Culture col. no.: DSM 100951, CGMCC 1.15370

Strain history: <- Y.-H. Wu, Second Inst. Oceanography, State Oceanic Admin., Hangzhou, China; NH153

NCBI tax ID(s): 1703256 (species)

SI-ID 402341

DSM 100951

Special Collections

Other strains from Pseudoalteromonas gelatinilytica

Section

Pseudoalteromonas gelatinilytica NH153 is an aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from surface seawater.

colony-forming
Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Alteromonadales*
	Family	*Pseudoalteromonadaceae*
	Genus	*Pseudoalteromonas*
	Species	**Pseudoalteromonas gelatinilytica**
	Full Scientific Name (LPSN)	Pseudoalteromonas gelatinilytica Yan et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #43159]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %100

[Ref.: #43159]	Cell length	1.5-2.2 µm

[Ref.: #43159]	Cell width	0.4-0.5 µm

[Ref.: #43159]	Cell shape	rod-shaped

[Ref.: #69480]	Motility	yes Confidence in %90.149

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Colony shape

circular

Information on culture and growth conditions Culture and growth conditions

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Culture medium

Marine agar (MA)

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Culture medium growth

[Ref.: #24787]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

	Kind of temperature		Temperature
[Ref.: #24787]		growth	28 °C
[Ref.: #43159]	no	growth	4 °C
[Ref.: #43159]		maximum	45 °C
[Ref.: #43159]		optimum	28-37 °C
[Ref.: #43159]		growth	15-45 °C

	pH	Kind of pH		pH
[Ref.: #43159]			optimum	7.5-8.5
[Ref.: #43159]			growth	5.5-9.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43159]

Oxygen tolerance

aerobe

[Ref.: #69481]

Ability of spore formation

no Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43159]		NaCl		growth	0-10	%(w/v)
[Ref.: #43159]		NaCl		optimum	3-5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43159]	alpha-lactose ChEBI	-	carbon source
[Ref.: #43159]	alpha-lactose ChEBI	-	builds acid from
[Ref.: #43159]	cellobiose ChEBI	+	assimilation
[Ref.: #43159]	cellobiose ChEBI	-	builds acid from
[Ref.: #43159]	D-fructose ChEBI	+	assimilation
[Ref.: #43159]	D-fructose ChEBI	-	builds acid from
[Ref.: #43159]	D-galactose ChEBI	-	builds acid from
[Ref.: #43159]	D-ribose ChEBI	-	carbon source
[Ref.: #43159]	D-ribose ChEBI	-	builds acid from
[Ref.: #43159]	dna ChEBI	-	hydrolysis
[Ref.: #43159]	ethanol ChEBI	+	assimilation
[Ref.: #43159]	ethanol ChEBI	-	builds acid from
[Ref.: #43159]	galactose ChEBI	-	carbon source
[Ref.: #43159]	gelatin ChEBI	+	hydrolysis
[Ref.: #43159]	glucose ChEBI	+	fermentation
[Ref.: #43159]	glucose ChEBI	+	builds acid from
[Ref.: #43159]	glycerol ChEBI	-	carbon source
[Ref.: #43159]	L-arabinose ChEBI	+	carbon source
[Ref.: #43159]	L-rhamnose ChEBI	-	carbon source
[Ref.: #43159]	L-rhamnose ChEBI	-	builds acid from
[Ref.: #43159]	maltose ChEBI	+	carbon source
[Ref.: #43159]	maltose ChEBI	+	builds acid from
[Ref.: #43159]	mannitol ChEBI	+	builds acid from
[Ref.: #43159]	mannose ChEBI	+	carbon source
[Ref.: #43159]	mannose ChEBI	+	builds acid from
[Ref.: #43159]	melezitose ChEBI	-	builds acid from
[Ref.: #43159]	myo-inositol ChEBI	-	builds acid from
[Ref.: #43159]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #43159]	nitrate ChEBI	-	reduction
[Ref.: #43159]	raffinose ChEBI	-	builds acid from
[Ref.: #43159]	raffinose ChEBI	-	assimilation
[Ref.: #43159]	ribitol ChEBI	-	builds acid from
[Ref.: #43159]	sea salts	+	required for growth
[Ref.: #43159]	sodium acetate ChEBI	+	assimilation
[Ref.: #43159]	sodium citrate ChEBI	+	assimilation
[Ref.: #43159]	sodium malonate ChEBI	-	carbon source
[Ref.: #43159]	sorbitol ChEBI	-	builds acid from
[Ref.: #43159]	sorbose ChEBI	-	carbon source
[Ref.: #43159]	sorbose ChEBI	-	builds acid from
[Ref.: #43159]	starch ChEBI	-	hydrolysis
[Ref.: #43159]	sucrose ChEBI	+	assimilation
[Ref.: #43159]	sucrose ChEBI	-	builds acid from
[Ref.: #43159]	trehalose ChEBI	+	assimilation
[Ref.: #43159]	trehalose ChEBI	+	builds acid from
[Ref.: #43159]	tween 40 ChEBI	-	hydrolysis
[Ref.: #43159]	tween 60 ChEBI	-	hydrolysis
[Ref.: #43159]	tween 80 ChEBI	+	hydrolysis
[Ref.: #43159]	xylose ChEBI	-	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration		Antibiotic resistance	Concentration
[Ref.: #43159]	amoxicillin ChEBI	yes	20	µg (disc)
[Ref.: #43159]	ampicillin ChEBI	yes	10	µg (disc)
[Ref.: #43159]	bacitracin ChEBI				yes	0.04	Unit
[Ref.: #43159]	chloramphenicol ChEBI	yes	30	µg (disc)
[Ref.: #43159]	clindamycin ChEBI				yes	2	µg (disc)
[Ref.: #43159]	erythromycin ChEBI	yes	10	µg (disc)
[Ref.: #43159]	gentamicin ChEBI	yes	10	µg (disc)
[Ref.: #43159]	kanamycin ChEBI	yes	30	µg (disc)
[Ref.: #43159]	nalidixic acid ChEBI	yes	30	µg (disc)
[Ref.: #43159]	neomycin ChEBI	yes	30	µg (disc)
[Ref.: #43159]	nitrofurantoin ChEBI				yes	300	µg (disc)
[Ref.: #43159]	novobiocin ChEBI				yes	30	µg (disc)
[Ref.: #43159]	nystatin ChEBI				yes	100	µg (disc)
[Ref.: #43159]	penicillin ChEBI	yes	10	Unit
[Ref.: #43159]	polymyxin b ChEBI	yes	300	Unit
[Ref.: #43159]	rifampicin ChEBI	yes	5	µg (disc)
[Ref.: #43159]	streptomycin ChEBI				yes	10	µg (disc)
[Ref.: #43159]	tetracycline ChEBI	yes	30	µg (disc)
[Ref.: #43159]	tobramycin ChEBI	yes	10	µg (disc)
[Ref.: #43159]	vancomycin ChEBI	yes	30	µg (disc)
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #43159]		hydrogen sulfide ChEBI	no
[Ref.: #43159]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #43159]	arginine dihydrolase	-	3.5.3.6
[Ref.: #43159]	catalase	+	1.11.1.6
[Ref.: #43159]	lysine decarboxylase	-	4.1.1.18
[Ref.: #43159]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #43159]	tryptophan deaminase	-	4.1.99.1

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #43159]

Fatty acid	Percentage	ECL
C16:1ω7c / C15:0 iso 2OH	27.4
C16:0	23.3
C18:1ω7c	22.6
C12:0 3OH	7.6
C18:0	3.7
C12:0	1.9
Unknown 11.799	1.8	11799
C18:1ω9c	1.2
C17:1ω8c	1.2
C14:0	1
C10:0 3OH	1
C20:1ω7c	0.7
C15:1ω8c	0.7
C12:0 iso 3OH	0.6
C17:0	0.6
C16:1ω9c	0.5
C16:0 3OH	0.5
C14:0 3OH / C16:1 iso I	0.4
C12:1 3OH	0.4
10 methyl C19:0	0.4
12-13 AT C13:1	0.3
C16:0 iso	0.3

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24787]	Sample type/isolated from	surface seawater
[Ref.: #24787]	Geographic location (country and/or sea, region)	South China Sea
[Ref.: #24787]	Country	China
[Ref.: #24787]	Country ISO 3 Code	CHN
[Ref.: #24787]	Continent	Asia

[Ref.: #43159]	Sample type/isolated from	seawater
[Ref.: #43159]	Geographic location (country and/or sea, region)	South China Sea
[Ref.: #43159]	Country	China
[Ref.: #43159]	Country ISO 3 Code	CHN
[Ref.: #43159]	Continent	Asia
[Ref.: #43159]	Geographic location	19.0000°/119.0000°
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Surface water

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KT377064 (>99% sequence identity) for Pseudoalteromonas from Microbeatlas

Aquatic Samples	660
Soil Samples	4
Animal Samples	23
Plant Samples	4
Total Samples	691

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

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Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #24787]	Pseudoalteromonas gelatinilytica strain NH153 16S ribosomal RNA gene, complete sequence	KT377064	1539	GenBank ENA	1703256 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Pseudoalteromonas gelatinilytica NH153	GCA_001641615	scaffold	GenBank ENA	1703256 tax ID	*
[Ref.: #66792]	Pseudoalteromonas gelatinilytica NH153	2744054619	draft	JGI IMG/M	1703256 tax ID	*

[Ref.: #43159]	GC-content	41.4 mol%	genome sequence analysis
[Ref.: #24787]	GC-content	41.4 mol%	sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Pseudoalteromonas gelatinilytica NH153 NCBI: GCA_001641615.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Pseudoalteromonas gelatinilytica NH153 NCBI: GCA_001641615.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	100	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	96.342	yes
[Ref.: #69480]	aerobic	aerobicⓘ	yes	75.677	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	84.226	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	99.944	no
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	90.149	no

Availability in culture collections External links

[Ref.: #24787]

Culture collection no.

DSM 100951, CGMCC 1.15370

[Ref.: #91275]

SI-ID 402341

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pseudoalteromonas gelatinilytica sp. nov., isolated from surface seawater.	Yan J, Wu YH, Meng FX, Wang CS, Xiong SL, Zhang XY, Zhang YZ, Xu XW, Zhang DM	Int J Syst Evol Microbiol	10.1099/ijsem.0.001224	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24787

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 100951

#43159

Jing Yan, Yue-Hong Wu, Fan-Xu Meng, Chun-Sheng Wang, Shang-Ling Xiong, Xi-Ying Zhang, Yu-Zhong Zhang, Xue-Wei Xu and De-Min Zhang: Pseudoalteromonas gelatinilytica sp. nov., isolated from surface seawater. IJSEM 66: 3538 - 3545 2016 ( DOI 10.1099/ijsem.0.001224 , PubMed 27278860 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#91275

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID402341.1 )

* These data were automatically processed and therefore are not curated

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