Name: Campylobacter jejuni subsp. doylei 093
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 132841

Type strain:

Species: Campylobacter jejuni subsp. doylei

Strain Designation: 093, 1141

Culture col. no.: DSM 104768, ATCC 49349, CCUG 24567, LMG 8803, NCTC 11951, IMVS 1141, LMG 8843, CIP 103751

Strain history: CIP <- 1993, NCTC <- 1986, T.W. Steele, Inst. Med. Vet. Res., Adelaide, Australia: strain 1141

NCBI tax ID(s): 1408360 (strain), 32021 (subspecies)

SI-ID 1494

LMG 8843, ATCC 49349, NCTC 11951, CCUG 24567, CIP 103751

Special Collections

Other strains from Campylobacter jejuni subsp. doylei

Section

When using BacDive for research please cite our paper

Campylobacter jejuni subsp. doylei 093 is a microaerophile, mesophilic, Gram-negative bacterium that was isolated from Faeces , 2 year old child.

Gram-negative
motile
rod-shaped
mesophilic
microaerophile
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Pseudomonadota*
	Class	*Epsilonproteobacteria*
	Order	*Campylobacterales*
	Family	*Campylobacteraceae*
	Genus	*Campylobacter*
	Species	**Campylobacter jejuni subsp. doylei**
	Full Scientific Name (LPSN)	Campylobacter jejuni subsp. doylei Steele and Owen 1988

Information on morphological and physiological properties Morphology

[Ref.: #120329]	Gram stain	negative
[Ref.: #125438]	Gram stain	negative Confidence in %97.955
[Ref.: #125439]	Gram stain	negative Confidence in %98.7

[Ref.: #120329]	Cell shape	rod-shaped

[Ref.: #120329]	Motility	yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #24629]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #24629]

Culture medium growth

[Ref.: #24629]

Culture medium link

Medium recipe at MediaDive

[Ref.: #24629]

Culture medium composition

expand / minimize

[Ref.: #40779]

Culture medium

MEDIUM 6 - Columbia agar with 10 % horse blood

[Ref.: #40779]

Culture medium growth

[Ref.: #40779]

Culture medium composition

expand / minimize

[Ref.: #120329]

Culture medium

CIP Medium 6

[Ref.: #120329]

Culture medium growth

[Ref.: #120329]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #24629]		growth	37 °C
[Ref.: #40779]		growth	37 °C
[Ref.: #47975]		growth	37 °C
[Ref.: #47975]	negative	growth	42 °C
[Ref.: #120329]	negative	growth	30 °C
[Ref.: #120329]	negative	growth	25 °C
[Ref.: #120329]	negative	growth	10 °C
[Ref.: #120329]	negative	growth	5 °C
[Ref.: #120329]		growth	37-41 °C
[Ref.: #120329]	negative	growth	45 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #47975]

Oxygen tolerance

microaerophile

[Ref.: #125438]	Ability of spore formation	no Confidence in %94.64
[Ref.: #125439]	Ability of spore formation	no Confidence in %96.9

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #120329]		NaCl		growth	3.5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #120329]	hippurate ChEBI	-	hydrolysis
[Ref.: #68373]	hippurate ChEBI	+	hydrolysis	* from API CAM
[Ref.: #68373]	malate ChEBI	-	assimilation	* from API CAM
[Ref.: #120329]	nitrate ChEBI	-	reduction
[Ref.: #120329]	nitrite ChEBI	-	reduction
[Ref.: #68373]	triphenyltetrazolium chloride ChEBI	+	reduction	* from API CAM
[Ref.: #68373]	urea ChEBI	-	hydrolysis	* from API CAM

	Metabolite	Antibiotic sensitivity	Concentration		Antibiotic resistance
[Ref.: #120329]	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	no			yes
[Ref.: #68373]	cefazolin ChEBI	yes	224	µg		* from API CAM
[Ref.: #68373]	nalidixic acid ChEBI	yes	84	µg		* from API CAM

	Metabolite production	Metabolite	Production
[Ref.: #120329]		indole ChEBI	no
[Ref.: #68373]		hydrogen sulfide ChEBI	no	* from API CAM

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68373]	alkaline phosphatase	+	3.1.3.1	* from API CAM
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #120329]	catalase	+	1.11.1.6
[Ref.: #68373]	catalase	+	1.11.1.6	* from API CAM
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #120329]	DNase	+
[Ref.: #68373]	esterase	+		* from API CAM
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #120329]	gamma-glutamyltransferase	+	2.3.2.2
[Ref.: #68373]	gamma-glutamyltransferase	+	2.3.2.2	* from API CAM
[Ref.: #120329]	gelatinase	-
[Ref.: #68373]	L-arginine arylamidase	-		* from API CAM
[Ref.: #68373]	L-aspartate arylamidase	-	3.4.11.21	* from API CAM
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #120329]	oxidase	+
[Ref.: #68373]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API CAM
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #120329]	urease	-	3.5.1.5
[Ref.: #68373]	urease	-	3.5.1.5	* from API CAM
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® CAM:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Urease/urea hydrolysisURE	Reduction of nitrateNIT	EsteraseEST	Hippuric acidHIP	gamma-Glutamyl transferaseGGT	Reduction of Triphenyl tetrazolium chlorideTTC	Pyrrolidonyl arylamidasePYRA	L-arginine arylamidaseArgA	L-aspartic acid arylamidaseAspA	Alkaline phosphatasePAL	H2S productionH2S	Assimilation of D-glucoseGLU	Assimilation of succinateSUT	Growth inhibitionNAL	Growth inhibitionCFZ	Assimilation of acetateACE	Assimilation of propionic acidPROP	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Erythromycin resistance (+) sensitivity (-)ERO	CatalaseCAT
[Ref.: #24629]	4306	-	-	+	+	+	+	-	-	-	+	-	-	-	-	-	-	-	-	-	-	+
[Ref.: #24629]	4258	-	-	+	+	+	+	-	-	-	+	-	-	-	-	-	-	-	-	-	-	+
[Ref.: #24629]	4197	-	+	+	+	+	+	-	-	-	+	-	+	+	-	-	+/-	+/-	-	+	+	+

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #120329]	7660	-	-	+	+	-	+	-	-	-	-	+	+	-	-	-	+	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24629]	Sample type/isolated from	Faeces (fluid), 2 year old child
[Ref.: #24629]	Country	Australia
[Ref.: #24629]	Country ISO 3 Code	AUS
[Ref.: #24629]	Continent	Australia and Oceania

[Ref.: #47975]	Sample type/isolated from	Human feces,2-yr-old child
[Ref.: #47975]	Country	Australia
[Ref.: #47975]	Country ISO 3 Code	AUS
[Ref.: #47975]	Continent	Australia and Oceania

[Ref.: #120329]	Sample type/isolated from	Human, Child, feces
[Ref.: #120329]	Geographic location (country and/or sea, region)	Adelaide
[Ref.: #120329]	Country	Australia
[Ref.: #120329]	Country ISO 3 Code	AUS
[Ref.: #120329]	Continent	Australia and Oceania
[Ref.: #120329]	Isolation date	1986
* marker position based on {}

Isolation sources categories

#Infection	#Patient	-
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)
#Host	#Human	#Child

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence DQ174144 (>99% sequence identity) for Campylobacter jejuni from Microbeatlas

Aquatic Samples	2583
Soil Samples	1150
Animal Samples	42043
Plant Samples	337
Total Samples	46113

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #24629]	Biosafety level	2	Risk group (German classification) According to TRBA 466
[Ref.: #120329]	Biosafety level	2	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #24629]	Campylobacter jejuni subsp. doylei strain LMG 8843 16S ribosomal RNA (rrs) gene, partial sequence	DQ174144	1341	GenBank ENA	32021 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Campylobacter jejuni subsp. doylei NCTC11951	GCA_900637255	complete	GenBank ENA	32021 tax ID	*
[Ref.: #66792]	Campylobacter jejuni subsp. doylei ATCC 49349	GCA_000701745	scaffold	GenBank ENA	1408360 tax ID	*
[Ref.: #66792]	Campylobacter jejuni subsp. doylei ATCC 49349	1408360.3	wgs	PATRIC	1408360 tax ID	*
[Ref.: #66792]	Campylobacter jejuni subsp. doylei strain NCTC11951	32021.10	complete	PATRIC	32021 tax ID	*
[Ref.: #66792]	Campylobacter jejuni doylei ATCC 49349	2561511059	draft	JGI IMG/M	1408360 tax ID	*

[Ref.: #24629]

GC-content

28 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Campylobacter jejuni subsp. doylei NCTC11951 NCBI: GCA_900637255.1
[Ref.: #125438]	gram-positive	gram-positiveⓘ	no	97.955	no
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	81.954	yes
[Ref.: #125438]	aerobic	aerobicⓘ	no	80.399	no
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	94.64	no
[Ref.: #125438]	thermophile	thermophilicⓘ	no	90.13	no
[Ref.: #125438]	motile2+	flagellatedⓘ	yes	63.47	no

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Campylobacter jejuni subsp. doylei NCTC11951 NCBI: GCA_900637255
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	no	96.9
[Ref.: #125439]	BacteriaNet	motilityⓘ	no	65.4
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	negative	98.7
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	microaerophile	82.1

Availability in culture collections External links

[Ref.: #24629]

Culture collection no.

DSM 104768, ATCC 49349, CCUG 24567, LMG 8803, NCTC 11951, IMVS 1141, LMG 8843, CIP 103751

[Ref.: #91129]

SI-ID 1494

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24629

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 104768

#40779 ; Curators of the CIP;
#47975 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 24567

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68373

Automatically annotated from API CAM .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#91129

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID1494.1 )

#120329 Collection of Institut Pasteur ; Curators of the CIP; CIP 103751

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

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Campylobacter jejuni subsp. doylei NCTC11951

Campylobacter jejuni subsp. doylei NCTC11951

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