Name: Amycolatopsis samaneae DSM 45649
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 13273

Type strain:

Species: Amycolatopsis samaneae

Culture col. no.: DSM 45649, BCC 35842, NBRC 106095, TISTR 1919, RM 287, JCM 17934

Strain history: BCC 35842 <-- K. Duangmal RM287.

NCBI tax ID(s): 664691 (species)

SI-ID 403813

DSM 45649

Section

Amycolatopsis samaneae DSM 45649 is an aerobe, spore-forming, mesophilic bacterium that builds an aerial mycelium and was isolated from roots of Samanea saman.

Gram-positive
spore-forming
aerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Pseudonocardiales*
	Family	*Pseudonocardiaceae*
	Genus	*Amycolatopsis*
	Species	**Amycolatopsis samaneae**
	Full Scientific Name (LPSN)	Amycolatopsis samaneae Duangmal et al. 2011

Information on morphological and physiological properties Morphology

[Ref.: #29853]	Gram stain	positive

[Ref.: #29853]	Motility	no

[Ref.: #21390]	Colony color	Maize yellow (1006)
[Ref.: #21390]	Incubation period	10-14 days
[Ref.: #21390]	Cultivation medium used	ISP 2

[Ref.: #21390]	Colony color	Sand yellow (1002)
[Ref.: #21390]	Incubation period	10-14 days
[Ref.: #21390]	Cultivation medium used	ISP 3

[Ref.: #21390]	Colony color	Traffic yellow (1023)
[Ref.: #21390]	Incubation period	10-14 days
[Ref.: #21390]	Cultivation medium used	ISP 4

[Ref.: #21390]	Colony color	Traffic yellow (1023)
[Ref.: #21390]	Incubation period	10-14 days
[Ref.: #21390]	Cultivation medium used	ISP 5

[Ref.: #21390]	Colony color	Sun yellow (1037)
[Ref.: #21390]	Incubation period	10-14 days
[Ref.: #21390]	Cultivation medium used	ISP 7

[Ref.: #21390]	Colony color	Ochre yellow (1024)
[Ref.: #21390]	Incubation period	10-14 days
[Ref.: #21390]	Cultivation medium used	Suter with tyrosine

[Ref.: #21390]	Colony color	Golden yellow (1004)
[Ref.: #21390]	Incubation period	10-14 days
[Ref.: #21390]	Cultivation medium used	Suter without tyrosine

[Ref.: #29853]

Pigment production

yes

[Ref.: #21390]	Multicellular complex forming ability	yes
[Ref.: #21390]	Multicellular complex name	Aerial Mycelium
[Ref.: #21390]	Multicellular complex color	Oyster white (1013)
[Ref.: #21390]	Medium Name (multicellularity)	ISP 2

[Ref.: #21390]	Multicellular complex forming ability	yes
[Ref.: #21390]	Multicellular complex name	Aerial Mycelium
[Ref.: #21390]	Multicellular complex color	Cream (9001)
[Ref.: #21390]	Medium Name (multicellularity)	ISP 3

[Ref.: #21390]	Multicellular complex forming ability	yes
[Ref.: #21390]	Multicellular complex name	Aerial Mycelium
[Ref.: #21390]	Multicellular complex color	Cream (9001)
[Ref.: #21390]	Medium Name (multicellularity)	ISP 4

[Ref.: #21390]	Multicellular complex forming ability	yes
[Ref.: #21390]	Multicellular complex name	Aerial Mycelium
[Ref.: #21390]	Multicellular complex color	Light ivory (1015)
[Ref.: #21390]	Medium Name (multicellularity)	ISP 5

[Ref.: #21390]	Multicellular complex forming ability	yes
[Ref.: #21390]	Multicellular complex name	Aerial Mycelium
[Ref.: #21390]	Multicellular complex color	Grey white (9002)
[Ref.: #21390]	Medium Name (multicellularity)	ISP 7

[Ref.: #21390]	Multicellular complex forming ability	yes
[Ref.: #21390]	Multicellular complex name	Aerial Mycelium
[Ref.: #21390]	Multicellular complex color	Oyster white (1013)
[Ref.: #21390]	Medium Name (multicellularity)	Suter with tyrosine

[Ref.: #21390]	Multicellular complex forming ability	yes
[Ref.: #21390]	Multicellular complex name	Aerial Mycelium
[Ref.: #21390]	Multicellular complex color	Golden yellow (1004)
[Ref.: #21390]	Medium Name (multicellularity)	Suter without tyrosine

Information on culture and growth conditions Culture and growth conditions

[Ref.: #17974]

Culture medium

GPHF-MEDIUM (DSMZ Medium 553)

[Ref.: #17974]

Culture medium growth

[Ref.: #17974]

Culture medium link

Medium recipe at MediaDive

[Ref.: #17974]

Culture medium composition

expand / minimize

[Ref.: #21390]

Culture medium

ISP 2

[Ref.: #21390]

Culture medium growth

[Ref.: #21390]

Culture medium composition

expand / minimize

[Ref.: #21390]

Culture medium

ISP 3

[Ref.: #21390]

Culture medium growth

[Ref.: #21390]

Culture medium composition

expand / minimize

[Ref.: #21390]

Culture medium

ISP 4

[Ref.: #21390]

Culture medium growth

[Ref.: #21390]

Culture medium composition

expand / minimize

[Ref.: #21390]

Culture medium

ISP 5

[Ref.: #21390]

Culture medium growth

[Ref.: #21390]

Culture medium composition

expand / minimize

[Ref.: #21390]

Culture medium

ISP 7

[Ref.: #21390]

Culture medium growth

[Ref.: #21390]

Culture medium composition

expand / minimize

[Ref.: #21390]

Culture medium

Suter with tyrosine

[Ref.: #21390]

Culture medium growth

[Ref.: #21390]

Culture medium composition

expand / minimize

[Ref.: #21390]

Culture medium

Suter without tyrosine

[Ref.: #21390]

Culture medium growth

[Ref.: #21390]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #17974]	growth	28 °C
[Ref.: #29853]	growth	16-40 °C
[Ref.: #29853]	optimum	29.5 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #17974]	Temperature range	mesophilic
[Ref.: #29853]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #29853]			optimum	8
[Ref.: #29853]			growth	05-11

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29853]

Oxygen tolerance

aerobe

[Ref.: #29853]

Ability of spore formation

yes

	Salt		Salt conc.
[Ref.: #21390]	NaCl	maximum	5	%
[Ref.: #29853]	NaCl	growth	0-10	%
[Ref.: #29853]	NaCl	optimum	5	%

[Ref.: #67770]

Observation

quinones: MK-9(H₄)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #21390]	arabinose ChEBI	-
[Ref.: #21390]	cellulose ChEBI	-
[Ref.: #68379]	D-glucose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-mannitol ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-ribose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-xylose ChEBI	-	fermentation	* from API Coryne
[Ref.: #29853]	esculin ChEBI	+	hydrolysis
[Ref.: #21390]	fructose ChEBI	+
[Ref.: #68379]	gelatin ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #21390]	glucose ChEBI	+
[Ref.: #68379]	glycogen ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	lactose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	maltose ChEBI	-	fermentation	* from API Coryne
[Ref.: #21390]	mannose ChEBI	+
[Ref.: #21390]	myo-inositol ChEBI	+
[Ref.: #68379]	nitrate ChEBI	-	reduction	* from API Coryne
[Ref.: #21390]	raffinose ChEBI	-
[Ref.: #21390]	rhamnose ChEBI	-
[Ref.: #21390]	sucrose ChEBI	-
[Ref.: #68379]	sucrose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	urea ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #21390]	xylose ChEBI	-
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #29853]	acid phosphatase	+	3.1.3.2
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #29853]	alkaline phosphatase	+	3.1.3.1
[Ref.: #68379]	alkaline phosphatase	+	3.1.3.1	* from API Coryne, API zym
[Ref.: #68382]	alpha-chymotrypsin	+	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68379]	beta-galactosidase	-	3.2.1.23	* from API Coryne, API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68379]	beta-glucuronidase	-	3.2.1.31	* from API Coryne, API zym
[Ref.: #29853]	catalase	+	1.11.1.6
[Ref.: #68379]	gelatinase	+		* from API Coryne
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68379]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API Coryne, API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #68379]	pyrrolidonyl arylamidase	+	3.4.19.3	* from API Coryne
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #29853]	urease	+	3.5.1.5
[Ref.: #68379]	urease	+	3.5.1.5	* from API Coryne
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #21390]	516	-	+	+	+	-	-	+	+	-	+	+	not determinedn.d.	-	-	-	-	-	-	-	-	not determinedn.d.
[Ref.: #17974]	4256	-	-	+	+	-	-	-	+	+	+	+	-	-	-	-	-	-	-	-	-	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #21390]	1031	not determinedn.d.	+	+	+	-	+	+	+/-	-	+	+	+	-	-	-	+	+	+	-	-
[Ref.: #17974]	14185	-	+	+/-	-	-	+	+	+/-	-	+	+	+	-	-	-	+/-	+	+	+	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #17974]	Sample type/isolated from	roots of Samanea saman
[Ref.: #17974]	Geographic location (country and/or sea, region)	Bangkok, Kasetsart University
[Ref.: #17974]	Country	Thailand
[Ref.: #17974]	Country ISO 3 Code	THA
[Ref.: #17974]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Roots of Samanea saman (Jacq.) Merr. from Kasetsart Univ.
[Ref.: #67770]	Host species	Samanea saman
[Ref.: #67770]	Geographic location (country and/or sea, region)	Bangkok
[Ref.: #67770]	Country	Thailand
[Ref.: #67770]	Country ISO 3 Code	THA
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Tree
#Host Body-Site	#Plant	#Root (Rhizome)

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #17974]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #17974]	Amycolatopsis samaneae strain RM287 16S ribosomal RNA gene, partial sequence	GQ381310	1417	ENA	664691 tax ID

[Ref.: #17974]	GC-content	71.7 mol%
[Ref.: #67770]	GC-content	71.7 mol%	high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #17974]

Culture collection no.

DSM 45649, BCC 35842, NBRC 106095, TISTR 1919, RM 287, JCM 17934

[Ref.: #82477]

SI-ID 403813

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Amycolatopsis samaneae sp. nov., isolated from roots of Samanea saman (Jacq.) Merr.	Duangmal K, Mingma R, Pathom-Aree W, Thamchaipenet A, Inahashi Y, Matsumoto A, Takahashi Y	Int J Syst Evol Microbiol	10.1099/ijs.0.022699-0	2010	*

References

#17974

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45649

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21390

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#29853

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26227 (see below)

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68379

Automatically annotated from API Coryne .

#68382

Automatically annotated from API zym .

#82477

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID403813.1 )

#26227

IJSEM 951 2011 ( DOI 10.1099/ijs.0.022699-0 , PubMed 20511469 )

* These data were automatically processed and therefore are not curated

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