Desulforamulus aquiferis (DSM 24088, JCM 31386, Bs105)

Name: Desulforamulus aquiferis (DSM 24088, JCM 31386, Bs105)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 132676

Type strain

Strain Designation Bs105

Culture col. no. DSM 24088 JCM 31386 Bs105

NCBI tax ID(s) 1397668

Special Collections DSMZ JCM Literature strains

History DSMZ <- A. Ranchou-Peyrouse, Univ. Pau et Pays de l’Adour, IPREM EEM, IBEAS, France; Bs105 <- Lab. Microbiol. de l'IRD/ESIL, Univ. de Provence et de la Méditerranée, Marseille, France <- J.-F. Lascourrèges and S. Berlendis {2008} JCM <-- A. Ranchou-Peyruse; Univ. of Pau & Pays de l'Adour, France; Bs105.

Links

Desulforamulus aquiferis Bs105 is an anaerobe, chemolithoautotroph, spore-forming bacterium that was isolated from deep aquifer water from an oligotrophic gas storage aquifer contaminated with BTEX at a depth of 760 m.

spore-forming Gram-positive rod-shaped anaerobe chemolithoautotroph genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 406254

JCM 31386,DSM 24088

@ref 20215

Last LPSN update 2026-05-29 08:37:55

Domain Bacteria

Phylum Bacillota

Class Clostridia

Order Eubacteriales

Family Peptococcaceae

Genus Desulforamulus

Species Desulforamulus aquiferis

Full scientific name Desulforamulus aquiferis (Berlendis et al. 2016) Watanabe et al. 2021

Synonyms (1)

Desulfotomaculum aquiferis

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
25005	positive	2 µm	0.7 µm	rod-shaped

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
24465	DESULFOVIBRIO (MV) MEDIUM (DSMZ Medium 641)		Medium recipe at MediaDive	Name: DESULFOVIBRIO (MV) MEDIUM (DSMZ Medium 641; with strain-specific modifications) Composition: Na-pyruvate 2.49252 g/l Na2SO4 1.99402 g/l Na2S2O3 x 5 H2O 0.997009 g/l MgSO4 x 7 H2O 0.997009 g/l NH4Cl 0.997009 g/l Yeast extract 0.997009 g/l Na2CO3 0.997009 g/l KH2PO4 0.498504 g/l Na2S x 9 H2O 0.0997009 g/l CaCl2 x 2 H2O 0.0997009 g/l HCl 0.00249252 g/l FeCl2 x 4 H2O 0.00149551 g/l NaOH 0.000498504 g/l Sodium resazurin 0.000498504 g/l CoCl2 x 6 H2O 0.000189432 g/l Pyridoxine hydrochloride 9.97009e-05 g/l MnCl2 x 4 H2O 9.97009e-05 g/l ZnCl2 6.97906e-05 g/l p-Aminobenzoic acid 4.98504e-05 g/l (DL)-alpha-Lipoic acid 4.98504e-05 g/l Riboflavin 4.98504e-05 g/l Thiamine HCl 4.98504e-05 g/l Nicotinic acid 4.98504e-05 g/l Calcium D-(+)-pantothenate 4.98504e-05 g/l Na2MoO4 x 2 H2O 3.58923e-05 g/l NiCl2 x 6 H2O 2.39282e-05 g/l Folic acid 1.99402e-05 g/l Biotin 1.99402e-05 g/l H3BO3 5.98205e-06 g/l Na2WO4 x 2 H2O 3.98804e-06 g/l Na2SeO3 x 5 H2O 2.99103e-06 g/l CuCl2 x 2 H2O 1.99402e-06 g/l Vitamin B12 9.97009e-07 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
24465	positive	growth	42
25005	positive	growth	30-45
25005	positive	optimum	42
67770	positive	growth	37

Culture pH

@ref	Ability	Type	PH
25005	positive	optimum	7.4
25005	positive	growth	6.2-8.0

Physiology and metabolism

Oxygen tolerance

25005

Oxygen toleranceanaerobe

Nutrition type

25005

Typechemolithoautotroph

Spore formation

@ref	Spore description	Type of spore	Spore formation
25005	terminal-spore	spore

Halophily

@ref	Salt	Growth	Tested relation	Concentration
25005	NaCl	positive	growth	0-2.5 %
25005	NaCl		optimum	2 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
25005	30089 ChEBI	acetate	+	carbon source
25005	16236 ChEBI	ethanol	+	carbon source
25005	28757 ChEBI	fructose	+	fermentation
25005	29806 ChEBI	fumarate	+	carbon source
25005	29806 ChEBI	fumarate	+	fermentation
25005	24996 ChEBI	lactate	+	carbon source
25005	28831 ChEBI	propanol	+	carbon source
25005	15361 ChEBI	pyruvate	+	carbon source
25005	15361 ChEBI	pyruvate	+	fermentation
25005	16189 ChEBI	sulfate	+	electron acceptor
25005	17359 ChEBI	sulfite	+	electron acceptor
25005	16094 ChEBI	thiosulfate	+	electron acceptor

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Contamination	-
#Environmental	#Aquatic	#Groundwater

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
24465	deep aquifer water from an oligotrophic gas storage aquifer contaminated with BTEX (benzene, toluene, ethylbenzene and xylenes) at a depth of 760 m	Paris Basin	France	FRA	Europe
67770	Deep aquifer formation (-760 m) near Paris		France	FRA	Europe

Taxonmaps

69479

Global distribution of 16S sequence KF591693 (>99% sequence identity) for Desulfotomaculum aquiferis subclade from Microbeatlas

Aquatic Samples	48
Soil Samples	204
Animal Samples	23
Plant Samples	2
Total Samples	277

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
24465	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
67770	ASM414360v1 assembly for Desulforamulus aquiferis Bs105	contig	GCA_004143605	1397668.3	1397668	0

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
24465	Desulforamulus aquiferis strain Bs105 16S ribosomal RNA gene, partial sequence	KF591693	1384		1397668

GC content

@ref	GC-content (mol%)	Method
24465	42.9	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Desulforamulus aquiferis Bs105
NCBI: GCA_004143605.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	53.13	no
125438	anaerobic	anaerobicⓘ	yes	86.33	yes
125438	aerobic	aerobicⓘ	no	90.28	no
125438	spore-forming	spore-formingⓘ	yes	79.91	no
125438	thermophilic	thermophileⓘ	no	74.80	yes
125438	flagellated	motile2+ⓘ	yes	77.72	no

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#24465	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 24088
#25005	S. R.-P. Berlendis, M.,Fardeau, M. L.,Lascourrèges, J. F.,Joseph, M.,Ollivier, B.,Aüllo, T.,Dequidt, D.,Magot, M.,Ranchou-Peyruse, A.: Desulfotomaculum aquiferis sp. nov. and Desulfotomaculum profundi sp. nov., isolated from a deep natural gas storage aquifer. IJSEM 66: 4329 - 4338 2016 ( DOI 10.1099/ijsem.0.001352 , PubMed 27473224 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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