Name: Amycolatopsis thailandensis CMU-PLA07
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 13274

Type strain:

Species: Amycolatopsis thailandensis

Strain Designation: CMU-PLA07

Culture col. no.: DSM 45650, BCC 38279, JCM 16380, NBRC 112719

Strain history: A. Siazar and S. Lumyong CMU-PLA07.

NCBI tax ID(s): 589330 (species)

SI-ID 398867

DSM 45650

Section

Amycolatopsis thailandensis CMU-PLA07 is a mesophilic bacterium that builds an aerial mycelium and was isolated from soil.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Pseudonocardiales*
	Family	*Pseudonocardiaceae*
	Genus	*Amycolatopsis*
	Species	**Amycolatopsis thailandensis**
	Full Scientific Name (LPSN)	Amycolatopsis thailandensis Chomchoei et al. 2011

Information on morphological and physiological properties Morphology

[Ref.: #69416]	Colony color	Ivory (1014)
[Ref.: #69416]	Cultivation medium used	ISP 4

[Ref.: #69416]	Colony color	Ivory (1014)
[Ref.: #69416]	Cultivation medium used	suter with tyrosine

[Ref.: #69416]	Colony color	Ivory (1014), Rape yellow (1021)
[Ref.: #69416]	Cultivation medium used	ISP 3

[Ref.: #69416]	Colony color	Lemon yellow (1012)
[Ref.: #69416]	Cultivation medium used	ISP 6

[Ref.: #69416]	Colony color	Oyster white (1013), Lemon yellow (1012)
[Ref.: #69416]	Cultivation medium used	ISP 5

[Ref.: #69416]	Colony color	Sand yellow (1002)
[Ref.: #69416]	Cultivation medium used	ISP 2

[Ref.: #69416]	Colony color	Sulfur yellow (1016)
[Ref.: #69416]	Cultivation medium used	ISP 7

[Ref.: #69416]	Pigment production	no
[Ref.: #69416]	Pigment name	Melanin
[Ref.: #69416]	Pigment production	no
[Ref.: #69416]	Pigment name	soluble pigment

[Ref.: #69416]	Multicellular complex forming ability	no
[Ref.: #69416]	Multicellular complex name	Aerial mycelium
[Ref.: #69416]	Medium Name (multicellularity)	ISP 2

[Ref.: #69416]	Multicellular complex forming ability	no
[Ref.: #69416]	Multicellular complex name	Aerial mycelium
[Ref.: #69416]	Medium Name (multicellularity)	ISP 3

[Ref.: #69416]	Multicellular complex forming ability	no
[Ref.: #69416]	Multicellular complex name	Aerial mycelium
[Ref.: #69416]	Medium Name (multicellularity)	ISP 4

[Ref.: #69416]	Multicellular complex forming ability	no
[Ref.: #69416]	Multicellular complex name	Aerial mycelium
[Ref.: #69416]	Medium Name (multicellularity)	ISP 5

[Ref.: #69416]	Multicellular complex forming ability	no
[Ref.: #69416]	Multicellular complex name	Aerial mycelium
[Ref.: #69416]	Medium Name (multicellularity)	ISP 6

[Ref.: #69416]	Multicellular complex forming ability	no
[Ref.: #69416]	Multicellular complex name	Aerial mycelium
[Ref.: #69416]	Medium Name (multicellularity)	ISP 7

[Ref.: #69416]	Multicellular complex forming ability	yes
[Ref.: #69416]	Multicellular complex name	Aerial mycelium
[Ref.: #69416]	Multicellular complex color	Rape yellow (1021)
[Ref.: #69416]	Medium Name (multicellularity)	suter with tyrosine

Multimedia content

[Ref.: #69416]

Caption:

Plates (553, ISP2, ISP3, ISP4, ISP5, ISP7)

[Ref.: #69416]

Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

[Ref.: #69416]

Caption:

Plates (553, ISP2, ISP3, ISP4, ISP5, ISP7)

[Ref.: #69416]

Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

Information on culture and growth conditions Culture and growth conditions

[Ref.: #17975]

Culture medium

GPHF-MEDIUM (DSMZ Medium 553)

[Ref.: #17975]

Culture medium growth

[Ref.: #17975]

Culture medium link

Medium recipe at MediaDive

[Ref.: #17975]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #17975]			growth	28 °C
[Ref.: #67770]			growth	28 °C

[Ref.: #17975]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #69416]		NaCl		growth	0-10	%

[Ref.: #67770]

Observation

quinones: MK-9(H₄)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #69416]	arabinose ChEBI	-	growth
[Ref.: #69416]	cellulose ChEBI	-	growth
[Ref.: #68379]	D-glucose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-mannitol ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-ribose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-xylose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	esculin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #69416]	fructose ChEBI	+/-	growth
[Ref.: #68379]	gelatin ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #69416]	glucose ChEBI	+	growth
[Ref.: #68379]	glycogen ChEBI	-	fermentation	* from API Coryne
[Ref.: #69416]	inositol ChEBI	-	growth
[Ref.: #68379]	lactose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	maltose ChEBI	-	fermentation	* from API Coryne
[Ref.: #69416]	mannose ChEBI	+/-	growth
[Ref.: #68379]	nitrate ChEBI	-	reduction	* from API Coryne
[Ref.: #69416]	raffinose ChEBI	+/-	growth
[Ref.: #69416]	rhamnose ChEBI	-	growth
[Ref.: #69416]	sucrose ChEBI	+	growth
[Ref.: #68379]	sucrose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	urea ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #69416]	xylose ChEBI	-	growth
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #68379]	alkaline phosphatase	+	3.1.3.1	* from API Coryne, API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	+	3.2.1.22	* from API zym
[Ref.: #68379]	alpha-glucosidase	-	3.2.1.20	* from API Coryne, API zym
[Ref.: #68382]	alpha-mannosidase	+	3.2.1.24	* from API zym
[Ref.: #68379]	beta-galactosidase	-	3.2.1.23	* from API Coryne, API zym
[Ref.: #68379]	beta-glucosidase	-	3.2.1.21	* from API Coryne, API zym
[Ref.: #68379]	beta-glucuronidase	-	3.2.1.31	* from API Coryne, API zym
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68379]	gelatinase	+		* from API Coryne
[Ref.: #68382]	leucine arylamidase	-	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	+		* from API zym
[Ref.: #68379]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API Coryne, API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #68379]	pyrazinamidase	-	3.5.1.B15	* from API Coryne
[Ref.: #68379]	pyrrolidonyl arylamidase	+	3.4.19.3	* from API Coryne
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68379]	urease	-	3.5.1.5	* from API Coryne
	Only first 10 entries are displayed. Click here to see all.

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #69416]	3909	-	-	+	+	-	-	-	-	-	-	+	not determinedn.d.	-	-	-	-	-	-	-	-	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #69416]	6093	not determinedn.d.	+	+	+	+	-	+/-	-	-	-	+/-	+	+	-	-	-	-	-	+	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #17975]	Sample type/isolated from	soil
[Ref.: #17975]	Country	Thailand
[Ref.: #17975]	Country ISO 3 Code	THA
[Ref.: #17975]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Soil in a natural park
[Ref.: #67770]	Country	Thailand
[Ref.: #67770]	Country ISO 3 Code	THA
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FJ581021 (>99% sequence identity) for Amycolatopsis from Microbeatlas

Aquatic Samples	3
Soil Samples	92
Animal Samples	11
Plant Samples
Total Samples	106

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #17975]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #17975]	Amycolatopsis thailandensis strain CMU-PLA07 16S ribosomal RNA gene, partial sequence	FJ581021	1446	ENA	589330 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Amycolatopsis thailandensis JCM 16380	GCA_002234405	contig	GenBank	589330 tax ID
[Ref.: #66792]	Amycolatopsis thailandensis strain JCM 16380	589330.4	wgs	PATRIC	589330 tax ID	*
[Ref.: #66792]	Amycolatopsis thailandensis JCM 16380	2854973814	draft	JGI IMG/M	589330 tax ID	*

[Ref.: #17975]	GC-content	67 mol%
[Ref.: #67770]	GC-content	67 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Amycolatopsis thailandensis strain JCM 16380 PATRIC: 589330.4
[Ref.: #69480]	gram-positive	yes	84.847	no
[Ref.: #69480]	anaerobic	no	99.427	no
[Ref.: #69480]	halophile	no	89.346	no
[Ref.: #69480]	spore-forming	yes	90.543	no
[Ref.: #69480]	glucose-util	yes	89.131	yes
[Ref.: #69480]	thermophile	no	98.614	yes
[Ref.: #69480]	flagellated	no	96.761	no
[Ref.: #69480]	aerobic	yes	93.953	no
[Ref.: #69480]	motile	no	92.51	no
[Ref.: #69480]	glucose-ferment	no	93.966	no

Availability in culture collections External links

[Ref.: #17975]

Culture collection no.

DSM 45650, BCC 38279, JCM 16380, NBRC 112719

[Ref.: #82478]

SI-ID 398867

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Amycolatopsis thailandensis sp. nov., a poly(L-lactic acid)-degrading actinomycete, isolated from soil.	Chomchoei A, Pathom-Aree W, Yokota A, Kanongnuch C, Lumyong S	Int J Syst Evol Microbiol	10.1099/ijs.0.023564-0	2010	*

References

#17975

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45650

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68379

Automatically annotated from API Coryne .

#68382

Automatically annotated from API zym .

#69416

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#82478

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID398867.1 )

* These data were automatically processed and therefore are not curated

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Amycolatopsis thailandensis strain JCM 16380

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