Amycolatopsis thailandensis (DSM 45650, BCC 38279, JCM 16380)

Name: Amycolatopsis thailandensis (DSM 45650, BCC 38279, JCM 16380)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 13274

Type strain

Strain Designation CMU-PLA07

Culture col. no. DSM 45650 BCC 38279 JCM 16380 CMU-PLA07 NBRC 112719

NCBI tax ID(s) 589330

Special Collections DSMZ JCM Wink compendium

History DSMZ <- C Suriyachadkun, BCC; BCC 38279 <- A. Chomchoei JCM <-- A. Siazar and S. Lumyong CMU-PLA07.

Links

Amycolatopsis thailandensis CMU-PLA07 is a bacterium that builds an aerial mycelium and was isolated from soil.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 398867

JCM 16380,DSM 45650

@ref 20215

Last LPSN update 2026-05-29 08:28:00

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Pseudonocardiales

Family Pseudonocardiaceae

Genus Amycolatopsis

Species Amycolatopsis thailandensis

Full scientific name Amycolatopsis thailandensis Chomchoei et al. 2011

Morphology

Cell morphology

@ref	Gram stain	Confidence	Motility
125439	positive	96.775
125439		93.391

Colony morphology

@ref	Colony color	Medium used
69416	Ivory (1014)	ISP 4
69416	Ivory (1014)	suter with tyrosine
69416	Ivory (1014), Rape yellow (1021)	ISP 3
69416	Lemon yellow (1012)	ISP 6
69416	Oyster white (1013), Lemon yellow (1012)	ISP 5
69416	Sand yellow (1002)	ISP 2
69416	Sulfur yellow (1016)	ISP 7

Multicellular morphology

@ref	Complex name	Complex color	Medium name
69416	Aerial mycelium		ISP 2
69416	Aerial mycelium		ISP 3
69416	Aerial mycelium		ISP 4
69416	Aerial mycelium		ISP 5
69416	Aerial mycelium		ISP 6
69416	Aerial mycelium		ISP 7
69416	Aerial mycelium	Rape yellow (1021)	suter with tyrosine

Pigmentation

@ref	Production	Name
69416		melanin pigment
69416		soluble pigment

Multimedia

@ref:	69416
multimedia content:	DSM_45650_image3.jpeg
multimedia.multimedia content:	DSM_45650_image3.jpeg
caption:	Plates (553, ISP2, ISP3, ISP4, ISP5, ISP7)
intellectual property rights:	Helmholtz-Zentrum für Infektionsforschung GmbH
manual_annotation:	1

@ref:	69416
multimedia content:	DSM_45650_image4.jpeg
multimedia.multimedia content:	DSM_45650_image4.jpeg
caption:	Plates (553, ISP2, ISP3, ISP4, ISP5, ISP7)
intellectual property rights:	Helmholtz-Zentrum für Infektionsforschung GmbH
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
17975	GPHF-MEDIUM (DSMZ Medium 553)		Medium recipe at MediaDive	Name: GPHF-MEDIUM (DSMZ Medium 553) Composition: Agar 20.0 g/l Glucose 10.0 g/l Beef extract 5.0 g/l Yeast extract 5.0 g/l Casein peptone 5.0 g/l CaCl2 x 2 H2O 0.74 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
17975	positive	growth	28
67770	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	96.542

Halophily

@ref	Salt	Growth	Tested relation	Concentration
69416	NaCl	positive	growth	0-10 %

Observation

67770

Observationquinones: MK-9(H₄)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
69416	22599 ChEBI	arabinose	-	growth
69416	62968 ChEBI	cellulose	-	growth
68379	17634 ChEBI	D-glucose	-	fermentation	from API Coryne
68379	16899 ChEBI	D-mannitol	-	fermentation	from API Coryne
68379	16988 ChEBI	D-ribose	-	fermentation	from API Coryne
68379	65327 ChEBI	D-xylose	-	fermentation	from API Coryne
68379	4853 ChEBI	esculin	-	hydrolysis	from API Coryne
69416	28757 ChEBI	fructose	+/-	growth
68379	5291 ChEBI	gelatin	+	hydrolysis	from API Coryne
69416	17234 ChEBI	glucose	+	growth
68379	28087 ChEBI	glycogen	-	fermentation	from API Coryne
68379	17716 ChEBI	lactose	-	fermentation	from API Coryne
68379	17306 ChEBI	maltose	-	fermentation	from API Coryne
69416	37684 ChEBI	mannose	+/-	growth
69416	17268 ChEBI	myo-inositol	-	growth
68379	17632 ChEBI	nitrate	-	reduction	from API Coryne
69416	16634 ChEBI	raffinose	+/-	growth
69416	26546 ChEBI	rhamnose	-	growth
68379	17992 ChEBI	sucrose	-	fermentation	from API Coryne
69416	17992 ChEBI	sucrose	+	growth
68379	16199 ChEBI	urea	-	hydrolysis	from API Coryne
69416	18222 ChEBI	xylose	-	growth

Enzymes

@ref	Value	Activity	Ec
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68379	alkaline phosphatase	+	3.1.3.1	from API Coryne
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	+	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68379	alpha-glucosidase	-	3.2.1.20	from API Coryne
68382	alpha-mannosidase	+	3.2.1.24	from API zym
68382	beta-galactosidase	-	3.2.1.23	from API zym
68379	beta-galactosidase	-	3.2.1.23	from API Coryne
68382	beta-glucosidase	-	3.2.1.21	from API zym
68379	beta-glucosidase	-	3.2.1.21	from API Coryne
68382	beta-glucuronidase	-	3.2.1.31	from API zym
68379	beta-glucuronidase	-	3.2.1.31	from API Coryne
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
68379	gelatinase	+		from API Coryne
68382	leucine arylamidase	-	3.4.11.1	from API zym
68382	lipase (C 14)	+		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68379	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API Coryne
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
68379	pyrazinamidase	-	3.5.1.B15	from API Coryne
68379	pyrrolidonyl arylamidase	+	3.4.19.3	from API Coryne
68382	trypsin	-	3.4.21.4	from API zym
68379	urease	-	3.5.1.5	from API Coryne

API coryne

@ref	Reduction of nitrateNIT	PYZ	PYRA	PAL	beta GUR	beta GAL	alpha GLU	beta NAG	ESC	URE	GEL	Control fermentationControl	GLU	RIB	XYL	MAN	MAL	LAC	SAC	GLYG	CAT
69416	-	-	+	+	-	-	-	-	-	-	+	not determinedn.d.	-	-	-	-	-	-	-	-	not determinedn.d.

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
69416	not determinedn.d.	+	+	+	+	-	+/-	-	-	-	+/-	+	+	-	-	-	-	-	+	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
17975	soil	Thailand	THA	Asia
67770	Soil in a natural park	Thailand	THA	Asia

Taxonmaps

69479

Global distribution of 16S sequence FJ581021 (>99% sequence identity) for Amycolatopsis from Microbeatlas

Aquatic Samples	3
Soil Samples	92
Animal Samples	11
Plant Samples	0
Total Samples	106

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
17975	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM223440v1 assembly for Amycolatopsis thailandensis JCM 16380	contig	GCA_002234405	589330.4	2854973814	589330	0

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
17975	Amycolatopsis thailandensis strain CMU-PLA07 16S ribosomal RNA gene, partial sequence	FJ581021	1446		589330

GC content

@ref	GC-content (mol%)	Method
17975	67
67770	67	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM223440v1 assembly for Amycolatopsis thailandensis JCM 16380
NCBI: GCA_002234405

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	96.54	no
125439	motility	BacteriaNetⓘ	no	93.39	no
125439	gram_stain	BacteriaNetⓘ	positive	96.78	no
125439	spore_formation	BacteriaNetⓘ	yes	64.76	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Amycolatopsis thailandensis strain JCM 16380
PATRIC: 589330.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	87.58	no
125438	anaerobic	anaerobicⓘ	no	95.97	no
125438	spore-forming	spore-formingⓘ	yes	73.97	no
125438	aerobic	aerobicⓘ	yes	87.81	no
125438	thermophilic	thermophileⓘ	no	98.00	yes
125438	flagellated	motile2+ⓘ	no	88.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Amycolatopsis thailandensis sp. nov., a poly(L-lactic acid)-degrading actinomycete, isolated from soil.	Chomchoei A, Pathom-Aree W, Yokota A, Kanongnuch C, Lumyong S	Int J Syst Evol Microbiol	10.1099/ijs.0.023564-0	2010

References

#17975	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45650
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68379	Automatically annotated from API Coryne .
#68382	Automatically annotated from API zym .
#69416	Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Amycolatopsis thailandensis (DSM 45650, BCC 38279, JCM 16380)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Multicellular morphology

Pigmentation

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Halophily

Observation

Metabolite utilization

Enzymes

API coryne

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_002234405

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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