Name: Amycolatopsis viridis GY115
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 13278

Type strain:

Species: Amycolatopsis viridis

Strain Designation: GY115

Variant: Isotype of BacDive ID 13277

Culture col. no.: DSM 45806, NCIMB 14700, NRRL B-24837

Strain history: <- J. Swezey, NRRL; NRRL B-24837 <- A. Tan

NCBI tax ID(s): 185678 (species)

SI-ID 398520

DSM 45806, DSM 45668

Special Collections

Other strains from Amycolatopsis viridis

Section

Amycolatopsis viridis GY115 is a bacterium that builds an aerial mycelium and was isolated from arid composite Australian soil.

Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Pseudonocardiales*
	Family	*Pseudonocardiaceae*
	Genus	*Amycolatopsis*
	Species	**Amycolatopsis viridis**
	Full Scientific Name (LPSN)	Amycolatopsis viridis Zucchi et al. 2012

Information on morphological and physiological properties Morphology

[Ref.: #69441]	Colony color	Brown grey (7013), Yellow olive (6014)
[Ref.: #69441]	Cultivation medium used	suter with tyrosine

[Ref.: #69441]	Colony color	Beige (1001), Yellow olive (6014), Black olive (6015)
[Ref.: #69441]	Cultivation medium used	ISP 5

[Ref.: #69441]	Colony color	Beige (1001)
[Ref.: #69441]	Cultivation medium used	ISP 6

[Ref.: #69441]	Colony color	Ivory (1014)
[Ref.: #69441]	Cultivation medium used	ISP 3

[Ref.: #69441]	Colony color	Ivory (1014), Yellow olive (6014)
[Ref.: #69441]	Cultivation medium used	suter without tyrosine

[Ref.: #69441]	Colony color	Ivory (1014), Yellow olive (6014), Black olive (6015)
[Ref.: #69441]	Cultivation medium used	ISP 7

[Ref.: #69441]	Colony color	Light ivory (1015), Reed green (6013)
[Ref.: #69441]	Cultivation medium used	ISP 4

[Ref.: #69441]	Colony color	Sand yellow (1002)
[Ref.: #69441]	Cultivation medium used	ISP 2

[Ref.: #69441]	Pigment production	no
[Ref.: #69441]	Pigment name	Melanin
[Ref.: #69441]	Pigment production	no
[Ref.: #69441]	Pigment name	soluble pigment

[Ref.: #69441]	Multicellular complex forming ability	yes
[Ref.: #69441]	Multicellular complex name	Aerial mycelium
[Ref.: #69441]	Multicellular complex color	Cream (9001)
[Ref.: #69441]	Medium Name (multicellularity)	ISP 2

[Ref.: #69441]	Multicellular complex forming ability	yes
[Ref.: #69441]	Multicellular complex name	Aerial mycelium
[Ref.: #69441]	Multicellular complex color	Signal white (9003), traffic grey a (7042)
[Ref.: #69441]	Medium Name (multicellularity)	ISP 3

[Ref.: #69441]	Multicellular complex forming ability	no
[Ref.: #69441]	Multicellular complex name	Aerial mycelium
[Ref.: #69441]	Medium Name (multicellularity)	ISP 4

[Ref.: #69441]	Multicellular complex forming ability	yes
[Ref.: #69441]	Multicellular complex name	Aerial mycelium
[Ref.: #69441]	Multicellular complex color	Light grey (7035), stone grey (7030)
[Ref.: #69441]	Medium Name (multicellularity)	ISP 5

[Ref.: #69441]	Multicellular complex forming ability	yes
[Ref.: #69441]	Multicellular complex name	Aerial mycelium
[Ref.: #69441]	Multicellular complex color	Grey white (9002)
[Ref.: #69441]	Medium Name (multicellularity)	ISP 6

[Ref.: #69441]	Multicellular complex forming ability	yes
[Ref.: #69441]	Multicellular complex name	Aerial mycelium
[Ref.: #69441]	Multicellular complex color	Agate grey (7038), grey white (9002)
[Ref.: #69441]	Medium Name (multicellularity)	ISP 7

[Ref.: #69441]	Multicellular complex forming ability	yes
[Ref.: #69441]	Multicellular complex name	Aerial mycelium
[Ref.: #69441]	Multicellular complex color	Agate grey (7038)
[Ref.: #69441]	Medium Name (multicellularity)	suter with tyrosine

[Ref.: #69441]	Multicellular complex forming ability	yes
[Ref.: #69441]	Multicellular complex name	Aerial mycelium
[Ref.: #69441]	Multicellular complex color	Silk grey (7044)
[Ref.: #69441]	Medium Name (multicellularity)	suter without tyrosine

Multimedia content

[Ref.: #69441]

Caption:

Plates (548, ISP2, ISP3, ISP4, ISP5, ISP7)

[Ref.: #69441]

Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

[Ref.: #69441]

Caption:

Plates (548, ISP2, ISP3, ISP4, ISP5, ISP7)

[Ref.: #69441]

Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

Information on culture and growth conditions Culture and growth conditions

[Ref.: #18262]

Culture medium

BENNETT'S AGAR (DSMZ Medium 548)

[Ref.: #18262]

Culture medium growth

[Ref.: #18262]

Culture medium link

Medium recipe at MediaDive

[Ref.: #18262]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #18262]			growth	28 °C

Information on physiology and metabolism Physiology and metabolism

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #69441]		NaCl		growth	0	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #69441]	arabinose ChEBI	-	growth
[Ref.: #69441]	cellulose ChEBI	-	growth
[Ref.: #68379]	D-glucose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-mannitol ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-ribose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-xylose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	esculin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #69441]	fructose ChEBI	+	growth
[Ref.: #68379]	gelatin ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #69441]	glucose ChEBI	+	growth
[Ref.: #68379]	glycogen ChEBI	-	fermentation	* from API Coryne
[Ref.: #69441]	inositol ChEBI	-	growth
[Ref.: #68379]	lactose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	maltose ChEBI	-	fermentation	* from API Coryne
[Ref.: #69441]	mannose ChEBI	-	growth
[Ref.: #68379]	nitrate ChEBI	-	reduction	* from API Coryne
[Ref.: #69441]	raffinose ChEBI	-	growth
[Ref.: #69441]	rhamnose ChEBI	+/-	growth
[Ref.: #69441]	sucrose ChEBI	-	growth
[Ref.: #68379]	sucrose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	urea ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #69441]	xylose ChEBI	+	growth
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68379]	alkaline phosphatase	+	3.1.3.1	* from API Coryne
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68379]	alpha-glucosidase	-	3.2.1.20	* from API Coryne, API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68379]	beta-galactosidase	-	3.2.1.23	* from API Coryne
[Ref.: #68379]	beta-glucosidase	-	3.2.1.21	* from API Coryne, API zym
[Ref.: #68379]	beta-glucuronidase	+	3.2.1.31	* from API Coryne
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68379]	gelatinase	+		* from API Coryne
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68379]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API Coryne
[Ref.: #68379]	pyrazinamidase	-	3.5.1.B15	* from API Coryne
[Ref.: #68379]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API Coryne
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68379]	urease	-	3.5.1.5	* from API Coryne
	Only first 10 entries are displayed. Click here to see all.

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #69441]	3934	-	-	-	+	+	-	-	-	-	-	+	not determinedn.d.	-	-	-	-	-	-	-	-	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #69441]	6118	not determinedn.d.	+/-	+/-	+	+/-	+	+/-	+/-	-	-	+	+/-	-	+/-	+/-	-	-	+	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #18262]	Sample type/isolated from	arid composite Australian soil
[Ref.: #18262]	Country	Australia
[Ref.: #18262]	Country ISO 3 Code	AUS
[Ref.: #18262]	Continent	Australia and Oceania
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Climate	#Hot	#Arid

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18262]

Biosafety level

Risk group (German classification)
According to TRBA 466

Availability in culture collections External links

[Ref.: #18262]

Culture collection no.

DSM 45806, NCIMB 14700, NRRL B-24837

[Ref.: #82481]

SI-ID 398520

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Amycolatopsis thermophila sp. nov. and Amycolatopsis viridis sp. nov., thermophilic actinomycetes isolated from arid soil.	Zucchi TD, Tan GYA, Goodfellow M	Int J Syst Evol Microbiol	10.1099/ijs.0.029256-0	2011	*

References

#18262

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45806

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#68379

Automatically annotated from API Coryne .

#68382

Automatically annotated from API zym .

#69441

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#82481

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID398520.1 )

* These data were automatically processed and therefore are not curated

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