Strain identifier
BacDive ID: 132858
Type strain: 
Species: Magnetospirillum sulfuroxidans
Strain Designation: J10
Strain history: <- J. S. Geelhoed, Lab. Microbiology, Wageningen Univ., Netherlands; J10 (Magnetospirillum sulfuroxidans) <- J. S. Geelhoed {2003}
NCBI tax ID(s): 31872 (species), 611300 (species)
version 9.1 (current version)
General
@ref: 24646
BacDive-ID: 132858
DSM-Number: 23205
keywords: genome sequence, 16S sequence, Bacteria, Gram-negative
description: Magnetospirillum sulfuroxidans J10 is a Gram-negative bacterium that was isolated from freshwater sediment.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 31872 | species |
| 611300 | species |
strain history
- @ref: 24646
- history: <- J. S. Geelhoed, Lab. Microbiology, Wageningen Univ., Netherlands; J10 (Magnetospirillum sulfuroxidans) <- J. S. Geelhoed {2003}
doi: 10.13145/bacdive132858.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Rhodospirillales
- family: Rhodospirillaceae
- genus: Magnetospirillum
- species: Magnetospirillum sulfuroxidans
- full scientific name: Magnetospirillum sulfuroxidans Koziaeva et al. 2023
@ref: 24646
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhodospirillales
family: Rhodospirillaceae
genus: Magnetospirillum
species: Magnetospirillum sp.
full scientific name: Magnetospirillum sp.
strain designation: J10
type strain: no
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 98.5
Culture and growth conditions
culture medium
- @ref: 24646
- name: MAGNETOSPIRILLUM MEDIUM (DSMZ Medium 380)
- growth: yes
- link: https://mediadive.dsmz.de/medium/380
- composition: Name: MAGNETOSPIRILLUM MEDIUM (DSMZ Medium 380) Composition: Agar 1.3 g/l (optional) KH2PO4 0.68 g/l L(+)-Tartaric acid 0.37 g/l Succinic acid 0.37 g/l NaNO3 0.12 g/l Yeast extract 0.1 g/l Na-thioglycolate 0.05 g/l Na-acetate 0.05 g/l MgSO4 x 7 H2O 0.015 g/l FeCl3 x 6 H2O 0.009 g/l Nitrilotriacetic acid 0.0075 g/l NaCl 0.005 g/l Quinic acid 0.0038 g/l MnSO4 x H2O 0.0025 g/l CoSO4 x 7 H2O 0.0009 g/l ZnSO4 x 7 H2O 0.0009 g/l FeSO4 x 7 H2O 0.0005 g/l Sodium resazurin 0.0005 g/l CaCl2 x 2 H2O 0.0005 g/l Pyridoxine hydrochloride 0.0003 g/l Thiamine-HCl x 2 H2O 0.0002 g/l Nicotinic acid 0.0002 g/l NiCl2 x 6 H2O 0.00015 g/l AlK(SO4)2 x 12 H2O 0.0001 g/l Calcium pantothenate 0.0001 g/l Vitamin B12 0.0001 g/l p-Aminobenzoic acid 8e-05 g/l CuSO4 x 5 H2O 5e-05 g/l Na2MoO4 x 2 H2O 5e-05 g/l H3BO3 5e-05 g/l D-(+)-biotin 2e-05 g/l Na2WO4 x 2 H2O 2e-06 g/l Na2SeO3 x 5 H2O 1.5e-06 g/l Distilled water
culture temp
- @ref: 24646
- growth: positive
- type: growth
- temperature: 30
Physiology and metabolism
spore formation
- @ref: 69481
- spore formation: no
- confidence: 100
Isolation, sampling and environmental information
isolation
- @ref: 24646
- sample type: freshwater sediment
- geographic location: Delft
- country: Netherlands
- origin.country: NLD
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Sediment |
| #Environmental | #Aquatic | #Freshwater |
taxonmaps
- @ref: 69479
- File name: preview.99_39383.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_215;96_1703;97_2039;98_2506;99_39383&stattab=map
- Last taxonomy: Magnetospirillum gryphiswaldense subclade
- 16S sequence: FJ860937
- Sequence Identity:
- Total samples: 5
- aquatic counts: 5
Sequence information
16S sequences
- @ref: 24646
- description: Alpha proteobacterium J10 16S ribosomal RNA gene, partial sequence
- accession: FJ860937
- length: 1225
- database: nuccore
- NCBI tax ID: 671855
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Magnetospirillum sulfuroxidans J10 | GCA_018224925 | scaffold | ncbi | 611300 |
| 66792 | Magnetospirillum sp. J10 | 611300.3 | wgs | patric | 611300 |
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69481 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 100 | no |
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 98.5 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 72.242 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 56.311 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 89.418 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 94.61 | yes |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | yes | 81.568 | no |
External links
@ref: 24646
culture collection no.: DSM 23205
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 24646 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-23205 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23205) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 |