Name: Magnetospirillum sulfuroxidans J10
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 132858

Type strain:

Species: Magnetospirillum sulfuroxidans

Strain Designation: J10

Culture col. no.: DSM 23205

Strain history: <- J. S. Geelhoed, Lab. Microbiology, Wageningen Univ., Netherlands; J10 (Magnetospirillum sulfuroxidans) <- J. S. Geelhoed {2003}

NCBI tax ID(s): 31872 (species), 611300 (species)

Special Collections

DSMZ

Section

Magnetospirillum sulfuroxidans J10 is a Gram-negative bacterium that was isolated from freshwater sediment.

Gram-negative
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodospirillales*
	Family	*Rhodospirillaceae*
	Genus	*Magnetospirillum*
	Species	**Magnetospirillum sulfuroxidans**
	Full Scientific Name (LPSN)	Magnetospirillum sulfuroxidans Koziaeva et al. 2023

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %98.5

Information on culture and growth conditions Culture and growth conditions

[Ref.: #24646]

Culture medium

MAGNETOSPIRILLUM MEDIUM (DSMZ Medium 380)

[Ref.: #24646]

Culture medium growth

[Ref.: #24646]

Culture medium link

Medium recipe at MediaDive

[Ref.: #24646]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #24646]			growth	30 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]

Ability of spore formation

no Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24646]	Sample type/isolated from	freshwater sediment
[Ref.: #24646]	Geographic location (country and/or sea, region)	Delft
[Ref.: #24646]	Country	Netherlands
[Ref.: #24646]	Country ISO 3 Code	NLD
[Ref.: #24646]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Sediment
#Environmental	#Aquatic	#Freshwater

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FJ860937 (>99% sequence identity) for Magnetospirillum gryphiswaldense subclade from Microbeatlas

Aquatic Samples	5
Soil Samples
Animal Samples
Plant Samples
Total Samples	5

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #24646]	Alpha proteobacterium J10 16S ribosomal RNA gene, partial sequence	FJ860937	1225	GenBank ENA	671855 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Magnetospirillum sulfuroxidans J10	GCA_018224925	scaffold	GenBank ENA	611300 tax ID	*
[Ref.: #66792]	Magnetospirillum sp. J10	611300.3	wgs	PATRIC	611300 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Magnetospirillum sp. J10 PATRIC: 611300.3
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Magnetospirillum sp. J10 J10 NCBI: GCA_018224925.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	98.5	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	72.242	no
[Ref.: #69480]	aerobic	aerobicⓘ	no	56.311	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	89.418	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	94.61	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	81.568	no

Availability in culture collections External links

[Ref.: #24646]

Culture collection no.

DSM 23205

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24646

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23205

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Magnetospirillum sp. J10

Magnetospirillum sp. J10 J10

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