Strain identifier

BacDive ID: 132841

Type strain: Yes

Species: Campylobacter jejuni subsp. doylei

Strain Designation: 093, 1141

Strain history: CIP <- 1993, NCTC <- 1986, T.W. Steele, Inst. Med. Vet. Res., Adelaide, Australia: strain 1141

NCBI tax ID(s): 1408360 (strain), 32021 (subspecies)

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General

@ref: 24629

BacDive-ID: 132841

DSM-Number: 104768

keywords: genome sequence, 16S sequence, Bacteria, microaerophile, Gram-negative, motile, rod-shaped

description: Campylobacter jejuni subsp. doylei 093 is a microaerophile, Gram-negative, motile bacterium that was isolated from Faeces , 2 year old child.

NCBI tax id

NCBI tax idMatching level
32021subspecies
1408360strain

strain history

@refhistory
24629<- NCTC; NCTC 11951 <- T. W. Steele; IMVS 1141
120329CIP <- 1993, NCTC <- 1986, T.W. Steele, Inst. Med. Vet. Res., Adelaide, Australia: strain 1141

doi: 10.13145/bacdive132841.20240916.9.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Epsilonproteobacteria
  • order: Campylobacterales
  • family: Campylobacteraceae
  • genus: Campylobacter
  • species: Campylobacter jejuni subsp. doylei
  • full scientific name: Campylobacter jejuni subsp. doylei Steele and Owen 1988

@ref: 24629

domain: Bacteria

phylum: Proteobacteria

class: Epsilonproteobacteria

order: Campylobacterales

family: Campylobacteraceae

genus: Campylobacter

species: Campylobacter jejuni subsp. doylei

full scientific name: Campylobacter jejuni subsp. doylei Steele and Owen 1988

strain designation: 093, 1141

type strain: yes

Morphology

cell morphology

@refgram stainconfidencecell shapemotility
69480negative97.955
120329negativerod-shapedyes

colony morphology

  • @ref: 120329

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
24629COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
40779MEDIUM 6 - Columbia agar with 10 % horse bloodyesDistilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml)
120329CIP Medium 6yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=6

culture temp

@refgrowthtypetemperature
24629positivegrowth37
40779positivegrowth37
47975positivegrowth37
47975nogrowth42
120329positivegrowth37-41
120329nogrowth5
120329nogrowth10
120329nogrowth25
120329nogrowth30
120329nogrowth45

Physiology and metabolism

oxygen tolerance

  • @ref: 47975
  • oxygen tolerance: microaerophile

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 94.64

halophily

  • @ref: 120329
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 3.5 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
120329606565hippurate-hydrolysis
12032917632nitrate-reduction
12032916301nitrite-reduction
6837316199urea-hydrolysis
68373606565hippurate+hydrolysis
6837378019triphenyltetrazolium chloride+reduction
6837325115malate-assimilation

antibiotic resistance

@refChEBImetaboliteis antibioticis sensitivesensitivity conc.is resistant
68373474053cefazolinyesyes224 µg
68373100147nalidixic acidyesyes84 µg
1203290129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)yesnoyes

metabolite production

@refChebi-IDmetaboliteproduction
6837316136hydrogen sulfideno
12032935581indoleno

enzymes

@refvalueactivityec
68373catalase+1.11.1.6
68373alkaline phosphatase+3.1.3.1
68373L-aspartate arylamidase-3.4.11.21
68373L-arginine arylamidase-
68373pyrrolidonyl arylamidase-3.4.19.3
68373gamma-glutamyltransferase+2.3.2.2
68373esterase+
68373urease-3.5.1.5
120329oxidase+
120329gelatinase-
120329DNase+
120329catalase+1.11.1.6
120329gamma-glutamyltransferase+2.3.2.2
120329urease-3.5.1.5
68382alkaline phosphatase-3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
120329--++-+----++---+----

API CAM

@refURENITESTHIPGGTTTCPYRAArgAAspAPALH2SGLUSUTNALCFZACEPROPMLTCITEROCAT
24629--++++---+----------+
24629-+++++---+-++--+/-+/--+++
24629--++++---+----------+

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentgeographic locationisolation date
24629Faeces (fluid), 2 year old childAustraliaAUSAustralia and Oceania
47975Human feces,2-yr-old childAustraliaAUSAustralia and Oceania
120329Human, Child, fecesAustraliaAUSAustralia and OceaniaAdelaide1986

isolation source categories

Cat1Cat2Cat3
#Infection#Patient
#Host Body Product#Gastrointestinal tract#Feces (Stool)
#Host#Human#Child

taxonmaps

  • @ref: 69479
  • File name: preview.99_13.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15775;96_10;97_10;98_12;99_13&stattab=map
  • Last taxonomy: Campylobacter jejuni
  • 16S sequence: DQ174144
  • Sequence Identity:
  • Total samples: 46113
  • soil counts: 1150
  • aquatic counts: 2583
  • animal counts: 42043
  • plant counts: 337

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
246292Risk group (German classification)
1203292Risk group (French classification)

Sequence information

16S sequences

  • @ref: 24629
  • description: Campylobacter jejuni subsp. doylei strain LMG 8843 16S ribosomal RNA (rrs) gene, partial sequence
  • accession: DQ174144
  • length: 1341
  • database: nuccore
  • NCBI tax ID: 32021

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Campylobacter jejuni subsp. doylei NCTC11951GCA_900637255completencbi32021
66792Campylobacter jejuni subsp. doylei ATCC 49349GCA_000701745scaffoldncbi1408360
66792Campylobacter jejuni subsp. doylei ATCC 493491408360.3wgspatric1408360
66792Campylobacter jejuni subsp. doylei strain NCTC1195132021.10completepatric32021
66792Campylobacter jejuni doylei ATCC 493492561511059draftimg1408360

GC content

  • @ref: 24629
  • GC-content: 28
  • method: thermal denaturation, midpoint method (Tm)

Genome-based predictions

predictions

@reftraitmodeldescriptionpredictionconfidencetraining_data
69480gram-positivegram-positivePositive reaction to Gram-stainingno97.955no
69480anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no81.954yes
69480aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)no80.399no
69480spore-formingspore-formingAbility to form endo- or exosporesno94.64no
69480thermophilicthermophileAbility to grow at temperatures above or equal to 45°Cno90.13no
69480flagellatedmotile2+Ability to perform flagellated movementyes63.47no

External links

@ref: 24629

culture collection no.: DSM 104768, ATCC 49349, CCUG 24567, LMG 8803, NCTC 11951, IMVS 1141, LMG 8843, CIP 103751

straininfo link

  • @ref: 91129
  • straininfo: 1494

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
24629Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-104768Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 104768)
40779Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/15583
47975Curators of the CCUGhttps://www.ccug.se/strain?id=24567Culture Collection University of Gothenburg (CCUG) (CCUG 24567)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68373Automatically annotated from API CAM
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
91129Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID1494.1
120329Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103751Collection of Institut Pasteur (CIP 103751)