Name: Desulforamulus aquiferis Bs105
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 132676

Type strain:

Species: Desulforamulus aquiferis

Strain Designation: Bs105

Culture col. no.: DSM 24088, JCM 31386

Strain history: A. Ranchou-Peyruse; Univ. of Pau & Pays de l'Adour, France; Bs105.

NCBI tax ID(s): 1397668 (species)

SI-ID 406254

DSM 24088

Special Collections

Section

Desulforamulus aquiferis Bs105 is an anaerobe, chemolithoautotroph, spore-forming bacterium that was isolated from deep aquifer water from an oligotrophic gas storage aquifer contaminated with BTEX at a depth of 760 m.

Gram-positive
rod-shaped
spore-forming
anaerobe
chemolithoautotroph
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Peptococcaceae*
	Genus	*Desulforamulus*
	Species	**Desulforamulus aquiferis**
	Full Scientific Name (LPSN)	Desulforamulus aquiferis (Berlendis et al. 2016) Watanabe et al. 2021

Synonym

Desulfotomaculum aquiferis

Information on morphological and physiological properties Morphology

[Ref.: #25005]	Gram stain	positive

[Ref.: #25005]	Cell length	2 µm

[Ref.: #25005]	Cell width	0.7 µm

[Ref.: #25005]	Cell shape	rod-shaped

[Ref.: #25005]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #24465]

Culture medium

DESULFOVIBRIO (MV) MEDIUM (DSMZ Medium 641)

[Ref.: #24465]

Culture medium growth

[Ref.: #24465]

Culture medium link

Medium recipe at MediaDive

[Ref.: #24465]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #24465]	growth	42 °C
[Ref.: #25005]	growth	30-45 °C
[Ref.: #25005]	optimum	42 °C
[Ref.: #67770]	growth	37 °C

	pH	Kind of pH		pH
[Ref.: #25005]			optimum	7.4
[Ref.: #25005]			growth	6.2-8.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #25005]

Oxygen tolerance

anaerobe

[Ref.: #25005]

Nutrition type

chemolithoautotroph

[Ref.: #25005]	Spore description	terminal-spore
[Ref.: #25005]	Type of spore	spore
[Ref.: #25005]	Ability of spore formation	yes

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #25005]		NaCl		growth	0-2.5	%
[Ref.: #25005]		NaCl		optimum	2	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #25005]	acetate ChEBI	+	carbon source
[Ref.: #25005]	ethanol ChEBI	+	carbon source
[Ref.: #25005]	fructose ChEBI	+	fermentation
[Ref.: #25005]	fumarate ChEBI	+	carbon source
[Ref.: #25005]	fumarate ChEBI	+	fermentation
[Ref.: #25005]	lactate ChEBI	+	carbon source
[Ref.: #25005]	propanol ChEBI	+	carbon source
[Ref.: #25005]	pyruvate ChEBI	+	carbon source
[Ref.: #25005]	pyruvate ChEBI	+	fermentation
[Ref.: #25005]	sulfate ChEBI	+	electron acceptor
[Ref.: #25005]	sulfite ChEBI	+	electron acceptor
[Ref.: #25005]	thiosulfate ChEBI	+	electron acceptor
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24465]	Sample type/isolated from	deep aquifer water from an oligotrophic gas storage aquifer contaminated with BTEX (benzene, toluene, ethylbenzene and xylenes) at a depth of 760 m
[Ref.: #24465]	Geographic location (country and/or sea, region)	Paris Basin
[Ref.: #24465]	Country	France
[Ref.: #24465]	Country ISO 3 Code	FRA
[Ref.: #24465]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Deep aquifer formation (-760 m) near Paris
[Ref.: #67770]	Country	France
[Ref.: #67770]	Country ISO 3 Code	FRA
[Ref.: #67770]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Engineered	#Contamination	-
#Environmental	#Aquatic	#Groundwater

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KF591693 (>99% sequence identity) for Desulfotomaculum aquiferis subclade from Microbeatlas

Aquatic Samples	48
Soil Samples	204
Animal Samples	23
Plant Samples	2
Total Samples	277

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #24465]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #24465]	Desulforamulus aquiferis strain Bs105 16S ribosomal RNA gene, partial sequence	KF591693	1384	GenBank ENA	1397668 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Desulforamulus aquiferis Bs105	GCA_004143605	contig	GenBank ENA	1397668 tax ID

[Ref.: #24465]

GC-content

42.9 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Desulforamulus aquiferis Bs105 NCBI: GCA_004143605.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	53.132	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	yes	86.326	yes
[Ref.: #69480]	aerobic	aerobicⓘ	no	90.28	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	79.912	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	74.795	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	77.72	no

Availability in culture collections External links

[Ref.: #24465]

Culture collection no.

DSM 24088, JCM 31386

[Ref.: #90984]

SI-ID 406254

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24465

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 24088

#25005

S. R.-P. Berlendis, M.,Fardeau, M. L.,Lascourrèges, J. F.,Joseph, M.,Ollivier, B.,Aüllo, T.,Dequidt, D.,Magot, M.,Ranchou-Peyruse, A.: Desulfotomaculum aquiferis sp. nov. and Desulfotomaculum profundi sp. nov., isolated from a deep natural gas storage aquifer. IJSEM 66: 4329 - 4338 2016 ( DOI 10.1099/ijsem.0.001352 , PubMed 27473224 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#90984

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID406254.1 )

* These data were automatically processed and therefore are not curated

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